CuGenDBv2

Gene ID	Cmc06g0168761
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr06:22790852..22792009
RNA-Seq Expression	Cmc06g0168761
Synteny	Cmc06g0168761
Gene Ontology terms	GO:0006629 - lipid metabolic process (biological process) GO:0009231 - riboflavin biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0071897 - DNA biosynthetic process (biological process) GO:0016020 - membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0004491 - methylmalonate-semialdehyde dehydrogenase (acylating) activity (molecular function) GO:0004806 - triglyceride lipase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0008686 - 3,4-dihydroxy-2-butanone-4-phosphate synthase activity (molecular function)
InterPro domains	IPR025724 - GAG-pre-integrase domain

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0035949.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

8.3e-170

92.15

Show/hide

Query:  MFMRMIVANNFKSTIKNTEDAKEFMKSVEKCSQSESADKSPAGTLMSTLTNIKFDGSRTIHEHILEMTNLVARLKTMGMEVNENFLVTFILNSLPSKYDP
        MFMRM VANN KS IKNTEDAKEFMKSVEKCSQSESADKS AGTLMSTLTNIKFDGSRTIHEHILEMTNL ARLKTMGMEVNENFLV FILNSLPS+Y P
Subjt:  MFMRMIVANNFKSTIKNTEDAKEFMKSVEKCSQSESADKSPAGTLMSTLTNIKFDGSRTIHEHILEMTNLVARLKTMGMEVNENFLVTFILNSLPSKYDP

Query:  FHMNYNTLKDKWNVHELQSMLIQEEARLKKSIIHSANLMGHKGARKKPRKKNDKGNHGQLKVKQSSAPIQKKEQIKDKYRFCNKPGHYQKDCLKRKAWFE
        FHMNYNTLKDKWNVHELQSMLIQEEARLKK IIHSANLM HKG  KKP KKN KGNHGQLKVKQSSAPI KK QIKDK RFCNKPGHYQKDCLKRKAWFE
Subjt:  FHMNYNTLKDKWNVHELQSMLIQEEARLKKSIIHSANLMGHKGARKKPRKKNDKGNHGQLKVKQSSAPIQKKEQIKDKYRFCNKPGHYQKDCLKRKAWFE

Query:  NKGKHNALVYFESNLTEVPYNTWWIDSGCTIHVSNTMQGFLTTRTTNLNERFIFMGNRVKVPIEAVGTYRLTLDTGHHLDLFDTFYVPSISCNLISLSKL
        NKGKHNALV FESNLTEVPYN WWIDSGCTIHVSNTMQGFLTTRTTN NERFIFMGNRVKVP+EA+ TYRLTLDTGHHLDLFD FYVPSIS NLISLSKL
Subjt:  NKGKHNALVYFESNLTEVPYNTWWIDSGCTIHVSNTMQGFLTTRTTNLNERFIFMGNRVKVPIEAVGTYRLTLDTGHHLDLFDTFYVPSISCNLISLSKL

Query:  DTSGYYFKFGNECFSLFKQNIFIGSGILCDD
        DTSGYYFK GNECFSLFKQNIFIGSGILCDD
Subjt:  DTSGYYFKFGNECFSLFKQNIFIGSGILCDD

KAA0039623.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

9.2e-153

88.16

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Query:  MFMRMIVANNFKSTIKNTEDAKEFMKSVEKCSQSESADKSPAGTLMSTLTNIKFDGSRTIHEHILEMTNLVARLKTMGMEVNENFLVTFILNSLPSKYDP
        MFMRM VANN KSTIKNTEDAKEFMKSVEKCSQSES DKS A TLMSTLTNIKFDGSRTIHEHILEMTNL ARLKTMGMEVNENFLVTFILNSLP KY P
Subjt:  MFMRMIVANNFKSTIKNTEDAKEFMKSVEKCSQSESADKSPAGTLMSTLTNIKFDGSRTIHEHILEMTNLVARLKTMGMEVNENFLVTFILNSLPSKYDP

