; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0167591 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0167591
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr06:20800675..20801485
RNA-Seq ExpressionCmc06g0167591
SyntenyCmc06g0167591
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ADN34143.1 copia-type polyprotein [Cucumis melo subsp. melo]5.3e-133100Show/hide
Query:  MFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFTHGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLSNRSPTRSLW
        MFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFTHGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLSNRSPTRSLW
Subjt:  MFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFTHGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLSNRSPTRSLW

Query:  NKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEPEDYKFLLFPEDHDE
        NKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEPEDYKFLLFPEDHDE
Subjt:  NKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEPEDYKFLLFPEDHDE

Query:  PTDIASPSTTPTSPITPQQSRSSSSANSNEGHRGMRSL
        PTDIASPSTTPTSPITPQQSRSSSSANSNEGHRGMRSL
Subjt:  PTDIASPSTTPTSPITPQQSRSSSSANSNEGHRGMRSL

KAA0047979.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.1e-11788.66Show/hide
Query:  KSEVFGMFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFT---HGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLS
        KSEVFGMFKRFKALVEKESGYYIKALRSDRG EFTSNEFKTF  ENGIRR MTVPFT   +GVVERKNRTILNMARSMLK KKMPKEFWAQAV+CA+YLS
Subjt:  KSEVFGMFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFT---HGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLS

Query:  NRSPTRSLWNKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEPEDYKF
        NRSPTRSLWNKTPQ+AWTGRKPSI HLRVFGCMAYAHIP QKRSKLDDKSEK VFVGYDASSK YKLYNP+TKKTIVSRDVVFDEEASWNWNDEPEDYKF
Subjt:  NRSPTRSLWNKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEPEDYKF

Query:  LLFPEDHDEPTDIASPSTTPTSPITPQQSRSSSSANSNEGHRGMRSL
        L FP++HDEP+DIASP   PTSPITPQQS SSSSA+S+EG RGMRSL
Subjt:  LLFPEDHDEPTDIASPSTTPTSPITPQQSRSSSSANSNEGHRGMRSL

KAA0066945.1 copia-type polyprotein [Cucumis melo var. makuwa]6.5e-13198.74Show/hide
Query:  MFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFTHGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLSNRSPTRSLW
        MFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENG RRPMTVPFTHGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLSNRSPTRSLW
Subjt:  MFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFTHGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLSNRSPTRSLW

Query:  NKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEPEDYKFLLFPEDHDE
        NKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQK SKLDDKSEKCVFVGYDASSKDYKLYNPITKKTI SRDVVFDEEASWNWNDEPEDYKFLLFPEDHDE
Subjt:  NKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEPEDYKFLLFPEDHDE

Query:  PTDIASPSTTPTSPITPQQSRSSSSANSNEGHRGMRSL
        PTDIASPSTTPTSPITPQQSRSSSSANSNEGHRGMRSL
Subjt:  PTDIASPSTTPTSPITPQQSRSSSSANSNEGHRGMRSL

TYK03241.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.1e-11788.66Show/hide
Query:  KSEVFGMFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFT---HGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLS
        KSEVFGMFKRFKALVEKESGYYIKALRSDRG EFTSNEFKTF  ENGIRR MTVPFT   +GVVERKNRTILNMARSMLK KKMPKEFWAQAV+CA+YLS
Subjt:  KSEVFGMFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFT---HGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLS

Query:  NRSPTRSLWNKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEPEDYKF
        NRSPTRSLWNKTPQ+AWTGRKPSI HLRVFGCMAYAHIP QKRSKLDDKSEK VFVGYDASSK YKLYNP+TKKTIVSRDVVFDEEASWNWNDEPEDYKF
Subjt:  NRSPTRSLWNKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEPEDYKF

Query:  LLFPEDHDEPTDIASPSTTPTSPITPQQSRSSSSANSNEGHRGMRSL
        L FP++HDEP+DIASP   PTSPITPQQS SSSSA+S+EG RGMRSL
Subjt:  LLFPEDHDEPTDIASPSTTPTSPITPQQSRSSSSANSNEGHRGMRSL

TYK22149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]3.1e-11788.66Show/hide
Query:  KSEVFGMFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFT---HGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLS
        KSEVFGMFKRFKALVEKESGYYIKALRSDRG EFTSNEFKTF  ENGIRR MTVPFT   +GVVERKNRTILNMARSMLK KKMPKEFWAQAV+CA+YLS
Subjt:  KSEVFGMFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFT---HGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLS

Query:  NRSPTRSLWNKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEPEDYKF
        NRSPTRSLWNKTPQ+AWTGRKPSI HLRVFGCMAYAHIP QKRSKLDDKSEK VFVGYDASSK YKLYNP+TKKTIVSRDVVFDEEASWNWNDEPEDYKF
Subjt:  NRSPTRSLWNKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEPEDYKF

Query:  LLFPEDHDEPTDIASPSTTPTSPITPQQSRSSSSANSNEGHRGMRSL
        L FP++HDEP+DIASP   PTSPITPQQS SSSSA+S+EG RGMRSL
Subjt:  LLFPEDHDEPTDIASPSTTPTSPITPQQSRSSSSANSNEGHRGMRSL

TrEMBL top hitse value%identityAlignment
A0A5A7SJX6 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-11788.66Show/hide
Query:  KSEVFGMFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFT---HGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLS
        KSEVFGMFKRFKALVEKESGYYIKALRSDRG EFTSNEFKTF  ENGIRR MTVPFT   +GVVERKNRTILNMARSMLK KKMPKEFWAQAV+CA+YLS
Subjt:  KSEVFGMFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFT---HGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLS

Query:  NRSPTRSLWNKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEPEDYKF
        NRSPTRSLWNKTPQ+AWTGRKPSI HLRVFGCMAYAHIP QKRSKLDDKSEK VFVGYDASSK YKLYNP+TKKTIVSRDVVFDEEASWNWNDEPEDYKF
Subjt:  NRSPTRSLWNKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEPEDYKF

Query:  LLFPEDHDEPTDIASPSTTPTSPITPQQSRSSSSANSNEGHRGMRSL
        L FP++HDEP+DIASP   PTSPITPQQS SSSSA+S+EG RGMRSL
Subjt:  LLFPEDHDEPTDIASPSTTPTSPITPQQSRSSSSANSNEGHRGMRSL

A0A5A7V308 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-11788.66Show/hide
Query:  KSEVFGMFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFT---HGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLS
        KSEVFGMFKRFKALVEKESGYYIKALRSDRG EFTSNEFKTF  ENGIRR MTVPFT   +GVVERKNRTILNMARSMLK KKMPKEFWAQAV+CA+YLS
Subjt:  KSEVFGMFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFT---HGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLS

Query:  NRSPTRSLWNKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEPEDYKF
        NRSPTRSLWNKTPQ+AWTGRKPSI HLRVFGCMAYAHIP QKRSKLDDKSEK VFVGYDASSK YKLYNP+TKKTIVSRDVVFDEEASWNWNDEPEDYKF
Subjt:  NRSPTRSLWNKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEPEDYKF

Query:  LLFPEDHDEPTDIASPSTTPTSPITPQQSRSSSSANSNEGHRGMRSL
        L FP++HDEP+DIASP   PTSPITPQQS SSSSA+S+EG RGMRSL
Subjt:  LLFPEDHDEPTDIASPSTTPTSPITPQQSRSSSSANSNEGHRGMRSL

A0A5A7V3X9 Retrovirus-related Pol polyprotein from transposon TNT 1-941.5e-11788.66Show/hide
Query:  KSEVFGMFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFT---HGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLS
        KSEVFGMFKRFKALVEKESGYYIKALRSDRG EFTSNEFKTF  ENGIRR MTVPFT   +GVVERKNRTILNMARSMLK KKMPKEFWAQAV+CA+YLS
Subjt:  KSEVFGMFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFT---HGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLS

Query:  NRSPTRSLWNKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEPEDYKF
        NRSPTRSLWNKTPQ+AWTGRKPSI HLRVFGCMAYAHIP QKRSKLDDKSEK VFVGYDASSK YKLYNP+TKKTIVSRDVVFDEEASWNWNDEPEDYKF
Subjt:  NRSPTRSLWNKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEPEDYKF

Query:  LLFPEDHDEPTDIASPSTTPTSPITPQQSRSSSSANSNEGHRGMRSL
        L FP++HDEP+DIASP   PTSPITPQQS SSSSA+S+EG RGMRSL
Subjt:  LLFPEDHDEPTDIASPSTTPTSPITPQQSRSSSSANSNEGHRGMRSL

A0A5A7VME3 Copia-type polyprotein3.1e-13198.74Show/hide
Query:  MFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFTHGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLSNRSPTRSLW
        MFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENG RRPMTVPFTHGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLSNRSPTRSLW
Subjt:  MFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFTHGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLSNRSPTRSLW

Query:  NKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEPEDYKFLLFPEDHDE
        NKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQK SKLDDKSEKCVFVGYDASSKDYKLYNPITKKTI SRDVVFDEEASWNWNDEPEDYKFLLFPEDHDE
Subjt:  NKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEPEDYKFLLFPEDHDE

Query:  PTDIASPSTTPTSPITPQQSRSSSSANSNEGHRGMRSL
        PTDIASPSTTPTSPITPQQSRSSSSANSNEGHRGMRSL
Subjt:  PTDIASPSTTPTSPITPQQSRSSSSANSNEGHRGMRSL

E5GCE4 Copia-type polyprotein2.6e-133100Show/hide
Query:  MFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFTHGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLSNRSPTRSLW
        MFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFTHGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLSNRSPTRSLW
Subjt:  MFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFTHGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLSNRSPTRSLW

Query:  NKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEPEDYKFLLFPEDHDE
        NKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEPEDYKFLLFPEDHDE
Subjt:  NKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEPEDYKFLLFPEDHDE

Query:  PTDIASPSTTPTSPITPQQSRSSSSANSNEGHRGMRSL
        PTDIASPSTTPTSPITPQQSRSSSSANSNEGHRGMRSL
Subjt:  PTDIASPSTTPTSPITPQQSRSSSSANSNEGHRGMRSL

SwissProt top hitse value%identityAlignment
P04146 Copia protein4.5e-3444.92Show/hide
Query:  KSEVFGMFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFT---HGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLS
        KS+VF MF+ F A  E      +  L  D G E+ SNE + F  + GI   +TVP T   +GV ER  RTI   AR+M+   K+ K FW +AV  A YL 
Subjt:  KSEVFGMFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFT---HGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLS

Query:  NRSPTRSL--WNKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDE
        NR P+R+L   +KTP + W  +KP + HLRVFG   Y HI   K+ K DDKS K +FVGY+ +   +KL++ + +K IV+RDVV DE
Subjt:  NRSPTRSL--WNKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDE

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-946.5e-4946.85Show/hide
Query:  KSEVFGMFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFT---HGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLS
        K +VF +F++F ALVE+E+G  +K LRSD G E+TS EF+ + + +GIR   TVP T   +GV ER NRTI+   RSML+  K+PK FW +AV+ A YL 
Subjt:  KSEVFGMFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFT---HGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLS

Query:  NRSPTRSLWNKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEPEDYKF
        NRSP+  L  + P++ WT ++ S +HL+VFGC A+AH+P ++R+KLDDKS  C+F+GY      Y+L++P+ KK I SRDVVF E       D  E  K 
Subjt:  NRSPTRSLWNKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEPEDYKF

Query:  LLFPEDHDEPTDIASPSTTPTS
         + P        I S S  PTS
Subjt:  LLFPEDHDEPTDIASPSTTPTS

Q12337 Transposon Ty2-GR1 Gag-Pol polyprotein1.1e-0825.12Show/hide
Query:  KSEVFGMFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPF---THGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLS
        +  +  +F    A ++ +    +  ++ DRG E+T+     FF   GI    T       HGV ER NRT+LN  R++L    +P   W  AV+ +  + 
Subjt:  KSEVFGMFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPF---THGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLS

Query:  NRSPTRSLWNKTPQKAWTGRK-PSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGY----DASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEP
        N     SL   +P+K  + R+   +A L +   + +           D K       GY      +S  Y +Y P  KKT+ + + V  +        + 
Subjt:  NRSPTRSLWNKTPQKAWTGRK-PSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGY----DASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEP

Query:  EDYKFLLFPED
         DY  L F +D
Subjt:  EDYKFLLFPED

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE13.0e-2235.59Show/hide
Query:  KSEVFGMFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFT---HGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLS
        KS+V   F  FK L+E      I    SD G EF +     +F+++GI    + P T   +G+ ERK+R I+    ++L    +PK +W  A   A+YL 
Subjt:  KSEVFGMFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFT---HGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLS

Query:  NRSPTRSLWNKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEP-EDYK
        NR PT  L  ++P +   G  P+   LRVFGC  Y  +    + KLDDKS +CVF+GY  +   Y   +  T +  +SR V FDE      N  P  +Y 
Subjt:  NRSPTRSLWNKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEP-EDYK

Query:  FLLFP--EDHDEPTDIASPSTT-PT-SPITPQQSRS
          L P  E   E + + SP TT PT +P+ P  S S
Subjt:  FLLFP--EDHDEPTDIASPSTT-PT-SPITPQQSRS

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.6e-2336.22Show/hide
Query:  KSEVFGMFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRR---PMTVPFTHGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLS
        KS+V   F  FK+LVE      I  L SD G EF     + + +++GI     P   P  +G+ ERK+R I+ M  ++L    +PK +W  A   A+YL 
Subjt:  KSEVFGMFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRR---PMTVPFTHGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYLS

Query:  NRSPTRSLWNKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDE
        NR PT  L  ++P +   G+ P+   L+VFGC  Y  +    R KL+DKS++C F+GY  +   Y   +  T +   SR V FDE
Subjt:  NRSPTRSLWNKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDE

Arabidopsis top hitse value%identityAlignment
ATMG00710.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein1.5e-0835.29Show/hide
Query:  NRTILNMARSMLKSKKMPKEFWAQAVKCAMYLSNRSPTRSLWNKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEK
        NRTI+   RSML    +PK F A A   A+++ N+ P+ ++    P + W    P+ ++LR FGC+AY H    K      K E+
Subjt:  NRTILNMARSMLKSKKMPKEFWAQAVKCAMYLSNRSPTRSLWNKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACCGATCAAACCAAGTTCTTTTGAAATCAGAAGTATTTGGCATGTTCAAGAGATTTAAAGCTCTTGTTGAAAAAGAAAGTGGTTATTACATTAAAGCTTTG
AGATCAGACAGGGGAGATGAATTCACTTCAAATGAATTCAAAACCTTTTTCGCAGAAAATGGAATTCGTCGACCTATGACAGTTCCATTTACTCATGGTGTTGTT
GAAAGGAAGAATCGAACAATACTTAACATGGCTCGAAGCATGTTGAAGAGCAAGAAGATGCCGAAAGAATTTTGGGCACAAGCTGTTAAATGTGCAATGTACTTG
TCAAATCGTTCCCCTACTAGAAGCTTATGGAACAAAACTCCTCAAAAAGCATGGACAGGAAGAAAACCATCCATTGCTCATTTGAGAGTATTTGGATGCATGGCT
TATGCGCATATACCTTATCAAAAGCGTAGTAAGCTTGATGATAAAAGTGAGAAATGTGTTTTTGTTGGCTATGATGCAAGCTCAAAAGACTACAAGCTTTATAAT
CCTATTACAAAGAAAACGATTGTAAGTAGAGATGTTGTGTTTGATGAAGAAGCATCATGGAATTGGAATGACGAACCAGAAGATTACAAATTTTTGCTTTTTCCC
GAGGATCATGATGAGCCTACTGACATTGCTTCTCCATCAACAACACCAACATCGCCAATTACTCCACAACAAAGCAGATCTTCATCATCTGCAAATTCAAATGAA
GGACATCGTGGCATGAGAAGCTTATGA
mRNA sequenceShow/hide mRNA sequence
ATGGACCGATCAAACCAAGTTCTTTTGAAATCAGAAGTATTTGGCATGTTCAAGAGATTTAAAGCTCTTGTTGAAAAAGAAAGTGGTTATTACATTAAAGCTTTG
AGATCAGACAGGGGAGATGAATTCACTTCAAATGAATTCAAAACCTTTTTCGCAGAAAATGGAATTCGTCGACCTATGACAGTTCCATTTACTCATGGTGTTGTT
GAAAGGAAGAATCGAACAATACTTAACATGGCTCGAAGCATGTTGAAGAGCAAGAAGATGCCGAAAGAATTTTGGGCACAAGCTGTTAAATGTGCAATGTACTTG
TCAAATCGTTCCCCTACTAGAAGCTTATGGAACAAAACTCCTCAAAAAGCATGGACAGGAAGAAAACCATCCATTGCTCATTTGAGAGTATTTGGATGCATGGCT
TATGCGCATATACCTTATCAAAAGCGTAGTAAGCTTGATGATAAAAGTGAGAAATGTGTTTTTGTTGGCTATGATGCAAGCTCAAAAGACTACAAGCTTTATAAT
CCTATTACAAAGAAAACGATTGTAAGTAGAGATGTTGTGTTTGATGAAGAAGCATCATGGAATTGGAATGACGAACCAGAAGATTACAAATTTTTGCTTTTTCCC
GAGGATCATGATGAGCCTACTGACATTGCTTCTCCATCAACAACACCAACATCGCCAATTACTCCACAACAAAGCAGATCTTCATCATCTGCAAATTCAAATGAA
GGACATCGTGGCATGAGAAGCTTATGA
Protein sequenceShow/hide protein sequence
MDRSNQVLLKSEVFGMFKRFKALVEKESGYYIKALRSDRGDEFTSNEFKTFFAENGIRRPMTVPFTHGVVERKNRTILNMARSMLKSKKMPKEFWAQAVKCAMYL
SNRSPTRSLWNKTPQKAWTGRKPSIAHLRVFGCMAYAHIPYQKRSKLDDKSEKCVFVGYDASSKDYKLYNPITKKTIVSRDVVFDEEASWNWNDEPEDYKFLLFP
EDHDEPTDIASPSTTPTSPITPQQSRSSSSANSNEGHRGMRSL