| GenBank top hits | e value | %identity | Alignment |
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| KAA0025945.1 gag/pol protein [Cucumis melo var. makuwa] | 2.6e-113 | 94.93 | Show/hide |
Query: KTKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHINLDRIGRLVKN
K KRNLVSVSCLIEHMYSINFSMNEAFI KNGVHICSAKLEN+LYVLRPNEAKAVLNHEM RTANTQNKRQRISPNNNTYLWHLRL HINLDRIGRLVKN
Subjt: KTKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHINLDRIGRLVKN
Query: GLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVENLLSKK
GLLNKL+D SLPPCESCLEGKMTKRPFTGKGYRAKEPL+LIHSDLCGPMNVKARG FEYFISFIDDYSRYGYLYLMEHKS+ALEKFKEYK EVENLLSKK
Subjt: GLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVENLLSKK
Query: IKILRSDRGGEYMDLRF
IKILRSDRGGEYMDLRF
Subjt: IKILRSDRGGEYMDLRF
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| KAA0035907.1 gag/pol protein [Cucumis melo var. makuwa] | 1.9e-111 | 93.55 | Show/hide |
Query: KTKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHINLDRIGRLVKN
K KRNLVSVSCLIEHMYSINFSMNEAFI KNGVHICSAKLEN+LYVLRPNEAKAVLNHEM RTANTQNKRQRISPNNNTYLWHLRL HINLDRIGRLVK+
Subjt: KTKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHINLDRIGRLVKN
Query: GLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVENLLSKK
GLLNKL+D SLPPCESCLEGKMTKRPFTGKGYRAKEPL+LIHSDLCGPMNVKARG FEYFISFIDDYSRYGYLYLMEHKS+ALEKFKEYK EVENLLSKK
Subjt: GLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVENLLSKK
Query: IKILRSDRGGEYMDLRF
IKI RSDRGGEYMDL F
Subjt: IKILRSDRGGEYMDLRF
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| KAA0037509.1 gag/pol protein [Cucumis melo var. makuwa] | 1.8e-90 | 93.33 | Show/hide |
Query: AKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHINLDRIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEP
AKLEN+LYVLRPNEAKAVLNHEM RT NTQNKRQRISPNNNTYLWHLRL HINLDRI RLVKNGLLN+LE+DSLPPCESCLEGKMTKRPFTGKGYRAKEP
Subjt: AKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHINLDRIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEP
Query: LKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDLRF
L+LIHSDLCG MNVKAR DFEYFISFIDDY RYGYLYLMEHKSKALEKFK+YKAEVENLLSKKIKILRSDRGGEYMDLRF
Subjt: LKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDLRF
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| KAA0060534.1 gag/pol protein [Cucumis melo var. makuwa] | 4.6e-110 | 92.17 | Show/hide |
Query: KTKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHINLDRIGRLVKN
K KRNLVSVSCLIEHMYSI+FSMNEAFISKNGVHICS KLE++LYVL+PNE KAVLNHEM RTANTQNKRQRIS NNNTYLWHLRL HINLDRIGRLVKN
Subjt: KTKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHINLDRIGRLVKN
Query: GLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVENLLSKK
GLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPL+LIHSDLCGPMNVKA G FEYFISFIDDYS YGYLYL+EHKS+ALEKFKEYK EVENLLSKK
Subjt: GLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVENLLSKK
Query: IKILRSDRGGEYMDLRF
IKILRSDRGGEYMDLRF
Subjt: IKILRSDRGGEYMDLRF
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| KAA0067938.1 gag/pol protein [Cucumis melo var. makuwa] | 4.7e-107 | 91.71 | Show/hide |
Query: KTKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHINLDRIGRLVKN
K KRNLV VSCLIEHMYSINFSMNEAFISKNG AKLE++LYVLRPNEAKAVLNHEM RTANTQNKRQRISPNNNTYLWHLRL HINLDRIGRLVKN
Subjt: KTKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHINLDRIGRLVKN
Query: GLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVENLLSKK
GLLNKL+DDSLPPCESCLEGKMTKRPFTGK YRAKEPL+LIHSDLCGPMNVKARG FEYFISFIDDYSRYGYLYLMEHK +ALEKFKEYK EVENLLSKK