Query:  FHMNYNTLKDKWNVHELQSMLIQEEARLKKSIIHSANLMGHKGARKKPRKKNDKGNHGQLKVKQSSAPIQKKEQIKDKYRFCNKPGHYQKDCLKRKAWFE
        FH+NYN LKDKWNVHELQSMLIQEEARLKK IIHSANLMGHKGA KK  KKN KGNHGQLKVKQSSAPI KKEQIKDK RFCNKPGHYQKDCLKRKAWFE
Subjt:  FHMNYNTLKDKWNVHELQSMLIQEEARLKKSIIHSANLMGHKGARKKPRKKNDKGNHGQLKVKQSSAPIQKKEQIKDKYRFCNKPGHYQKDCLKRKAWFE

Query:  NKGKHNALVYFESNLTEVPYNTWWIDSGCTIHVSNTMQGFLTTRTTNLNERFIFMGNRVKVPIEAVGTYRLTLDTGHHLDLFDTFYVPSISCNLISLSKL
        NKGKHNALV FESNLTEVPYNTWWIDSGCTIHVSNTMQGFLTTRTTN NERFIFMGN VKV +EAVGTY LTLDTGHHLDLFDTFYVPS+S NLISLSKL
Subjt:  NKGKHNALVYFESNLTEVPYNTWWIDSGCTIHVSNTMQGFLTTRTTNLNERFIFMGNRVKVPIEAVGTYRLTLDTGHHLDLFDTFYVPSISCNLISLSKL

Query:  DTSGYYFKFGNECFSLFKQNI
        DTS +     N+  S F Q I
Subjt:  DTSGYYFKFGNECFSLFKQNI

KAA0061857.1 copia-like pol polyprotein [Cucumis melo var. makuwa]

3.3e-150

91.33

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Query:  MIVANNFKSTIKNTEDAKEFMKSVEKCSQSESADKSPAGTLMSTLTNIKFDGSRTIHEHILEMTNLVARLKTMGMEVNENFLVTFILNSLPSKYDPFHMN
        M +ANN KSTIKNTEDAKEFMKSVEKC QSESADKS A TLMSTLTNIKFDGSRTIHEHILEMTNL ARLKTMGMEVNENFLVTFILNSLPS+Y PFHMN
Subjt:  MIVANNFKSTIKNTEDAKEFMKSVEKCSQSESADKSPAGTLMSTLTNIKFDGSRTIHEHILEMTNLVARLKTMGMEVNENFLVTFILNSLPSKYDPFHMN

Query:  YNTLKDKWNVHELQSMLIQEEARLKKSIIHSANLMGHKGARKKPRKKNDKGNHGQLKVKQSSAPIQKKEQIKDKYRFCNKPGHYQKDCLKRKAWFENKGK
        YNTLKDKWNVHELQSMLIQEEARLKK IIHSANLMGHKGA KKP KKN KGNH QLKVKQSSAPI KK QIKDKYRFCNKPGHYQKDCLKRKAWFENKGK
Subjt:  YNTLKDKWNVHELQSMLIQEEARLKKSIIHSANLMGHKGARKKPRKKNDKGNHGQLKVKQSSAPIQKKEQIKDKYRFCNKPGHYQKDCLKRKAWFENKGK

Query:  HNALVYFESNLTEVPYNTWWIDSGCTIHVSNTMQGFLTTRTTNLNERFIFMGNRVKVPIEAVGTYRLTLDTGHHLDLFDTFYVPSISCNLISLSKLDTSG
        HNALV FESNLTEVPYNTWWIDSGC  HV N MQGFLTTRTTN NERFIFMGNRVKVP+EAVGTYRLTLDTGHHLDLF TFYVPSIS NLISLSKLDT G
Subjt:  HNALVYFESNLTEVPYNTWWIDSGCTIHVSNTMQGFLTTRTTNLNERFIFMGNRVKVPIEAVGTYRLTLDTGHHLDLFDTFYVPSISCNLISLSKLDTSG

