; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0167491 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0167491
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr06:20656637..20657209
RNA-Seq ExpressionCmc06g0167491
SyntenyCmc06g0167491
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR041588 - Integrase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032302.1 pol protein [Cucumis melo var. makuwa]5.5e-9093.53Show/hide
Query:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY
        MHPGSTKMYQDLRSVYWWR MKREVADFVSRCLVCQQVKAPRQ P GLLQPLSVPGWKWESVSMDFITGLP+TLKGYT+IWVVVDRLTKS HFV GKSTY
Subjt:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY

Query:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLED
        TASKWGQLYMT+IVRLHGVPVSIISDRDARF SKFWKGLQL+LGTRLDFSTAFHPQTDGQTERLNQ+LED
Subjt:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLED

KAA0035204.1 reverse transcriptase [Cucumis melo var. makuwa]3.2e-9092.94Show/hide
Query:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY
        MHPGSTKMYQDLRSVYWWRNMKREVADF+SRCLVCQQVKAPRQRP GLLQPLSVPGWKWESVSMDFITGLP+TLKGYT+IWVVVDRLTKS HFV GKSTY
Subjt:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY

Query:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLED
        TASKWGQLYMT+IVRLHGVPVSIISDRD RF SKFWKGLQL+LGTRLDFST FHPQTDGQTERLNQ+LED
Subjt:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLED

KAA0041490.1 hypothetical protein E6C27_scaffold6G00780 [Cucumis melo var. makuwa]5.5e-9092.94Show/hide
Query:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY
        MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRP GLLQPLSVPGWKWESVSMDFITGLP+TLKGYT+IWVVVDRLTKS HFV GKSTY
Subjt:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY

Query:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLED
        TASKWGQLYMT+IVRLHGVPVSIISDRD RF SKFWKGLQL+LGTRLDFSTAFHPQTDG+T+RLNQ+LED
Subjt:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLED

KAA0048442.1 pol protein [Cucumis melo var. makuwa]4.2e-9093.53Show/hide
Query:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY
        MHPGSTKMYQDLRSVYWWR MKR+VADFVSRCLVCQQVKAPRQ P GLLQPLSVPGWKWESVSMDFITGLP+TLKGYT+IWVVVDRLTKS HFV GKSTY
Subjt:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY

Query:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLED
        TASKWGQLYMTKIVRLHGVPVSIISDRDARF SKFWKGLQL+LGTRLDFSTAFHPQTDGQTERLNQ+LED
Subjt:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLED

KAA0056636.1 pol protein [Cucumis melo var. makuwa]5.5e-9093.53Show/hide
Query:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY
        MHPGSTKMYQDLRSVYWWR MKREVADFVSRCLVCQQVKAPRQ PVGLLQPLSVPGWKWESVSMDFITGLP+TLKGYT+IWVVVDRLTKS HFV GKSTY
Subjt:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY

Query:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLED
        TASKWGQLYMT+IVRLHGVPVSI+SDRDARF SKFWKGLQL+LGTRLDFSTAFHPQTDGQTERLNQ+LED
Subjt:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLED

TrEMBL top hitse value%identityAlignment
A0A5A7SVA8 Reverse transcriptase1.5e-9092.94Show/hide
Query:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY
        MHPGSTKMYQDLRSVYWWRNMKREVADF+SRCLVCQQVKAPRQRP GLLQPLSVPGWKWESVSMDFITGLP+TLKGYT+IWVVVDRLTKS HFV GKSTY
Subjt:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY

Query:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLED
        TASKWGQLYMT+IVRLHGVPVSIISDRD RF SKFWKGLQL+LGTRLDFST FHPQTDGQTERLNQ+LED
Subjt:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLED

A0A5A7TDX1 Reverse transcriptase2.6e-9092.94Show/hide
Query:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY
        MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRP GLLQPLSVPGWKWESVSMDFITGLP+TLKGYT+IWVVVDRLTKS HFV GKSTY
Subjt:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY

Query:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLED
        TASKWGQLYMT+IVRLHGVPVSIISDRD RF SKFWKGLQL+LGTRLDFSTAFHPQTDG+T+RLNQ+LED
Subjt:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLED

A0A5A7TY28 Reverse transcriptase2.0e-9093.53Show/hide
Query:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY
        MHPGSTKMYQDLRSVYWWR MKR+VADFVSRCLVCQQVKAPRQ P GLLQPLSVPGWKWESVSMDFITGLP+TLKGYT+IWVVVDRLTKS HFV GKSTY
Subjt:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY

Query:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLED
        TASKWGQLYMTKIVRLHGVPVSIISDRDARF SKFWKGLQL+LGTRLDFSTAFHPQTDGQTERLNQ+LED
Subjt:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLED

A0A5A7UQP9 Pol protein2.6e-9093.53Show/hide
Query:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY
        MHPGSTKMYQDLRSVYWWR MKREVADFVSRCLVCQQVKAPRQ PVGLLQPLSVPGWKWESVSMDFITGLP+TLKGYT+IWVVVDRLTKS HFV GKSTY
Subjt:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY

Query:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLED
        TASKWGQLYMT+IVRLHGVPVSI+SDRDARF SKFWKGLQL+LGTRLDFSTAFHPQTDGQTERLNQ+LED
Subjt:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLED

A0A5D3D4M7 Pol protein2.6e-9092.94Show/hide
Query:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY
        MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRP GLLQPLSVPGWKWESVSMDFITGLP+TLKGYT+IWVVVD+LTKS HFV GKSTY
Subjt:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY

Query:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLED
        TASKWGQLYMT+IVRLHGVPVSIISDRD RF SKFWKGLQL+LGTRLDFSTAFHPQTDGQTERLNQ+ ED
Subjt:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLED

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein3.1e-2735.5Show/hide
Query:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY
        +HPG   +   +   + W+ +++++ ++V  C  CQ  K+   +P G LQP+      WES+SMDFIT LP +  GY  ++VVVDR +K    V    + 
Subjt:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY

Query:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLE
        TA +  +++  +++   G P  II+D D  F S+ WK         + FS  + PQTDGQTER NQ +E
Subjt:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLE

P0CT41 Transposon Tf2-12 polyprotein3.1e-2735.5Show/hide
Query:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY
        +HPG   +   +   + W+ +++++ ++V  C  CQ  K+   +P G LQP+      WES+SMDFIT LP +  GY  ++VVVDR +K    V    + 
Subjt:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY

Query:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLE
        TA +  +++  +++   G P  II+D D  F S+ WK         + FS  + PQTDGQTER NQ +E
Subjt:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLE

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein5.0e-3038.92Show/hide
Query:  HPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTYT
        H G T     +  +Y+W  ++  +  ++  C+ CQ +K+ R R  GLLQPL +   +W  +SMDF+TGLP T     +I VVVDR +K  HF+  + T  
Subjt:  HPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTYT

Query:  ASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVL
        A++   L    I   HG P +I SDRD R  +  ++ L   LG +   S+A HPQTDGQ+ER  Q L
Subjt:  ASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVL

Q99315 Transposon Ty3-G Gag-Pol polyprotein5.0e-3038.92Show/hide
Query:  HPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTYT
        H G T     +  +Y+W  ++  +  ++  C+ CQ +K+ R R  GLLQPL +   +W  +SMDF+TGLP T     +I VVVDR +K  HF+  + T  
Subjt:  HPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTYT

Query:  ASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVL
        A++   L    I   HG P +I SDRD R  +  ++ L   LG +   S+A HPQTDGQ+ER  Q L
Subjt:  ASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVL

Q9UR07 Transposon Tf2-11 polyprotein3.1e-2735.5Show/hide
Query:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY
        +HPG   +   +   + W+ +++++ ++V  C  CQ  K+   +P G LQP+      WES+SMDFIT LP +  GY  ++VVVDR +K    V    + 
Subjt:  MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTY

Query:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLE
        TA +  +++  +++   G P  II+D D  F S+ WK         + FS  + PQTDGQTER NQ +E
Subjt:  TASKWGQLYMTKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLE

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCACCCTGGAAGTACGAAGATGTACCAGGACTTAAGGAGTGTCTATTGGTGGAGGAACATGAAGAGAGAAGTGGCAGATTTTGTCAGTAGGTGTTTAGTGTGCCAGCA
AGTGAAGGCACCTAGACAGCGACCAGTCGGGTTGTTGCAACCTTTGAGCGTGCCAGGATGGAAATGGGAGAGTGTGTCGATGGACTTCATTACAGGACTACCCAGGACCC
TAAAGGGCTATACACTGATCTGGGTTGTTGTTGACAGACTCACGAAGTCGACCCACTTTGTGCGAGGGAAATCCACTTACACTGCCAGTAAGTGGGGGCAGTTATACATG
ACAAAGATTGTGAGACTACACGGAGTACCCGTATCCATCATTTCAGACAGAGATGCTCGTTTCATATCGAAGTTCTGGAAAGGACTTCAACTTTCTTTAGGCACGAGGTT
AGACTTCAGCACAGCCTTCCACCCTCAGACTGATGGTCAGACAGAGAGATTGAACCAGGTTTTGGAAGACAGGCGTGCTAGAGTTTTCAGGGAGTTGGGACTCCTATTTG
CATCTAATGGAGTTCGCCTATAA
mRNA sequenceShow/hide mRNA sequence
ATGCACCCTGGAAGTACGAAGATGTACCAGGACTTAAGGAGTGTCTATTGGTGGAGGAACATGAAGAGAGAAGTGGCAGATTTTGTCAGTAGGTGTTTAGTGTGCCAGCA
AGTGAAGGCACCTAGACAGCGACCAGTCGGGTTGTTGCAACCTTTGAGCGTGCCAGGATGGAAATGGGAGAGTGTGTCGATGGACTTCATTACAGGACTACCCAGGACCC
TAAAGGGCTATACACTGATCTGGGTTGTTGTTGACAGACTCACGAAGTCGACCCACTTTGTGCGAGGGAAATCCACTTACACTGCCAGTAAGTGGGGGCAGTTATACATG
ACAAAGATTGTGAGACTACACGGAGTACCCGTATCCATCATTTCAGACAGAGATGCTCGTTTCATATCGAAGTTCTGGAAAGGACTTCAACTTTCTTTAGGCACGAGGTT
AGACTTCAGCACAGCCTTCCACCCTCAGACTGATGGTCAGACAGAGAGATTGAACCAGGTTTTGGAAGACAGGCGTGCTAGAGTTTTCAGGGAGTTGGGACTCCTATTTG
CATCTAATGGAGTTCGCCTATAA
Protein sequenceShow/hide protein sequence
MHPGSTKMYQDLRSVYWWRNMKREVADFVSRCLVCQQVKAPRQRPVGLLQPLSVPGWKWESVSMDFITGLPRTLKGYTLIWVVVDRLTKSTHFVRGKSTYTASKWGQLYM
TKIVRLHGVPVSIISDRDARFISKFWKGLQLSLGTRLDFSTAFHPQTDGQTERLNQVLEDRRARVFRELGLLFASNGVRL