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Cmc06g0168071 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0168071
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr06:21661244..21661666
RNA-Seq ExpressionCmc06g0168071
SyntenyCmc06g0168071
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR032567 - LDOC1-related
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056238.1 uncharacterized protein E6C27_scaffold226G00020 [Cucumis melo var. makuwa]1.1e-7197.14Show/hide
Query:  MPHELPKTLPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPF
        MPHELPKTLPLRQEILDHEIELVL ARTKPPTKNAYRMAPLELAELRKQLNEFLVA+FIKPAKA YGTPVLFQKKKDESLRLCIDYRALNKVTV+NRYPF
Subjt:  MPHELPKTLPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPF

Query:  PIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC
        PIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC
Subjt:  PIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC

TYK05260.1 uncharacterized protein E5676_scaffold108G00740 [Cucumis melo var. makuwa]1.1e-7197.14Show/hide
Query:  MPHELPKTLPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPF
        MPHELPKTLPLRQEILDHEIELVL ARTKPPTKNAYRMAPLELAELRKQLNEFLVA+FIKPAKA YGTPVLFQKKKDESLRLCIDYRALNKVTV+NRYPF
Subjt:  MPHELPKTLPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPF

Query:  PIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC
        PIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC
Subjt:  PIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC

XP_022150099.1 uncharacterized protein LOC111018360 [Momordica charantia]7.9e-5479.29Show/hide
Query:  MPHELPKTLPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPF
        MP  LPKTLP R+ I DHEIEL+ GA  KPP KNAYRMAP ELAELRKQL+E L A FI+PAKAP+G PVLFQKKKD +LRLCIDYRALNKVTVRN+YP 
Subjt:  MPHELPKTLPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPF

Query:  PIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC
        PII DLFDQL GA+YFTKLDL+SGYYQVRIA+GD PKTTC
Subjt:  PIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC

XP_022975516.1 uncharacterized protein LOC111474945, partial [Cucurbita maxima]1.0e-5378.57Show/hide
Query:  MPHELPKTLPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPF
        MP  LP+TLP R+ I DHEIEL+ G   KPP KNAYRMAP ELAELRKQL+E L A FI+PAKAPYG PVLFQKKKD +LRLCIDYRALNKVTVRN+YP 
Subjt:  MPHELPKTLPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPF

Query:  PIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC
        PII+DLFDQL GA+YFTKLDL+SGYYQVRIA+GD PKTTC
Subjt:  PIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC

XP_023537907.1 uncharacterized protein LOC111798805 [Cucurbita pepo subsp. pepo]1.8e-5378.57Show/hide
Query:  MPHELPKTLPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPF
        MP  LP+TLP R+ I DHEIEL+ G   KPP KNAYRMAP ELAELRKQL+E L A FI+PAKAPYG PVLFQKKKD +LRLCIDYRALNKVTVRN+YP 
Subjt:  MPHELPKTLPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPF

Query:  PIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC
        PII+DLFDQL GA+YFTKLDL+SGYYQVRIA+GD PKTTC
Subjt:  PIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC

TrEMBL top hitse value%identityAlignment
A0A5A7UAP0 Uncharacterized protein8.5e-5477.86Show/hide
Query:  MPHELPKTLPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPF
        MP  LPK+LP R+ ++DHEIELV GA  KPPTKNAYRMAP ELAELRKQL+E L A FIKPAKAPYG PVLFQ+KKD SLRLCIDYRALNK+T+RN+YP 
Subjt:  MPHELPKTLPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPF

Query:  PIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC
        PII DLFD L GA+YF+KLDL+SGYYQVRIA+GD PKTTC
Subjt:  PIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC

A0A5A7UMB8 Chromo domain-containing protein5.3e-7297.14Show/hide
Query:  MPHELPKTLPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPF
        MPHELPKTLPLRQEILDHEIELVL ARTKPPTKNAYRMAPLELAELRKQLNEFLVA+FIKPAKA YGTPVLFQKKKDESLRLCIDYRALNKVTV+NRYPF
Subjt:  MPHELPKTLPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPF

Query:  PIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC
        PIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC
Subjt:  PIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC

A0A5D3C1M6 Chromo domain-containing protein5.3e-7297.14Show/hide
Query:  MPHELPKTLPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPF
        MPHELPKTLPLRQEILDHEIELVL ARTKPPTKNAYRMAPLELAELRKQLNEFLVA+FIKPAKA YGTPVLFQKKKDESLRLCIDYRALNKVTV+NRYPF
Subjt:  MPHELPKTLPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPF

Query:  PIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC
        PIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC
Subjt:  PIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC

A0A6J1D906 Reverse transcriptase3.8e-5479.29Show/hide
Query:  MPHELPKTLPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPF
        MP  LPKTLP R+ I DHEIEL+ GA  KPP KNAYRMAP ELAELRKQL+E L A FI+PAKAP+G PVLFQKKKD +LRLCIDYRALNKVTVRN+YP 
Subjt:  MPHELPKTLPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPF

Query:  PIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC
        PII DLFDQL GA+YFTKLDL+SGYYQVRIA+GD PKTTC
Subjt:  PIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC

A0A6J1IEF9 uncharacterized protein LOC1114749455.0e-5478.57Show/hide
Query:  MPHELPKTLPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPF
        MP  LP+TLP R+ I DHEIEL+ G   KPP KNAYRMAP ELAELRKQL+E L A FI+PAKAPYG PVLFQKKKD +LRLCIDYRALNKVTVRN+YP 
Subjt:  MPHELPKTLPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPF

Query:  PIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC
        PII+DLFDQL GA+YFTKLDL+SGYYQVRIA+GD PKTTC
Subjt:  PIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC

SwissProt top hitse value%identityAlignment
P0CT41 Transposon Tf2-12 polyprotein2.3e-1635.66Show/hide
Query:  LPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPFPIINDLFD
        LP   + L+ E+EL      + P +N Y + P ++  +  ++N+ L +  I+ +KA    PV+F  KK+ +LR+ +DY+ LNK    N YP P+I  L  
Subjt:  LPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPFPIINDLFD

Query:  QLDGAQYFTKLDLQSGYYQVRIAQGDGPK
        ++ G+  FTKLDL+S Y+ +R+ +GD  K
Subjt:  QLDGAQYFTKLDLQSGYYQVRIAQGDGPK

P31843 RNA-directed DNA polymerase homolog5.4e-2170.97Show/hide
Query:  SLRLCIDYRALNKVTVRNRYPFPIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC
        SLR+CIDYRAL KVT++N+YP P ++DLFD+L  A +FTKLDL+SGY+QVRIA+GD PKTTC
Subjt:  SLRLCIDYRALNKVTVRNRYPFPIINDLFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKTTC

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein2.0e-2038.35Show/hide
Query:  PKTLPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPFPIIND
        P+   +    + H+IE+  GAR   P    Y +      E+ K + + L  KFI P+K+P  +PV+   KKD + RLC+DYR LNK T+ + +P P I++
Subjt:  PKTLPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPFPIIND

Query:  LFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKT
        L  ++  AQ FT LDL SGY+Q+ +   D  KT
Subjt:  LFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKT

Q99315 Transposon Ty3-G Gag-Pol polyprotein2.0e-2038.35Show/hide
Query:  PKTLPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPFPIIND
        P+   +    + H+IE+  GAR   P    Y +      E+ K + + L  KFI P+K+P  +PV+   KKD + RLC+DYR LNK T+ + +P P I++
Subjt:  PKTLPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPFPIIND

Query:  LFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKT
        L  ++  AQ FT LDL SGY+Q+ +   D  KT
Subjt:  LFDQLDGAQYFTKLDLQSGYYQVRIAQGDGPKT

Q9UR07 Transposon Tf2-11 polyprotein2.3e-1635.66Show/hide
Query:  LPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPFPIINDLFD
        LP   + L+ E+EL      + P +N Y + P ++  +  ++N+ L +  I+ +KA    PV+F  KK+ +LR+ +DY+ LNK    N YP P+I  L  
Subjt:  LPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPFPIINDLFD

Query:  QLDGAQYFTKLDLQSGYYQVRIAQGDGPK
        ++ G+  FTKLDL+S Y+ +R+ +GD  K
Subjt:  QLDGAQYFTKLDLQSGYYQVRIAQGDGPK

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGCATGAACTGCCAAAGACACTGCCTCTTCGACAGGAGATTCTCGATCACGAGATCGAACTTGTCCTAGGAGCCAGAACCAAGCCTCCAACAAAGAATGCTTACCG
GATGGCTCCACTTGAGTTAGCTGAGCTCAGGAAACAATTGAACGAGTTCTTAGTTGCCAAATTTATCAAACCTGCAAAAGCGCCTTATGGGACTCCTGTGCTATTTCAAA
AGAAGAAAGATGAGTCATTACGACTGTGCATAGACTACAGAGCTTTAAACAAAGTCACAGTTCGAAATAGATATCCCTTCCCGATCATAAATGATTTATTTGACCAATTG
GATGGAGCTCAGTACTTCACGAAGCTTGATCTCCAGTCAGGCTACTACCAAGTTCGGATAGCACAAGGGGATGGACCGAAGACTACATGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCCGCATGAACTGCCAAAGACACTGCCTCTTCGACAGGAGATTCTCGATCACGAGATCGAACTTGTCCTAGGAGCCAGAACCAAGCCTCCAACAAAGAATGCTTACCG
GATGGCTCCACTTGAGTTAGCTGAGCTCAGGAAACAATTGAACGAGTTCTTAGTTGCCAAATTTATCAAACCTGCAAAAGCGCCTTATGGGACTCCTGTGCTATTTCAAA
AGAAGAAAGATGAGTCATTACGACTGTGCATAGACTACAGAGCTTTAAACAAAGTCACAGTTCGAAATAGATATCCCTTCCCGATCATAAATGATTTATTTGACCAATTG
GATGGAGCTCAGTACTTCACGAAGCTTGATCTCCAGTCAGGCTACTACCAAGTTCGGATAGCACAAGGGGATGGACCGAAGACTACATGTTAA
Protein sequenceShow/hide protein sequence
MPHELPKTLPLRQEILDHEIELVLGARTKPPTKNAYRMAPLELAELRKQLNEFLVAKFIKPAKAPYGTPVLFQKKKDESLRLCIDYRALNKVTVRNRYPFPIINDLFDQL
DGAQYFTKLDLQSGYYQVRIAQGDGPKTTC