RYE18822.1 hypothetical protein EOP45_13565, partial [Sphingobacteriaceae bacterium]

1.5e-150

75.42

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Query:  SQSESADKSPAGTLMSTLTNIKFDGSRTIHEHILEMTNLVARLKTMGMEVNENFLVTFILNSLPSKYDPFHMNYNTLKDKWNVHELQSMLIQEEARLKKS
        SQS+SADKS AG LM  LT +KFDGSRT+HEH++EM N+ ARLKTMGMEVNENFLVTFILNSLP +Y  FH++YNTLKDKW+VHELQSMLIQEEARLKKS
Subjt:  SQSESADKSPAGTLMSTLTNIKFDGSRTIHEHILEMTNLVARLKTMGMEVNENFLVTFILNSLPSKYDPFHMNYNTLKDKWNVHELQSMLIQEEARLKKS

Query:  IIHSANLMGHKGARKKPRKKNDKGNHGQLKVKQSSAPIQKKEQIKDKYRFCNKPGHYQKDCLKRKAWFENKGKHNALVYFESNLTEVPYNTWWIDSGCTI
          HSANL+GHKGARKKP  K  KG  G  K+ +SS  I KKEQ  D  RFC K GH+QKDC KRK WFE KGK +A V FESN  EVPYNTWW+DSGCT 
Subjt:  IIHSANLMGHKGARKKPRKKNDKGNHGQLKVKQSSAPIQKKEQIKDKYRFCNKPGHYQKDCLKRKAWFENKGKHNALVYFESNLTEVPYNTWWIDSGCTI

Query:  HVSNTMQGFLTTRTTNLNERFIFMGNRVKVPIEAVGTYRLTLDTGHHLDLFDTFYVPSISCNLISLSKLDTSGYYFKFGNECFSLFKQNIFIGSGILCDD
        HVSNTMQGFLTT+T + NE+FI MGNR KV +EA+GTYRL LDTGHHLDLF TFYVPS+S NL+S+SKLD +GY F FGN CFSLFKQN+F+GSGILCD 
Subjt:  HVSNTMQGFLTTRTTNLNERFIFMGNRVKVPIEAVGTYRLTLDTGHHLDLFDTFYVPSISCNLISLSKLDTSGYYFKFGNECFSLFKQNIFIGSGILCDD

Query:  LYKLKLDSVFAESLLTLHHNVGTKRGQTNESSAYLWHKRLGHISKERIKRLIKN
        LYKLKLD+ FAE+LLT+HHNVGTKRG +NESSAYLWHKRLGHISKERI+RL+KN
Subjt:  LYKLKLDSVFAESLLTLHHNVGTKRGQTNESSAYLWHKRLGHISKERIKRLIKN

TYK04469.1 copia-like pol polyprotein [Cucumis melo var. makuwa]

2.5e-150

91.64

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Query:  MIVANNFKSTIKNTEDAKEFMKSVEKCSQSESADKSPAGTLMSTLTNIKFDGSRTIHEHILEMTNLVARLKTMGMEVNENFLVTFILNSLPSKYDPFHMN
        M VANN KSTIKNTEDAKEFMKSVEKCSQSESADKS  GTLMSTLTNIKFDGSRTIHE+ILEMTNL ARL TM MEVNENFLVTFILNSLPS+Y PFHMN
Subjt:  MIVANNFKSTIKNTEDAKEFMKSVEKCSQSESADKSPAGTLMSTLTNIKFDGSRTIHEHILEMTNLVARLKTMGMEVNENFLVTFILNSLPSKYDPFHMN

