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Cmc06g0168301 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0168301
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr06:22010939..22011424
RNA-Seq ExpressionCmc06g0168301
SyntenyCmc06g0168301
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006886 - intracellular protein transport (biological process)
GO:0007033 - vacuole organization (biological process)
GO:0015074 - DNA integration (biological process)
GO:0098869 - cellular oxidant detoxification (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004601 - peroxidase activity (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032862.1 reverse transcriptase [Cucumis melo var. makuwa]3.2e-6778.88Show/hide
Query:  NHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEG-IEVDPEKIRVIKEWPVPTNVREMRGFLGL
        N VFKPYL+RFVLVFFDDILVYSQG+ EHV HLEVVLGLLKE ELY NLEKCSFAKPR GYLGHFIS++G I+VDPEKIR + EWP  TNV+E+RGFLGL
Subjt:  NHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEG-IEVDPEKIRVIKEWPVPTNVREMRGFLGL

Query:  TGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI
        TGYYRRF+KDYGT+AA LT LL TG YKWN EAE AF+KLK  MMTLP L MP F+LPFEI
Subjt:  TGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI

KAA0038753.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]4.2e-6777.02Show/hide
Query:  MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL
        MN VFKPYLRRFVLVFFDDIL+YSQG+ EHV HLEVVLGLL++ EL+VN+EKCSFAKPR  YLGHFISE+G+E DPEKIR + EWP PTNVRE+RGFLGL
Subjt:  MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL

Query:  TGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI
        TGYYRRF+K+YGT+AA LT LL  G YKW+ EAE AF KLK  MMTLP LTMP F+LPFEI
Subjt:  TGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI

KAA0042902.1 peroxidase 64 [Cucumis melo var. makuwa]8.7e-8194.41Show/hide
Query:  MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL
        MNHVFKPYLRRFV VFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPR GYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL
Subjt:  MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL

Query:  TGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI
        TGYYR FIKDYGTMAASLTLLL TGGYKWN+EAEVAFEK KMDMMTLP L MP FHLPFEI
Subjt:  TGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI

KAA0067256.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.9e-6879.5Show/hide
Query:  MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL
        MN VFKPYLRRFVLVFFDDILVYSQG+ EHV HLEVVLGLLKE ELY NLEKCSFAKPR  YLGHFISE+GIE DPEKIR + EWP PTNVRE+RGFLGL
Subjt:  MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL

Query:  TGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI
        TGYYRRF+KDYG +AA LT LL  G YKW+ EAE AF KLK  MMTLP L MP F+LPFEI
Subjt:  TGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI

XP_016900831.1 PREDICTED: uncharacterized mitochondrial protein AtMg00860-like [Cucumis melo]5.7e-88100Show/hide
Query:  MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL
        MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL
Subjt:  MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL

Query:  TGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI
        TGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI
Subjt:  TGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI

TrEMBL top hitse value%identityAlignment
A0A1S4DXX1 uncharacterized mitochondrial protein AtMg00860-like2.7e-88100Show/hide
Query:  MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL
        MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL
Subjt:  MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL

Query:  TGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI
        TGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI
Subjt:  TGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI

A0A5A7SP02 Reverse transcriptase1.6e-6778.88Show/hide
Query:  NHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEG-IEVDPEKIRVIKEWPVPTNVREMRGFLGL
        N VFKPYL+RFVLVFFDDILVYSQG+ EHV HLEVVLGLLKE ELY NLEKCSFAKPR GYLGHFIS++G I+VDPEKIR + EWP  TNV+E+RGFLGL
Subjt:  NHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEG-IEVDPEKIRVIKEWPVPTNVREMRGFLGL

Query:  TGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI
        TGYYRRF+KDYGT+AA LT LL TG YKWN EAE AF+KLK  MMTLP L MP F+LPFEI
Subjt:  TGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI

A0A5A7SS61 Ty3/gypsy retrotransposon protein2.0e-6777.02Show/hide
Query:  MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL
        MN VFKPYLRRFVLVFFDDIL+YSQG+ EHV HLEVVLGLL++ EL+VN+EKCSFAKPR  YLGHFISE+G+E DPEKIR + EWP PTNVRE+RGFLGL
Subjt:  MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL

Query:  TGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI
        TGYYRRF+K+YGT+AA LT LL  G YKW+ EAE AF KLK  MMTLP LTMP F+LPFEI
Subjt:  TGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI

A0A5A7VLC6 Ty3/gypsy retrotransposon protein1.4e-6879.5Show/hide
Query:  MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL
        MN VFKPYLRRFVLVFFDDILVYSQG+ EHV HLEVVLGLLKE ELY NLEKCSFAKPR  YLGHFISE+GIE DPEKIR + EWP PTNVRE+RGFLGL
Subjt:  MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL

Query:  TGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI
        TGYYRRF+KDYG +AA LT LL  G YKW+ EAE AF KLK  MMTLP L MP F+LPFEI
Subjt:  TGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI

A0A5D3C1Z4 Peroxidase 644.2e-8194.41Show/hide
Query:  MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL
        MNHVFKPYLRRFV VFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPR GYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL
Subjt:  MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL

Query:  TGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI
        TGYYR FIKDYGTMAASLTLLL TGGYKWN+EAEVAFEK KMDMMTLP L MP FHLPFEI
Subjt:  TGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.65.2e-2839.26Show/hide
Query:  MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL
        MN + +P L +  LV+ DDI+V+S  L EH+  L +V   L +  L + L+KC F K  T +LGH ++ +GI+ +PEKI  I+++P+PT  +E++ FLGL
Subjt:  MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL

Query:  TGYYRRFIKDYGTMAASLTLLLMTGGY--KWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI
        TGYYR+FI ++  +A  +T  L         N E + AF+KLK  +   P L +P F   F +
Subjt:  TGYYRRFIKDYGTMAASLTLLLMTGGY--KWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI

P10401 Retrovirus-related Pol polyprotein from transposon gypsy1.1e-2031.03Show/hide
Query:  MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL
        ++ V +  + +   V+ DD++++S+   +HV H++ VL  L +  + V+ EK  F K    YLG  +S++G + DPEK++ I+E+P P  V ++R FLGL
Subjt:  MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL

Query:  TGYYRRFIKDYGTMAASLTLLLMTGG------------YKWNKEAEVAFEKLKMDMMTLPA-LTMPGFHLPFEI
          YYR FIKD+  +A  +T +L                 ++N+    AF++L+  + +    L  P F  PF++
Subjt:  TGYYRRFIKDYGTMAASLTLLLMTGG------------YKWNKEAEVAFEKLKMDMMTLPA-LTMPGFHLPFEI

P20825 Retrovirus-related Pol polyprotein from transposon 2974.0e-2837.89Show/hide
Query:  MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL
        MN++ +P L +  LV+ DDI+++S  L EH++ +++V   L +  L + L+KC F K    +LGH ++ +GI+ +P K++ I  +P+PT  +E+R FLGL
Subjt:  MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL

Query:  TGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEV--AFEKLKMDMMTLPALTMPGFHLPF
        TGYYR+FI +Y  +A  +T  L        ++ E   AFEKLK  ++  P L +P F   F
Subjt:  TGYYRRFIKDYGTMAASLTLLLMTGGYKWNKEAEV--AFEKLKMDMMTLPALTMPGFHLPF

P92523 Uncharacterized mitochondrial protein AtMg008601.9e-3046.56Show/hide
Query:  VHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLG--HFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRRFIKDYGTMAASLTLLLMTGGYK
        ++HL +VL + ++++ Y N +KC+F +P+  YLG  H IS EG+  DP K+  +  WP P N  E+RGFLGLTGYYRRF+K+YG +   LT LL     K
Subjt:  VHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLG--HFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRRFIKDYGTMAASLTLLLMTGGYK