Subjt: GLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVENLLSKK
Query: IKILRSDRGGEYMDLRF
IKILRSDRGGEYMDLRF
Subjt: IKILRSDRGGEYMDLRF
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| TrEMBL top hits | e value | %identity | Alignment |
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| A0A5A7T2V9 Gag/pol protein | 9.0e-112 | 93.55 | Show/hide |
Query: KTKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHINLDRIGRLVKN
K KRNLVSVSCLIEHMYSINFSMNEAFI KNGVHICSAKLEN+LYVLRPNEAKAVLNHEM RTANTQNKRQRISPNNNTYLWHLRL HINLDRIGRLVK+
Subjt: KTKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHINLDRIGRLVKN
Query: GLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVENLLSKK
GLLNKL+D SLPPCESCLEGKMTKRPFTGKGYRAKEPL+LIHSDLCGPMNVKARG FEYFISFIDDYSRYGYLYLMEHKS+ALEKFKEYK EVENLLSKK
Subjt: GLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVENLLSKK
Query: IKILRSDRGGEYMDLRF
IKI RSDRGGEYMDL F
Subjt: IKILRSDRGGEYMDLRF
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| A0A5A7T820 Gag/pol protein | 8.7e-91 | 93.33 | Show/hide |
Query: AKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHINLDRIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEP
AKLEN+LYVLRPNEAKAVLNHEM RT NTQNKRQRISPNNNTYLWHLRL HINLDRI RLVKNGLLN+LE+DSLPPCESCLEGKMTKRPFTGKGYRAKEP
Subjt: AKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHINLDRIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEP
Query: LKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDLRF
L+LIHSDLCG MNVKAR DFEYFISFIDDY RYGYLYLMEHKSKALEKFK+YKAEVENLLSKKIKILRSDRGGEYMDLRF
Subjt: LKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDLRF
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| A0A5A7TZD0 Gag/pol protein | 1.3e-113 | 94.93 | Show/hide |
Query: KTKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHINLDRIGRLVKN
K KRNLVSVSCLIEHMYSINFSMNEAFI KNGVHICSAKLEN+LYVLRPNEAKAVLNHEM RTANTQNKRQRISPNNNTYLWHLRL HINLDRIGRLVKN
Subjt: KTKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHINLDRIGRLVKN
Query: GLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVENLLSKK
GLLNKL+D SLPPCESCLEGKMTKRPFTGKGYRAKEPL+LIHSDLCGPMNVKARG FEYFISFIDDYSRYGYLYLMEHKS+ALEKFKEYK EVENLLSKK
Subjt: GLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVENLLSKK
Query: IKILRSDRGGEYMDLRF
IKILRSDRGGEYMDLRF
Subjt: IKILRSDRGGEYMDLRF
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| A0A5A7VJG3 Gag/pol protein | 2.3e-107 | 91.71 | Show/hide |
Query: KTKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHINLDRIGRLVKN
K KRNLV VSCLIEHMYSINFSMNEAFISKNG AKLE++LYVLRPNEAKAVLNHEM RTANTQNKRQRISPNNNTYLWHLRL HINLDRIGRLVKN
Subjt: KTKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHINLDRIGRLVKN
Query: GLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVENLLSKK
GLLNKL+DDSLPPCESCLEGKMTKRPFTGK YRAKEPL+LIHSDLCGPMNVKARG FEYFISFIDDYSRYGYLYLMEHK +ALEKFKEYK EVENLLSKK
Subjt: GLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVENLLSKK
Query: IKILRSDRGGEYMDLRF
IKILRSDRGGEYMDLRF
Subjt: IKILRSDRGGEYMDLRF
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| A0A5D3BNE1 Gag/pol protein | 2.2e-110 | 92.17 | Show/hide |
Query: KTKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHINLDRIGRLVKN
K KRNLVSVSCLIEHMYSI+FSMNEAFISKNGVHICS KLE++LYVL+PNE KAVLNHEM RTANTQNKRQRIS NNNTYLWHLRL HINLDRIGRLVKN
Subjt: KTKRNLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHINLDRIGRLVKN
Query: GLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVENLLSKK
GLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPL+LIHSDLCGPMNVKA G FEYFISFIDDYS YGYLYL+EHKS+ALEKFKEYK EVENLLSKK