Query:  YNTLKDKWNVHELQSMLIQEEARLKKSIIHSANLMGHKGARKKPRKKNDKGNHGQLKVKQSSAPIQKKEQIKDKYRFCNKPGHYQKDCLKRKAWFENKGK
        YNTLKDKWNVHELQSMLIQEEARLKK IIHS NLMGHKGA KKP KKN KGNHGQLKVKQSSAPI KK QIKDK RFCNKPGHYQKDCLKRKAWFENKGK
Subjt:  YNTLKDKWNVHELQSMLIQEEARLKKSIIHSANLMGHKGARKKPRKKNDKGNHGQLKVKQSSAPIQKKEQIKDKYRFCNKPGHYQKDCLKRKAWFENKGK

Query:  HNALVYFESNLTEVPYNTWWIDSGCTIHVSNTMQGFLTTRTTNLNERFIFMGNRVKVPIEAVGTYRLTLDTGHHLDLFDTFYVPSISCNLISLSKLDTS
        HNALV FESNLTEVPYNTWWIDSGCTIHVSNTMQGFLTTR TN NER IFMGNRVKVP+EAVGTYRLTLDTGHHLDL+DTFYVPSIS NLISLSKLDTS
Subjt:  HNALVYFESNLTEVPYNTWWIDSGCTIHVSNTMQGFLTTRTTNLNERFIFMGNRVKVPIEAVGTYRLTLDTGHHLDLFDTFYVPSISCNLISLSKLDTS

TrEMBL top hits

e value

%identity

Alignment

A0A4Q3EHL3 Uncharacterized protein (Fragment)

7.1e-151

75.42

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Query:  SQSESADKSPAGTLMSTLTNIKFDGSRTIHEHILEMTNLVARLKTMGMEVNENFLVTFILNSLPSKYDPFHMNYNTLKDKWNVHELQSMLIQEEARLKKS
        SQS+SADKS AG LM  LT +KFDGSRT+HEH++EM N+ ARLKTMGMEVNENFLVTFILNSLP +Y  FH++YNTLKDKW+VHELQSMLIQEEARLKKS
Subjt:  SQSESADKSPAGTLMSTLTNIKFDGSRTIHEHILEMTNLVARLKTMGMEVNENFLVTFILNSLPSKYDPFHMNYNTLKDKWNVHELQSMLIQEEARLKKS

Query:  IIHSANLMGHKGARKKPRKKNDKGNHGQLKVKQSSAPIQKKEQIKDKYRFCNKPGHYQKDCLKRKAWFENKGKHNALVYFESNLTEVPYNTWWIDSGCTI
          HSANL+GHKGARKKP  K  KG  G  K+ +SS  I KKEQ  D  RFC K GH+QKDC KRK WFE KGK +A V FESN  EVPYNTWW+DSGCT 
Subjt:  IIHSANLMGHKGARKKPRKKNDKGNHGQLKVKQSSAPIQKKEQIKDKYRFCNKPGHYQKDCLKRKAWFENKGKHNALVYFESNLTEVPYNTWWIDSGCTI

Query:  HVSNTMQGFLTTRTTNLNERFIFMGNRVKVPIEAVGTYRLTLDTGHHLDLFDTFYVPSISCNLISLSKLDTSGYYFKFGNECFSLFKQNIFIGSGILCDD
        HVSNTMQGFLTT+T + NE+FI MGNR KV +EA+GTYRL LDTGHHLDLF TFYVPS+S NL+S+SKLD +GY F FGN CFSLFKQN+F+GSGILCD 
Subjt:  HVSNTMQGFLTTRTTNLNERFIFMGNRVKVPIEAVGTYRLTLDTGHHLDLFDTFYVPSISCNLISLSKLDTSGYYFKFGNECFSLFKQNIFIGSGILCDD

Query:  LYKLKLDSVFAESLLTLHHNVGTKRGQTNESSAYLWHKRLGHISKERIKRLIKN
        LYKLKLD+ FAE+LLT+HHNVGTKRG +NESSAYLWHKRLGHISKERI+RL+KN
Subjt:  LYKLKLDSVFAESLLTLHHNVGTKRGQTNESSAYLWHKRLGHISKERIKRLIKN

