; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0167921 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0167921
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
Genome locationCMiso1.1chr06:21363485..21364231
RNA-Seq ExpressionCmc06g0167921
SyntenyCmc06g0167921
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAO73529.1 gag-pol polyprotein [Glycine max]5.6e-8766.13Show/hide
Query:  MKGEFEMSMVGELTFFLGFQIKQEEIDIFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCA
        M+ EFEMS+VGELT+FLG Q+KQ E  IF SQ KY KN+V KFGM+ A  KRTPA T+LK++K+ A   +D SLYRS+I SLLYLT SRP+IT+AVGVCA
Subjt:  MKGEFEMSMVGELTFFLGFQIKQEEIDIFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCA

Query:  RYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLL
        RYQ +P+ SHL+ VK ILKY+ GT +YG+ Y   +  +LV YCDA W G ++DRKSTSGGC F+  NN+ +WF+KKQN V LST E EYI A SSCSQL+
Subjt:  RYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLL

Query:  WMKQMLEEYGVTQSSMVLYCDNMSAISISKNPVQHSRTKHIDIHHHFI
        WMKQML+EY V Q  M LYCDNMSAI+ISKNPVQHSRTKHIDI HH+I
Subjt:  WMKQMLEEYGVTQSSMVLYCDNMSAISISKNPVQHSRTKHIDIHHHFI

KAA0056162.1 putative mitochondrial protein [Cucumis melo var. makuwa]8.7e-9674.6Show/hide
Query:  MKGEFEMSMVGELTFFLGFQIKQEEIDIFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCA
        MKGEFE+SMVGELTFFLGFQIKQ +  IFFSQEKY KNL+SKFGMDKAK          K+TK+  R+K+DSSLYRSII SLLYLT SRP+I F VGVCA
Subjt:  MKGEFEMSMVGELTFFLGFQIKQEEIDIFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCA

Query:  RYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLL
        RYQ D RTSHLHS K ILKYI GT N+GLWY FDTT VLV YCDA W  CS+DRKSTS GC FF  NNIAAWF+KKQNSV LST E +YI   SSCSQLL
Subjt:  RYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLL

Query:  WMKQMLEEYGVTQSSMVLYCDNMSAISISKNPVQHSRTKHIDIHHHFI
        WMKQM+EEYG+ Q SMVLYCDN+S I+ISKNPVQHSRTK IDI HHFI
Subjt:  WMKQMLEEYGVTQSSMVLYCDNMSAISISKNPVQHSRTKHIDIHHHFI

KAA0062326.1 putative mitochondrial protein [Cucumis melo var. makuwa]2.8e-8678.92Show/hide
Query:  MDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCARYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCD
        M KAK KRTP AT+LKMTK+I  +K+D++LYRSII SLLYL  SRP+I FAVGVCARYQVDPRTSHLHS K ILKY++GTFNYG+WY FDTTGVLV YCD
Subjt:  MDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCARYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCD

Query:  AHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLLWMKQMLEEYGVTQSSMVLYCDNMSAISISKNPVQHSRTKHIDIH
        A W GCS+DRKSTSGGC FF  NN+AAWF+KKQNSV  ST E +YI A SSCSQ +WMKQMLEEYG+TQSSMVLYCDN+SAISISKNPVQHSRTKHIDI 
Subjt:  AHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLLWMKQMLEEYGVTQSSMVLYCDNMSAISISKNPVQHSRTKHIDIH

Query:  HHFI
        HHFI
Subjt:  HHFI

TYJ96615.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.8e-9677.31Show/hide
Query:  GELTFFLGFQIKQEEIDIFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCARYQVDPRTSH
        G+LTFFLGFQIKQEE  IFFSQEKY KN VSKFG DKAKLKRT AAT+LKMTK+   +K+DSSLYRS I S LYL  S+ +I FA+GVCARYQ +P+TSH
Subjt:  GELTFFLGFQIKQEEIDIFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCARYQVDPRTSH

Query:  LHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLLWMKQMLEEYG
        LHS K ILKYIA T NY LWY FDTTGVLV YCDA W GCS+DRKSTS GC FF  NNIA WF+KKQNSV+LST E EYI A SSCSQLL MKQM+EEYG
Subjt:  LHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLLWMKQMLEEYG

Query:  VTQSSMVLYCDNMSAISISKNPVQHSRTKHIDIHHHFI
        +TQSS VLYCDN+SAISISKNPVQHSRTKHIDIHHH I
Subjt:  VTQSSMVLYCDNMSAISISKNPVQHSRTKHIDIHHHFI