Subjt: GLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVENLLSKK
Query: IKILRSDRGGEYMDLRF
IKILRSDRGGEYMDLRF
Subjt: IKILRSDRGGEYMDLRF
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 3.3e-18 | 32.88 | Show/hide |
Query: NLVSVSCLIEHMYSINFSMNEAFISKNGVHIC--SAKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHIN------LDRIGR
NL+SV L E SI F + ISKNG+ + S L N V+N + + + N ++K NN LWH R HI+ + R
Subjt: NLVSVSCLIEHMYSINFSMNEAFISKNGVHIC--SAKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHIN------LDRIGR
Query: LVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRA--KEPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVE
LLN LE S CE CL GK + PF + K PL ++HSD+CGP+ D YF+ F+D ++ Y YL+++KS F+++ A+ E
Subjt: LVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRA--KEPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVE
Query: NLLSKKIKILRSDRGGEYM
+ K+ L D G EY+
Subjt: NLLSKKIKILRSDRGGEYM
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 4.9e-22 | 36.5 | Show/hide |
Query: LWHLRLSHINLDRIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKS
LWH R+ H++ + L K L++ + ++ PC+ CL GK + F R L L++SD+CGPM +++ G +YF++FIDD SR ++Y+++ K
Subjt: LWHLRLSHINLDRIGRLVKNGLLNKLEDDSLPPCESCLEGKMTKRPFTGKGYRAKEPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKS
Query: KALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDLRF
+ + F+++ A VE +K+K LRSD GGEY F
Subjt: KALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDLRF
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| Q12491 Transposon Ty2-B Gag-Pol polyprotein | 3.3e-10 | 26.91 | Show/hide |
Query: NLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTY-LWHLRLSHINLDRIGRLVKNGLL
+L+S+S L + F+ N +G + D Y L ++ + +H T N NK + S N Y L H L H N I + +K +
Subjt: NLVSVSCLIEHMYSINFSMNEAFISKNGVHICSAKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTY-LWHLRLSHINLDRIGRLVKNGLL
Query: NKLEDDSLP-------PCESCLEGKMTKRPFTGKGYRAK-----EPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLM--EHKSKALEKFKEY
L++ + C CL GK TK KG R K EP + +H+D+ GP++ + YFISF D+ +R+ ++Y + + L F
Subjt: NKLEDDSLP-------PCESCLEGKMTKRPFTGKGYRAK-----EPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLM--EHKSKALEKFKEY
Query: KAEVENLLSKKIKILRSDRGGEY
A ++N + ++ +++ DRG EY
Subjt: KAEVENLLSKKIKILRSDRGGEY
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 2.1e-12 | 27.57 | Show/hide |
Query: GVHICSAKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHINLDRIGRLVKNGLLNKLE-DDSLPPCESCLEGKMTKRPFTGK
GV + K +++LY E + +S A+ +K S WH RL H + ++ N L+ L C CL K K PF+
Subjt: GVHICSAKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHINLDRIGRLVKNGLLNKLE-DDSLPPCESCLEGKMTKRPFTGK
Query: GYRAKEPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDL
+ PL+ I+SD+ + + ++ Y++ F+D ++RY +LY ++ KS+ E F +K +EN +I SD GGE++ L
Subjt: GYRAKEPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDL
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.4e-13 | 29.03 | Show/hide |
Query: GVHICSAKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHINLDRIGRLVKNGLLNKLE-DDSLPPCESCLEGKMTKRPFTGK
GV + K +++LY E + +S A+ +K S WH RL H +L + ++ N L L L C C K K PF+
Subjt: GVHICSAKLENDLYVLRPNEAKAVLNHEMSRTANTQNKRQRISPNNNTYLWHLRLSHINLDRIGRLVKNGLLNKLE-DDSLPPCESCLEGKMTKRPFTGK
Query: GYRAKEPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDLR
+ +PL+ I+SD+ + + ++ Y++ F+D ++RY +LY ++ KS+ + F +K+ VEN +I L SD GGE++ LR
Subjt: GYRAKEPLKLIHSDLCGPMNVKARGDFEYFISFIDDYSRYGYLYLMEHKSKALEKFKEYKAEVENLLSKKIKILRSDRGGEYMDLR
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