A0A5A7T3G8 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.0e-170

92.15

Show/hide

Query:  MFMRMIVANNFKSTIKNTEDAKEFMKSVEKCSQSESADKSPAGTLMSTLTNIKFDGSRTIHEHILEMTNLVARLKTMGMEVNENFLVTFILNSLPSKYDP
        MFMRM VANN KS IKNTEDAKEFMKSVEKCSQSESADKS AGTLMSTLTNIKFDGSRTIHEHILEMTNL ARLKTMGMEVNENFLV FILNSLPS+Y P
Subjt:  MFMRMIVANNFKSTIKNTEDAKEFMKSVEKCSQSESADKSPAGTLMSTLTNIKFDGSRTIHEHILEMTNLVARLKTMGMEVNENFLVTFILNSLPSKYDP

Query:  FHMNYNTLKDKWNVHELQSMLIQEEARLKKSIIHSANLMGHKGARKKPRKKNDKGNHGQLKVKQSSAPIQKKEQIKDKYRFCNKPGHYQKDCLKRKAWFE
        FHMNYNTLKDKWNVHELQSMLIQEEARLKK IIHSANLM HKG  KKP KKN KGNHGQLKVKQSSAPI KK QIKDK RFCNKPGHYQKDCLKRKAWFE
Subjt:  FHMNYNTLKDKWNVHELQSMLIQEEARLKKSIIHSANLMGHKGARKKPRKKNDKGNHGQLKVKQSSAPIQKKEQIKDKYRFCNKPGHYQKDCLKRKAWFE

Query:  NKGKHNALVYFESNLTEVPYNTWWIDSGCTIHVSNTMQGFLTTRTTNLNERFIFMGNRVKVPIEAVGTYRLTLDTGHHLDLFDTFYVPSISCNLISLSKL
        NKGKHNALV FESNLTEVPYN WWIDSGCTIHVSNTMQGFLTTRTTN NERFIFMGNRVKVP+EA+ TYRLTLDTGHHLDLFD FYVPSIS NLISLSKL
Subjt:  NKGKHNALVYFESNLTEVPYNTWWIDSGCTIHVSNTMQGFLTTRTTNLNERFIFMGNRVKVPIEAVGTYRLTLDTGHHLDLFDTFYVPSISCNLISLSKL

Query:  DTSGYYFKFGNECFSLFKQNIFIGSGILCDD
        DTSGYYFK GNECFSLFKQNIFIGSGILCDD
Subjt:  DTSGYYFKFGNECFSLFKQNIFIGSGILCDD

A0A5A7V4M3 Copia-like pol polyprotein

1.6e-150

91.33

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Query:  MIVANNFKSTIKNTEDAKEFMKSVEKCSQSESADKSPAGTLMSTLTNIKFDGSRTIHEHILEMTNLVARLKTMGMEVNENFLVTFILNSLPSKYDPFHMN
        M +ANN KSTIKNTEDAKEFMKSVEKC QSESADKS A TLMSTLTNIKFDGSRTIHEHILEMTNL ARLKTMGMEVNENFLVTFILNSLPS+Y PFHMN
Subjt:  MIVANNFKSTIKNTEDAKEFMKSVEKCSQSESADKSPAGTLMSTLTNIKFDGSRTIHEHILEMTNLVARLKTMGMEVNENFLVTFILNSLPSKYDPFHMN

Query:  YNTLKDKWNVHELQSMLIQEEARLKKSIIHSANLMGHKGARKKPRKKNDKGNHGQLKVKQSSAPIQKKEQIKDKYRFCNKPGHYQKDCLKRKAWFENKGK
        YNTLKDKWNVHELQSMLIQEEARLKK IIHSANLMGHKGA KKP KKN KGNH QLKVKQSSAPI KK QIKDKYRFCNKPGHYQKDCLKRKAWFENKGK
Subjt:  YNTLKDKWNVHELQSMLIQEEARLKKSIIHSANLMGHKGARKKPRKKNDKGNHGQLKVKQSSAPIQKKEQIKDKYRFCNKPGHYQKDCLKRKAWFENKGK