TYK26648.1 putative mitochondrial protein [Cucumis melo var. makuwa]1.6e-8679.41Show/hide
Query:  MDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCARYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCD
        M KAK KRTP AT+LKMTK+I  +K+D++LYRSII SLLYL  SRP+I FAVGVCARYQVDPRTSHLHS K ILKY++GTFNYGLWY FDTTGVLV YCD
Subjt:  MDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCARYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCD

Query:  AHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLLWMKQMLEEYGVTQSSMVLYCDNMSAISISKNPVQHSRTKHIDIH
        A W GCS+DRKSTSGGC FF  NN+AAWF+KKQNSV  ST E +YI A SSCSQ +WMKQMLEEYG+TQSSMVLYCDN+SAISISKNPVQHSRTKHIDI 
Subjt:  AHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLLWMKQMLEEYGVTQSSMVLYCDNMSAISISKNPVQHSRTKHIDIH

Query:  HHFI
        HHFI
Subjt:  HHFI

TrEMBL top hitse value%identityAlignment
A0A5A7UJW3 Putative mitochondrial protein4.2e-9674.6Show/hide
Query:  MKGEFEMSMVGELTFFLGFQIKQEEIDIFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCA
        MKGEFE+SMVGELTFFLGFQIKQ +  IFFSQEKY KNL+SKFGMDKAK          K+TK+  R+K+DSSLYRSII SLLYLT SRP+I F VGVCA
Subjt:  MKGEFEMSMVGELTFFLGFQIKQEEIDIFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCA

Query:  RYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLL
        RYQ D RTSHLHS K ILKYI GT N+GLWY FDTT VLV YCDA W  CS+DRKSTS GC FF  NNIAAWF+KKQNSV LST E +YI   SSCSQLL
Subjt:  RYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLL

Query:  WMKQMLEEYGVTQSSMVLYCDNMSAISISKNPVQHSRTKHIDIHHHFI
        WMKQM+EEYG+ Q SMVLYCDN+S I+ISKNPVQHSRTK IDI HHFI
Subjt:  WMKQMLEEYGVTQSSMVLYCDNMSAISISKNPVQHSRTKHIDIHHHFI

A0A5A7V7C7 Putative mitochondrial protein1.4e-8678.92Show/hide
Query:  MDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCARYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCD
        M KAK KRTP AT+LKMTK+I  +K+D++LYRSII SLLYL  SRP+I FAVGVCARYQVDPRTSHLHS K ILKY++GTFNYG+WY FDTTGVLV YCD
Subjt:  MDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCARYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCD

Query:  AHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLLWMKQMLEEYGVTQSSMVLYCDNMSAISISKNPVQHSRTKHIDIH
        A W GCS+DRKSTSGGC FF  NN+AAWF+KKQNSV  ST E +YI A SSCSQ +WMKQMLEEYG+TQSSMVLYCDN+SAISISKNPVQHSRTKHIDI 
Subjt:  AHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLLWMKQMLEEYGVTQSSMVLYCDNMSAISISKNPVQHSRTKHIDIH

Query:  HHFI
        HHFI
Subjt:  HHFI

A0A5D3BDS2 Gag-pol polyprotein8.5e-9777.31Show/hide
Query:  GELTFFLGFQIKQEEIDIFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCARYQVDPRTSH
        G+LTFFLGFQIKQEE  IFFSQEKY KN VSKFG DKAKLKRT AAT+LKMTK+   +K+DSSLYRS I S LYL  S+ +I FA+GVCARYQ +P+TSH
Subjt:  GELTFFLGFQIKQEEIDIFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCARYQVDPRTSH

Query:  LHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLLWMKQMLEEYG
        LHS K ILKYIA T NY LWY FDTTGVLV YCDA W GCS+DRKSTS GC FF  NNIA WF+KKQNSV+LST E EYI A SSCSQLL MKQM+EEYG
Subjt:  LHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLLWMKQMLEEYG

Query:  VTQSSMVLYCDNMSAISISKNPVQHSRTKHIDIHHHFI
        +TQSS VLYCDN+SAISISKNPVQHSRTKHIDIHHH I
Subjt:  VTQSSMVLYCDNMSAISISKNPVQHSRTKHIDIHHHFI

