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Cmc06g0167321 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0167321
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr06:20487612..20488004
RNA-Seq ExpressionCmc06g0167321
SyntenyCmc06g0167321
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039213.1 pol protein [Cucumis melo var. makuwa]4.3e-5491.67Show/hide
Query:  EQNKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDIL
        E NKV VKN YP LRID LFDQLQGATVFS IDL SGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL
Subjt:  EQNKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDIL

Query:  VYSKIEAEHKEHLHQVLETL
        +YSK EAEHKEHLHQVLETL
Subjt:  VYSKIEAEHKEHLHQVLETL

KAA0055932.1 pol protein [Cucumis melo var. makuwa]7.4e-5490Show/hide
Query:  EQNKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDIL
        E NKV VKNHYP  RID LFDQLQGATVFSKIDL SGYHQLRIRD DIPKTAFRSRYGHYEF+VMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL
Subjt:  EQNKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDIL

Query:  VYSKIEAEHKEHLHQVLETL
        +YSK EAEH+EHLHQVLETL
Subjt:  VYSKIEAEHKEHLHQVLETL

TYJ96191.1 putative polyprotein [Cucumis melo var. makuwa]2.1e-5384.8Show/hide
Query:  FTLITEQNKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVF
        F +  E NKV +KNHYP  RID LFDQLQGAT+FSKIDLCSGYHQLRIR+SDIPKTAFR RYGHYEFIVMSFGLTNA  VFMD+MNR+FKDFLDTFVIVF
Subjt:  FTLITEQNKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVF

Query:  IDDILVYSKIEAEHKEHLHQVLETL
        IDDILVYSKIEAEH+EHLH+VLETL
Subjt:  IDDILVYSKIEAEHKEHLHQVLETL

TYK18480.1 pol protein [Cucumis melo var. makuwa]2.5e-5491.67Show/hide
Query:  EQNKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDIL
        E NKV VKN YP LRID LFDQLQGATVFSKIDL SGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL
Subjt:  EQNKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDIL

Query:  VYSKIEAEHKEHLHQVLETL
        +YSK EAEH+EHLHQVLETL
Subjt:  VYSKIEAEHKEHLHQVLETL

TYK22181.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]7.4e-5489.17Show/hide
Query:  EQNKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDIL
        E NKV VKNHYP  RID LFDQLQGAT+FSKIDL SGYHQLRIRDSDIP+TAFRSRYGHYEFIVMSFGLTNAP +FMDLMNRVFKDFLDTFVIVFIDDIL
Subjt:  EQNKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDIL

Query:  VYSKIEAEHKEHLHQVLETL
        +YSK EAEH+EHLHQVLETL
Subjt:  VYSKIEAEHKEHLHQVLETL

TrEMBL top hitse value%identityAlignment
A0A5A7T8B1 Pol protein2.1e-5491.67Show/hide
Query:  EQNKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDIL
        E NKV VKN YP LRID LFDQLQGATVFS IDL SGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL
Subjt:  EQNKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDIL

Query:  VYSKIEAEHKEHLHQVLETL
        +YSK EAEHKEHLHQVLETL
Subjt:  VYSKIEAEHKEHLHQVLETL

A0A5A7UJ81 Reverse transcriptase3.6e-5490Show/hide
Query:  EQNKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDIL
        E NKV VKNHYP  RID LFDQLQGATVFSKIDL SGYHQLRIRD DIPKTAFRSRYGHYEF+VMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL
Subjt:  EQNKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDIL

Query:  VYSKIEAEHKEHLHQVLETL
        +YSK EAEH+EHLHQVLETL
Subjt:  VYSKIEAEHKEHLHQVLETL

A0A5A7VBY3 Reverse transcriptase1.0e-5390Show/hide
Query:  EQNKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDIL
        E NKV VKN YP  RID LFDQLQGATVFSKIDL SGYHQLRIRDSDIPKTAFRSRYGHYEF+VMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL
Subjt:  EQNKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDIL

Query:  VYSKIEAEHKEHLHQVLETL
        +YSK EAEH+EHLHQVLETL
Subjt:  VYSKIEAEHKEHLHQVLETL

A0A5D3D4M7 Pol protein1.2e-5491.67Show/hide
Query:  EQNKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDIL
        E NKV VKN YP LRID LFDQLQGATVFSKIDL SGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLD+FVIVFIDDIL
Subjt:  EQNKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDIL

Query:  VYSKIEAEHKEHLHQVLETL
        +YSK EAEH+EHLHQVLETL
Subjt:  VYSKIEAEHKEHLHQVLETL

A0A5D3DES2 Reverse transcriptase3.6e-5489.17Show/hide
Query:  EQNKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDIL
        E NKV VKNHYP  RID LFDQLQGAT+FSKIDL SGYHQLRIRDSDIP+TAFRSRYGHYEFIVMSFGLTNAP +FMDLMNRVFKDFLDTFVIVFIDDIL
Subjt:  EQNKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDIL

Query:  VYSKIEAEHKEHLHQVLETL
        +YSK EAEH+EHLHQVLETL
Subjt:  VYSKIEAEHKEHLHQVLETL

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein2.9e-2140.68Show/hide
Query:  NKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVY
        NK    N YP   I+ L  ++QG+T+F+K+DL S YH +R+R  D  K AFR   G +E++VM +G++ APA F   +N +  +  ++ V+ ++DDIL++
Subjt:  NKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVY

Query:  SKIEAEHKEHLHQVLETL
        SK E+EH +H+  VL+ L
Subjt:  SKIEAEHKEHLHQVLETL

P0CT35 Transposon Tf2-2 polyprotein2.9e-2140.68Show/hide
Query:  NKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVY
        NK    N YP   I+ L  ++QG+T+F+K+DL S YH +R+R  D  K AFR   G +E++VM +G++ APA F   +N +  +  ++ V+ ++DDIL++
Subjt:  NKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVY

Query:  SKIEAEHKEHLHQVLETL
        SK E+EH +H+  VL+ L
Subjt:  SKIEAEHKEHLHQVLETL

P0CT36 Transposon Tf2-3 polyprotein2.9e-2140.68Show/hide
Query:  NKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVY
        NK    N YP   I+ L  ++QG+T+F+K+DL S YH +R+R  D  K AFR   G +E++VM +G++ APA F   +N +  +  ++ V+ ++DDIL++
Subjt:  NKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVY

Query:  SKIEAEHKEHLHQVLETL
        SK E+EH +H+  VL+ L
Subjt:  SKIEAEHKEHLHQVLETL

P0CT41 Transposon Tf2-12 polyprotein2.9e-2140.68Show/hide
Query:  NKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVY
        NK    N YP   I+ L  ++QG+T+F+K+DL S YH +R+R  D  K AFR   G +E++VM +G++ APA F   +N +  +  ++ V+ ++DDIL++
Subjt:  NKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVY

Query:  SKIEAEHKEHLHQVLETL
        SK E+EH +H+  VL+ L
Subjt:  SKIEAEHKEHLHQVLETL

P31843 RNA-directed DNA polymerase homolog4.0e-2652.94Show/hide
Query:  KVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILV--
        KV +KN YP  R+D LFD+L  AT F+K+DL SGY Q+RI   D PKT   +RYG +EF VM FGLTNA A F +LMN V  ++LD FV+V++DD++V  
Subjt:  KVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILV--

Query:  -YSKIEAEHKEHLHQVLET
         YS    EH +HL  V E+
Subjt:  -YSKIEAEHKEHLHQVLET

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCGATGCATCTTTACATTGATTACAGAGCAGAATAAGGTGGCAGTCAAGAACCACTATCCATTTCTAAGGATTGACTACTTGTTTGATCAGCTGCAAGGAGCTAC
TGTTTTCTCTAAAATCGATTTATGTTCAGGCTATCACCAGCTGAGGATTAGAGACAGTGACATCCCTAAGACTGCTTTCCGTTCCAGATATGGACATTACGAGTTCATTG
TAATGTCTTTTGGTTTGACAAATGCTCCTGCTGTATTTATGGATCTGATGAACAGGGTGTTTAAGGATTTCTTAGACACTTTTGTTATAGTTTTTATCGATGATATCTTG
GTTTACTCCAAAATAGAGGCTGAGCATAAAGAGCATTTGCATCAGGTTTTGGAGACTCTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAATCGATGCATCTTTACATTGATTACAGAGCAGAATAAGGTGGCAGTCAAGAACCACTATCCATTTCTAAGGATTGACTACTTGTTTGATCAGCTGCAAGGAGCTAC
TGTTTTCTCTAAAATCGATTTATGTTCAGGCTATCACCAGCTGAGGATTAGAGACAGTGACATCCCTAAGACTGCTTTCCGTTCCAGATATGGACATTACGAGTTCATTG
TAATGTCTTTTGGTTTGACAAATGCTCCTGCTGTATTTATGGATCTGATGAACAGGGTGTTTAAGGATTTCTTAGACACTTTTGTTATAGTTTTTATCGATGATATCTTG
GTTTACTCCAAAATAGAGGCTGAGCATAAAGAGCATTTGCATCAGGTTTTGGAGACTCTTTGA
Protein sequenceShow/hide protein sequence
MNRCIFTLITEQNKVAVKNHYPFLRIDYLFDQLQGATVFSKIDLCSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDIL
VYSKIEAEHKEHLHQVLETL