Query:  WNKEAEVAFEKLKMDMMTLPALTMPGFHLPF
        W + A +AF+ LK  + TLP L +P   LPF
Subjt:  WNKEAEVAFEKLKMDMMTLPALTMPGFHLPF

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus3.0e-2333.53Show/hide
Query:  MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL
        ++ + + ++ +   V+ DDI+V+S+    H  +L +VL  L +  L VNLEK  F   +  +LG+ ++ +GI+ DP+K+R I E P PT+V+E++ FLG+
Subjt:  MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGL

Query:  TGYYRRFIKDYGTMAASLTLLL--MTGGYKWNKEAEV----------AFEKLKMDMMTLPALTMPGFHLPFEI
        T YYR+FI+DY  +A  LT L   +    K ++ ++V          +F  LK  + +   L  P F  PF +
Subjt:  TGYYRRFIKDYGTMAASLTLLL--MTGGYKWNKEAEV----------AFEKLKMDMMTLPALTMPGFHLPFEI

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein1.4e-3146.56Show/hide
Query:  VHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLG--HFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRRFIKDYGTMAASLTLLLMTGGYK
        ++HL +VL + ++++ Y N +KC+F +P+  YLG  H IS EG+  DP K+  +  WP P N  E+RGFLGLTGYYRRF+K+YG +   LT LL     K
Subjt:  VHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLG--HFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRRFIKDYGTMAASLTLLLMTGGYK

Query:  WNKEAEVAFEKLKMDMMTLPALTMPGFHLPF
        W + A +AF+ LK  + TLP L +P   LPF
Subjt:  WNKEAEVAFEKLKMDMMTLPALTMPGFHLPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATCATGTATTCAAGCCATATTTGCGGAGGTTTGTTCTTGTATTTTTTGACGACATTTTAGTCTATAGTCAAGGGTTGATTGAACATGTGCATCACTTGGAGGTGGT
CTTAGGATTGCTGAAGGAGAATGAGTTATACGTGAACCTGGAGAAGTGCAGCTTTGCCAAGCCACGAACTGGGTACTTAGGCCACTTTATATCGGAGGAAGGCATAGAGG
TGGACCCAGAAAAGATCAGGGTTATCAAGGAATGGCCGGTACCCACCAACGTGCGGGAAATGCGTGGATTCTTGGGACTGACAGGCTACTACCGGCGGTTTATTAAAGAC
TACGGTACTATGGCCGCCTCCCTGACCCTGCTGTTAATGACGGGAGGTTACAAATGGAATAAGGAGGCAGAGGTCGCCTTTGAAAAACTGAAAATGGACATGATGACACT
CCCCGCGTTGACCATGCCTGGCTTTCACCTGCCTTTTGAGATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGAATCATGTATTCAAGCCATATTTGCGGAGGTTTGTTCTTGTATTTTTTGACGACATTTTAGTCTATAGTCAAGGGTTGATTGAACATGTGCATCACTTGGAGGTGGT
CTTAGGATTGCTGAAGGAGAATGAGTTATACGTGAACCTGGAGAAGTGCAGCTTTGCCAAGCCACGAACTGGGTACTTAGGCCACTTTATATCGGAGGAAGGCATAGAGG
TGGACCCAGAAAAGATCAGGGTTATCAAGGAATGGCCGGTACCCACCAACGTGCGGGAAATGCGTGGATTCTTGGGACTGACAGGCTACTACCGGCGGTTTATTAAAGAC
TACGGTACTATGGCCGCCTCCCTGACCCTGCTGTTAATGACGGGAGGTTACAAATGGAATAAGGAGGCAGAGGTCGCCTTTGAAAAACTGAAAATGGACATGATGACACT
CCCCGCGTTGACCATGCCTGGCTTTCACCTGCCTTTTGAGATTTAG
Protein sequenceShow/hide protein sequence
MNHVFKPYLRRFVLVFFDDILVYSQGLIEHVHHLEVVLGLLKENELYVNLEKCSFAKPRTGYLGHFISEEGIEVDPEKIRVIKEWPVPTNVREMRGFLGLTGYYRRFIKD
YGTMAASLTLLLMTGGYKWNKEAEVAFEKLKMDMMTLPALTMPGFHLPFEI