A0A5D3DT11 Putative mitochondrial protein8.0e-8779.41Show/hide
Query:  MDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCARYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCD
        M KAK KRTP AT+LKMTK+I  +K+D++LYRSII SLLYL  SRP+I FAVGVCARYQVDPRTSHLHS K ILKY++GTFNYGLWY FDTTGVLV YCD
Subjt:  MDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCARYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCD

Query:  AHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLLWMKQMLEEYGVTQSSMVLYCDNMSAISISKNPVQHSRTKHIDIH
        A W GCS+DRKSTSGGC FF  NN+AAWF+KKQNSV  ST E +YI A SSCSQ +WMKQMLEEYG+TQSSMVLYCDN+SAISISKNPVQHSRTKHIDI 
Subjt:  AHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLLWMKQMLEEYGVTQSSMVLYCDNMSAISISKNPVQHSRTKHIDIH

Query:  HHFI
        HHFI
Subjt:  HHFI

Q84VH6 Gag-pol polyprotein2.7e-8766.13Show/hide
Query:  MKGEFEMSMVGELTFFLGFQIKQEEIDIFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCA
        M+ EFEMS+VGELT+FLG Q+KQ E  IF SQ KY KN+V KFGM+ A  KRTPA T+LK++K+ A   +D SLYRS+I SLLYLT SRP+IT+AVGVCA
Subjt:  MKGEFEMSMVGELTFFLGFQIKQEEIDIFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCA

Query:  RYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLL
        RYQ +P+ SHL+ VK ILKY+ GT +YG+ Y   +  +LV YCDA W G ++DRKSTSGGC F+  NN+ +WF+KKQN V LST E EYI A SSCSQL+
Subjt:  RYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLL

Query:  WMKQMLEEYGVTQSSMVLYCDNMSAISISKNPVQHSRTKHIDIHHHFI
        WMKQML+EY V Q  M LYCDNMSAI+ISKNPVQHSRTKHIDI HH+I
Subjt:  WMKQMLEEYGVTQSSMVLYCDNMSAISISKNPVQHSRTKHIDIHHHFI

SwissProt top hitse value%identityAlignment
P04146 Copia protein5.4e-3233.73Show/hide
Query:  EFEMSMVGELTFFLGFQIKQEEIDIFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKID-SSLYRSIIRSLLY-LTTSRPNITFAVGVCAR
        +F M+ + E+  F+G +I+ +E  I+ SQ  YVK ++SKF M+      TP  +  K+   +     D ++  RS+I  L+Y +  +RP++T AV + +R
Subjt:  EFEMSMVGELTFFLGFQIKQEEIDIFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKID-SSLYRSIIRSLLY-LTTSRPNITFAVGVCAR

Query:  YQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTT--GVLVEYCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQL
        Y     +    ++K +L+Y+ GT +  L +  +      ++ Y D+ W G   DRKST+G  F  F  N+  W  K+QNSV  S+TE EY+    +  + 
Subjt:  YQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTT--GVLVEYCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQL

Query:  LWMKQMLEEYGV-TQSSMVLYCDNMSAISISKNPVQHSRTKHIDIHHHF
        LW+K +L    +  ++ + +Y DN   ISI+ NP  H R KHIDI +HF
Subjt:  LWMKQMLEEYGV-TQSSMVLYCDNMSAISISKNPVQHSRTKHIDIHHHF

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.9e-3737.55Show/hide
Query:  FEMSMVGELTFFLGFQIKQEEID--IFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKIDSS------LYRSIIRSLLY-LTTSRPNITFA
        F+M  +G     LG +I +E     ++ SQEKY++ ++ +F M  AK   TP A +LK++K +    ++         Y S + SL+Y +  +RP+I  A
Subjt:  FEMSMVGELTFFLGFQIKQEEID--IFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKIDSS------LYRSIIRSLLY-LTTSRPNITFA

Query:  VGVCARYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSS
        VGV +R+  +P   H  +VK IL+Y+ GT    L +   +  +L  Y DA   G  ++RKS++G  F F    I +W +K Q  V LSTTE EYI A  +
Subjt:  VGVCARYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSS

Query:  CSQLLWMKQMLEEYGVTQSSMVLYCDNMSAISISKNPVQHSRTKHIDIHHHFI
          +++W+K+ L+E G+ Q   V+YCD+ SAI +SKN + H+RTKHID+ +H+I
Subjt:  CSQLLWMKQMLEEYGVTQSSMVLYCDNMSAISISKNPVQHSRTKHIDIHHHFI

