CuGenDBv2

Gene ID	Cmc06g0167391
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic
Genome location	CMiso1.1chr06:20555381..20555623
RNA-Seq Expression	Cmc06g0167391
Synteny	Cmc06g0167391
Gene Ontology terms	GO:0022900 - electron transport chain (biological process) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0008137 - NADH dehydrogenase (ubiquinone) activity (molecular function) GO:0048038 - quinone binding (molecular function)
InterPro domains	IPR001457 - NADH:ubiquinone/plastoquinone oxidoreductase, chain 6 IPR042106 - NADH-ubiquinone/plastoquinone oxidoreductase chain 6, subunit NuoJ

Homology

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GenBank top hits

e value

%identity

Alignment

YP_004841838.1 NADH-plastoquinone oxidoreductase subunit 6 [Cucumis melo subsp. melo]

1.3e-21

86.08

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Query:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI
        MDL GPIHDFLVVLLGS LI GSMGVLLFNNSIY AFSLGLVLVSISLFYILAN QFVA  QLLIYVGAINV IIF ++
Subjt:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI

YP_009317439.1 NADH dehydrogenase subunit 6 [Coccinia grandis]

1.3e-21

86.08

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Query:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI
        MDL GPIHDFLVVLLGS LI GSMGVLLFNNSIY AFSLGLVLVSISLFYILAN QFVA  QLLIYVGAINV IIF ++
Subjt:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI

YP_009447504.1 NADH dehydrogenase subunit 6 [Cucurbita maxima]

1.3e-21

86.08

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Query:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI
        MDL GPIHDFLVVLLGS LI GSMGVLLFNNSIY AFSLGLVLVSISLFYILAN QFVA  QLLIYVGAINV IIF ++
Subjt:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI

YP_009525238.1 NADH-plastoquinone oxidoreductase subunit 6 [Hodgsonia macrocarpa]

1.3e-21

86.08

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Query:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI
        MDL GPIHDFLVVLLGS LI GSMGVLLFNNSIY AFSLGLVLVSISLFYILAN QFVA  QLLIYVGAINV IIF ++
Subjt:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI

YP_009560888.1 NdhG [Trichosanthes kirilowii]

1.3e-21

86.08

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Query:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI
        MDL GPIHDFLVVLLGS LI GSMGVLLFNNSIY AFSLGLVLVSISLFYILAN QFVA  QLLIYVGAINV IIF ++
Subjt:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI

TrEMBL top hits

e value

%identity

Alignment

A0A1S4EU65 NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic

6.4e-22

86.08

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Query:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI
        MDL GPIHDFLVVLLGS LI GSMGVLLFNNSIY AFSLGLVLVSISLFYILAN QFVA  QLLIYVGAINV IIF ++
Subjt:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI

A0A1X9Q1H7 NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic

6.4e-22

86.08

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Query:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI
        MDL GPIHDFLVVLLGS LI GSMGVLLFNNSIY AFSLGLVLVSISLFYILAN QFVA  QLLIYVGAINV IIF ++
Subjt:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI

A0A218KG81 NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic

6.4e-22

86.08

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Query:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI
        MDL GPIHDFLVVLLGS LI GSMGVLLFNNSIY AFSLGLVLVSISLFYILAN QFVA  QLLIYVGAINV IIF ++
Subjt:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI

A0A249RZE0 NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic

6.4e-22

86.08

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Query:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI
        MDL GPIHDFLVVLLGS LI GSMGVLLFNNSIY AFSLGLVLVSISLFYILAN QFVA  QLLIYVGAINV IIF ++
Subjt:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI

A0A6H0ET31 NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic

6.4e-22

86.08

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Query:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI
        MDL GPIHDFLVVLLGS LI GSMGVLLFNNSIY AFSLGLVLVSISLFYILAN QFVA  QLLIYVGAINV IIF ++
Subjt:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI

SwissProt top hits

e value

%identity

Alignment

A7Y3L7 NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic

2.2e-19

73.42

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Query:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI
        MDL GPIHDFL+V LGS LI GS+GV+LF N IY AFSLGLVLV ISLFYIL+N  FVA  QLLIYVGAINV I+F ++
Subjt:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI

B2XWJ4 NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic

2.9e-19

72.15

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Query:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI
        MDL GPIHDFL+V  GS LI G +GV+LF N I+ AFSLGLVLV ISLFYI+AN QFVA  QLLIYVGAINV IIF ++
Subjt:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI

Q09MC3 NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic

2.9e-19

70.89

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Query:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI
        MDL GPIHDF++V LGS LI G +GV+LF N IY AFSLGLVLV ISLFYIL+N  FVA  QLLIYVGA+NV IIF ++
Subjt:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI

Q2QD38 NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic

1.7e-24

86.08

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Query:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI
        MDL GPIHDFLVVLLGS LI GSMGVLLFNNSIY AFSLGLVLVSISLFYILAN QFVA  QLLIYVGAINV IIF ++
Subjt:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI

Q9M3I8 NAD(P)H-quinone oxidoreductase subunit 6, chloroplastic

9.9e-20

76.32

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Query:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIF
        MDL GPIHDFL+V LGS LI G++GV+LF N I+ AFSLGLVLV ISLFYILAN  FVA  QLLIYVGAINV IIF
Subjt:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIF

Arabidopsis top hits

e value

%identity

Alignment

ATCG01080.1 NADH:ubiquinone/plastoquinone oxidoreductase, chain 6

5.6e-18

67.09

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Query:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI
        MDL GPIHDFL+V LGS L+ G +GV+L  N I+ AFSLG VLV ISL YIL+N  FVA  QLLIYVGAINV IIF ++
Subjt:  MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMI

Sequences

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CDS sequence

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ATGGATTTGCATGGACCGATACATGATTTTCTTGTAGTCTTGTTGGGATCAGATCTTATATCAGGAAGTATGGGAGTACTATTATTTAACAACTCCATTTATTTT
GCTTTTTCGTTAGGACTAGTTCTTGTTTCTATATCCTTATTCTATATTCTGGCAAACATCCAGTTTGTAGCTGTTATGCAACTCCTTATTTACGTGGGAGCTATA
AATGTTTCAATCATATTTGTTATGATATCATGA

mRNA sequence

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Protein sequence

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MDLHGPIHDFLVVLLGSDLISGSMGVLLFNNSIYFAFSLGLVLVSISLFYILANIQFVAVMQLLIYVGAINVSIIFVMIS

Cmc06g0167391 (gene) of Melon (Charmono) v1.1 genome