Query:  HNALVYFESNLTEVPYNTWWIDSGCTIHVSNTMQGFLTTRTTNLNERFIFMGNRVKVPIEAVGTYRLTLDTGHHLDLFDTFYVPSISCNLISLSKLDTSG
        HNALV FESNLTEVPYNTWWIDSGC  HV N MQGFLTTRTTN NERFIFMGNRVKVP+EAVGTYRLTLDTGHHLDLF TFYVPSIS NLISLSKLDT G
Subjt:  HNALVYFESNLTEVPYNTWWIDSGCTIHVSNTMQGFLTTRTTNLNERFIFMGNRVKVPIEAVGTYRLTLDTGHHLDLFDTFYVPSISCNLISLSKLDTSG

A0A5D3BPH8 Retrovirus-related Pol polyprotein from transposon TNT 1-94

4.5e-153

88.16

Show/hide

Query:  MFMRMIVANNFKSTIKNTEDAKEFMKSVEKCSQSESADKSPAGTLMSTLTNIKFDGSRTIHEHILEMTNLVARLKTMGMEVNENFLVTFILNSLPSKYDP
        MFMRM VANN KSTIKNTEDAKEFMKSVEKCSQSES DKS A TLMSTLTNIKFDGSRTIHEHILEMTNL ARLKTMGMEVNENFLVTFILNSLP KY P
Subjt:  MFMRMIVANNFKSTIKNTEDAKEFMKSVEKCSQSESADKSPAGTLMSTLTNIKFDGSRTIHEHILEMTNLVARLKTMGMEVNENFLVTFILNSLPSKYDP

Query:  FHMNYNTLKDKWNVHELQSMLIQEEARLKKSIIHSANLMGHKGARKKPRKKNDKGNHGQLKVKQSSAPIQKKEQIKDKYRFCNKPGHYQKDCLKRKAWFE
        FH+NYN LKDKWNVHELQSMLIQEEARLKK IIHSANLMGHKGA KK  KKN KGNHGQLKVKQSSAPI KKEQIKDK RFCNKPGHYQKDCLKRKAWFE
Subjt:  FHMNYNTLKDKWNVHELQSMLIQEEARLKKSIIHSANLMGHKGARKKPRKKNDKGNHGQLKVKQSSAPIQKKEQIKDKYRFCNKPGHYQKDCLKRKAWFE

Query:  NKGKHNALVYFESNLTEVPYNTWWIDSGCTIHVSNTMQGFLTTRTTNLNERFIFMGNRVKVPIEAVGTYRLTLDTGHHLDLFDTFYVPSISCNLISLSKL
        NKGKHNALV FESNLTEVPYNTWWIDSGCTIHVSNTMQGFLTTRTTN NERFIFMGN VKV +EAVGTY LTLDTGHHLDLFDTFYVPS+S NLISLSKL
Subjt:  NKGKHNALVYFESNLTEVPYNTWWIDSGCTIHVSNTMQGFLTTRTTNLNERFIFMGNRVKVPIEAVGTYRLTLDTGHHLDLFDTFYVPSISCNLISLSKL

Query:  DTSGYYFKFGNECFSLFKQNI
        DTS +     N+  S F Q I
Subjt:  DTSGYYFKFGNECFSLFKQNI

A0A5D3C256 Copia-like pol polyprotein

1.2e-150

91.64

Show/hide

Query:  MIVANNFKSTIKNTEDAKEFMKSVEKCSQSESADKSPAGTLMSTLTNIKFDGSRTIHEHILEMTNLVARLKTMGMEVNENFLVTFILNSLPSKYDPFHMN
        M VANN KSTIKNTEDAKEFMKSVEKCSQSESADKS  GTLMSTLTNIKFDGSRTIHE+ILEMTNL ARL TM MEVNENFLVTFILNSLPS+Y PFHMN
Subjt:  MIVANNFKSTIKNTEDAKEFMKSVEKCSQSESADKSPAGTLMSTLTNIKFDGSRTIHEHILEMTNLVARLKTMGMEVNENFLVTFILNSLPSKYDPFHMN