P92519 Uncharacterized mitochondrial protein AtMg008103.4e-2634.65Show/hide
Query:  MKGEFEMSMVGELTFFLGFQIKQEEIDIFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCA
        +   F M  +G + +FLG QIK     +F SQ KY + +++  GM   K   TP    L  + + A+   D S +RSI+ +L YLT +RP+I++AV +  
Subjt:  MKGEFEMSMVGELTFFLGFQIKQEEIDIFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCA

Query:  RYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVE-YCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQL
        +   +P  +    +K +L+Y+ GT  +GL YI   + + V+ +CD+ W GC++ R+ST+G C  F   NI +W  K+Q +V  S+TE EY     + ++L
Subjt:  RYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVE-YCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQL

Query:  LW
         W
Subjt:  LW

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE18.9e-3536.55Show/hide
Query:  ELTFFLGFQIKQEEIDIFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCARYQVDPRTSHL
        EL +FLG + K+    +  SQ +Y+ +L+++  M  AK   TP A + K++     +  D + YR I+ SL YL  +RP+I++AV   +++   P   HL
Subjt:  ELTFFLGFQIKQEEIDIFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCARYQVDPRTSHL

Query:  HSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLLWMKQMLEEYGV
         ++K IL+Y+AGT N+G++     T  L  Y DA W G  +D  ST+ G   +  ++  +W +KKQ  V  S+TE EY    ++ S++ W+  +L E G+
Subjt:  HSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLLWMKQMLEEYGV

Query:  TQS-SMVLYCDNMSAISISKNPVQHSRTKHIDIHHHFI
          +   V+YCDN+ A  +  NPV HSR KHI I +HFI
Subjt:  TQS-SMVLYCDNMSAISISKNPVQHSRTKHIDIHHHFI

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE22.0e-3436.13Show/hide
Query:  ELTFFLGFQIKQEEIDIFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCARYQVDPRTSHL
        +L +FLG + K+    +  SQ +Y  +L+++  M  AK   TP AT+ K+T +   +  D + YR I+ SL YL  +RP++++AV   ++Y   P   H 
Subjt:  ELTFFLGFQIKQEEIDIFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCARYQVDPRTSHL

Query:  HSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLLWMKQMLEEYGV
        +++K +L+Y+AGT ++G++     T  L  Y DA W G ++D  ST+ G   +  ++  +W +KKQ  V  S+TE EY    ++ S+L W+  +L E G+
Subjt:  HSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLLWMKQMLEEYGV

Query:  TQS-SMVLYCDNMSAISISKNPVQHSRTKHIDIHHHFI
          S   V+YCDN+ A  +  NPV HSR KHI + +HFI
Subjt:  TQS-SMVLYCDNMSAISISKNPVQHSRTKHIDIHHHFI

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.6e-3132.13Show/hide
Query:  MKGEFEMSMVGELTFFLGFQIKQEEIDIFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCA
        +K  F++  +G L +FLG +I +    I   Q KY  +L+ + G+   K    P   ++  + +     +D+  YR +I  L+YL  +R +I+FAV   +
Subjt:  MKGEFEMSMVGELTFFLGFQIKQEEIDIFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCA

Query:  RYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLL
        ++   PR +H  +V  IL YI GT   GL+Y       L  + DA +  C + R+ST+G C  F   ++ +W +KKQ  V  S+ E EY     +  +++
Subjt:  RYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLL

Query:  WMKQMLEEYGVTQSS-MVLYCDNMSAISISKNPVQHSRTKHIDIHHHFI
        W+ Q   E  +  S   +L+CDN +AI I+ N V H RTKHI+   H +
Subjt:  WMKQMLEEYGVTQSS-MVLYCDNMSAISISKNPVQHSRTKHIDIHHHFI

ATMG00240.1 Gag-Pol-related retrotransposon family protein6.0e-1034.18Show/hide
Query:  LYLTTSRPNITFAVGVCARYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCDAHWVGCSNDRKSTSGGC
        +YLT +RP++TFAV   +++    RT+ + +V  +L Y+ GT   GL+Y   +   L  + D+ W  C + R+S +G C
Subjt:  LYLTTSRPNITFAVGVCARYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCDAHWVGCSNDRKSTSGGC

ATMG00810.1 DNA/RNA polymerases superfamily protein2.4e-2734.65Show/hide
Query:  MKGEFEMSMVGELTFFLGFQIKQEEIDIFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCA
        +   F M  +G + +FLG QIK     +F SQ KY + +++  GM   K   TP    L  + + A+   D S +RSI+ +L YLT +RP+I++AV +  
Subjt:  MKGEFEMSMVGELTFFLGFQIKQEEIDIFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCA

Query:  RYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVE-YCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQL
        +   +P  +    +K +L+Y+ GT  +GL YI   + + V+ +CD+ W GC++ R+ST+G C  F   NI +W  K+Q +V  S+TE EY     + ++L
Subjt:  RYQVDPRTSHLHSVKCILKYIAGTFNYGLWYIFDTTGVLVE-YCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQL

Query:  LW
         W
Subjt:  LW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGGAGAATTTGAAATGAGCATGGTTGGTGAGCTAACATTTTTCCTGGGATTTCAAATCAAGCAAGAAGAAATAGACATCTTCTTTTCTCAAGAGAAATATGTAAA
GAATCTAGTCTCAAAGTTTGGAATGGATAAGGCCAAACTCAAACGCACACCAGCTGCTACTAATTTGAAAATGACAAAGAATATCGCTAGACAGAAGATTGATTCAAGCC
TGTATCGAAGTATTATTCGAAGCTTACTCTACCTGACAACCAGTAGACCGAATATTACATTTGCAGTAGGGGTATGTGCCCGTTATCAGGTGGATCCCCGAACATCTCAT
CTTCATAGTGTTAAATGCATACTAAAGTATATAGCAGGTACTTTTAATTATGGCCTCTGGTATATATTTGATACAACTGGAGTTCTTGTAGAGTACTGTGATGCACACTG
GGTAGGATGCTCGAATGATCGAAAAAGCACATCTGGCGGCTGTTTTTTTTTTTTTTGGAACAACATAGCTGCTTGGTTCAACAAGAAACAAAATAGTGTGTTCTTATCCA
CTACAGAAGTCGAATACATTGTTGCTAGGAGTAGCTGTTCGCAACTCCTCTGGATGAAACAAATGTTGGAAGAATATGGTGTCACACAATCGTCCATGGTTCTCTACTGT
GATAACATGAGTGCAATAAGCATCTCCAAAAATCCTGTCCAACATAGTCGCACAAAACACATCGACATCCATCATCACTTTATCTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAAGGAGAATTTGAAATGAGCATGGTTGGTGAGCTAACATTTTTCCTGGGATTTCAAATCAAGCAAGAAGAAATAGACATCTTCTTTTCTCAAGAGAAATATGTAAA
GAATCTAGTCTCAAAGTTTGGAATGGATAAGGCCAAACTCAAACGCACACCAGCTGCTACTAATTTGAAAATGACAAAGAATATCGCTAGACAGAAGATTGATTCAAGCC
TGTATCGAAGTATTATTCGAAGCTTACTCTACCTGACAACCAGTAGACCGAATATTACATTTGCAGTAGGGGTATGTGCCCGTTATCAGGTGGATCCCCGAACATCTCAT
CTTCATAGTGTTAAATGCATACTAAAGTATATAGCAGGTACTTTTAATTATGGCCTCTGGTATATATTTGATACAACTGGAGTTCTTGTAGAGTACTGTGATGCACACTG
GGTAGGATGCTCGAATGATCGAAAAAGCACATCTGGCGGCTGTTTTTTTTTTTTTTGGAACAACATAGCTGCTTGGTTCAACAAGAAACAAAATAGTGTGTTCTTATCCA
CTACAGAAGTCGAATACATTGTTGCTAGGAGTAGCTGTTCGCAACTCCTCTGGATGAAACAAATGTTGGAAGAATATGGTGTCACACAATCGTCCATGGTTCTCTACTGT
GATAACATGAGTGCAATAAGCATCTCCAAAAATCCTGTCCAACATAGTCGCACAAAACACATCGACATCCATCATCACTTTATCTGA
Protein sequenceShow/hide protein sequence
MKGEFEMSMVGELTFFLGFQIKQEEIDIFFSQEKYVKNLVSKFGMDKAKLKRTPAATNLKMTKNIARQKIDSSLYRSIIRSLLYLTTSRPNITFAVGVCARYQVDPRTSH
LHSVKCILKYIAGTFNYGLWYIFDTTGVLVEYCDAHWVGCSNDRKSTSGGCFFFFWNNIAAWFNKKQNSVFLSTTEVEYIVARSSCSQLLWMKQMLEEYGVTQSSMVLYC
DNMSAISISKNPVQHSRTKHIDIHHHFI