Query:  YNTLKDKWNVHELQSMLIQEEARLKKSIIHSANLMGHKGARKKPRKKNDKGNHGQLKVKQSSAPIQKKEQIKDKYRFCNKPGHYQKDCLKRKAWFENKGK
        YNTLKDKWNVHELQSMLIQEEARLKK IIHS NLMGHKGA KKP KKN KGNHGQLKVKQSSAPI KK QIKDK RFCNKPGHYQKDCLKRKAWFENKGK
Subjt:  YNTLKDKWNVHELQSMLIQEEARLKKSIIHSANLMGHKGARKKPRKKNDKGNHGQLKVKQSSAPIQKKEQIKDKYRFCNKPGHYQKDCLKRKAWFENKGK

Query:  HNALVYFESNLTEVPYNTWWIDSGCTIHVSNTMQGFLTTRTTNLNERFIFMGNRVKVPIEAVGTYRLTLDTGHHLDLFDTFYVPSISCNLISLSKLDTS
        HNALV FESNLTEVPYNTWWIDSGCTIHVSNTMQGFLTTR TN NER IFMGNRVKVP+EAVGTYRLTLDTGHHLDL+DTFYVPSIS NLISLSKLDTS
Subjt:  HNALVYFESNLTEVPYNTWWIDSGCTIHVSNTMQGFLTTRTTNLNERFIFMGNRVKVPIEAVGTYRLTLDTGHHLDLFDTFYVPSISCNLISLSKLDTS

SwissProt top hits

e value

%identity

Alignment

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

8.1e-19

25.54

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Query:  LMSTLTNIKFDGSRTIHEHILEMTN----------LVARLKTMGMEVNENFLVTFILNSLPSKYDPFHMNYNTLKDKWNVHELQSMLIQEEARLKKSIIH
        +  TLTN  +   +    H+ E TN          L+ +L  +G+++ E      +LNSLPS YD         K    + ++ S L+  E   KK    
Subjt:  LMSTLTNIKFDGSRTIHEHILEMTN----------LVARLKTMGMEVNENFLVTFILNSLPSKYDPFHMNYNTLKDKWNVHELQSMLIQEEARLKKSIIH

Query:  SANLMGHKGARKKPRKKNDKGNHGQLKVKQSSAPIQKKEQIKDKYRFCNKPGHYQKDCLK-RKAWFENKGKHN-----ALVYFESNLT------------
           L+     R   R  N+ G  G     +  +  + K ++++ Y  CN+PGH+++DC   RK   E  G+ N     A+V    N+             
Subjt:  SANLMGHKGARKKPRKKNDKGNHGQLKVKQSSAPIQKKEQIKDKYRFCNKPGHYQKDCLK-RKAWFENKGKHN-----ALVYFESNLT------------

Query:  EVPYNTWWIDSGCTIHVSNTMQGFLTTRTTNLNERFIFMGNRVKVPIEAVGTYRLTLDTGHHLDLFDTFYVPSISCNLISLSKLDTSGYYFKFGNECFSL
          P + W +D+  + H +     F      +     + MGN     I  +G   +  + G  L L D  +VP +  NLIS   LD  GY   F N+ + L
Subjt:  EVPYNTWWIDSGCTIHVSNTMQGFLTTRTTNLNERFIFMGNRVKVPIEAVGTYRLTLDTGHHLDLFDTFYVPSISCNLISLSKLDTSGYYFKFGNECFSL

Query:  FKQNIFIGSGILCDDLYKLKLDSVFAESLLTLHHNVGTKRGQTNESSAYLWHKRLGHISKERIKRLIK
         K ++ I  G+    LY+   +              G      +E S  LWHKR+GH+S++ ++ L K
Subjt:  FKQNIFIGSGILCDDLYKLKLDSVFAESLLTLHHNVGTKRGQTNESSAYLWHKRLGHISKERIKRLIK

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTTATGCGAATGATTGTAGCAAACAATTTTAAGTCCACAATTAAGAACACTGAAGATGCTAAGGAGTTTATGAAATCTGTGGAAAAATGTTCTCAGTCAGAGTCGGC
TGACAAATCACCTGCTGGAACACTTATGAGTACTTTAACCAACATCAAGTTTGATGGTTCTCGTACTATACATGAGCATATCCTTGAAATGACGAACTTGGTAGCAAGGT
TAAAGACCATGGGAATGGAAGTTAATGAGAATTTTTTGGTAACGTTTATCCTTAATTCTTTACCTTCAAAGTATGATCCATTTCACATGAACTATAACACTCTGAAAGAT
AAATGGAATGTGCATGAATTACAAAGTATGCTCATTCAAGAGGAAGCGAGGCTTAAGAAATCAATAATTCACTCTGCCAATCTCATGGGTCACAAAGGAGCTAGAAAGAA
ACCTAGAAAAAAGAATGACAAGGGCAATCATGGACAATTAAAGGTAAAACAGTCATCTGCCCCAATCCAAAAAAAGGAACAAATTAAGGATAAGTATCGTTTTTGCAACA
AACCTGGACACTATCAGAAAGATTGTCTAAAACGTAAGGCATGGTTCGAGAATAAAGGTAAGCATAATGCTTTAGTATATTTCGAATCAAACTTAACTGAAGTTCCTTAT
AATACATGGTGGATTGATTCTGGTTGTACCATTCATGTTTCCAATACGATGCAGGGATTCCTTACGACCCGAACCACAAACCTAAATGAGAGATTCATTTTTATGGGAAA
CAGAGTCAAAGTTCCAATTGAAGCTGTGGGAACCTATCGTTTAACTTTAGATACTGGACATCATTTAGACCTTTTTGATACCTTTTATGTTCCTTCTATTTCTTGTAATT
TGATTTCCTTGTCAAAACTTGATACTTCAGGTTATTACTTTAAATTTGGGAATGAGTGTTTTAGTTTATTCAAACAGAACATTTTTATTGGTTCTGGTATTCTTTGTGAT
GACTTATATAAATTAAAGCTTGATAGTGTTTTTGCTGAGAGTTTGTTAACCTTGCATCATAATGTTGGTACTAAACGTGGTCAAACTAATGAATCGTCAGCTTACTTGTG
GCATAAACGTTTAGGTCACATATCTAAAGAAAGAATTAAAAGACTGATAAAGAATTAA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MFMRMIVANNFKSTIKNTEDAKEFMKSVEKCSQSESADKSPAGTLMSTLTNIKFDGSRTIHEHILEMTNLVARLKTMGMEVNENFLVTFILNSLPSKYDPFHMNYNTLKD
KWNVHELQSMLIQEEARLKKSIIHSANLMGHKGARKKPRKKNDKGNHGQLKVKQSSAPIQKKEQIKDKYRFCNKPGHYQKDCLKRKAWFENKGKHNALVYFESNLTEVPY
NTWWIDSGCTIHVSNTMQGFLTTRTTNLNERFIFMGNRVKVPIEAVGTYRLTLDTGHHLDLFDTFYVPSISCNLISLSKLDTSGYYFKFGNECFSLFKQNIFIGSGILCD
DLYKLKLDSVFAESLLTLHHNVGTKRGQTNESSAYLWHKRLGHISKERIKRLIKN

Cmc06g0168761 (gene) of Melon (Charmono) v1.1 genome