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Cmc06g0169711 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0169711
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description1-deoxy-D-xylulose-5-phosphate synthase
Genome locationCMiso1.1chr06:24295590..24296154
RNA-Seq ExpressionCmc06g0169711
SyntenyCmc06g0169711
Gene Ontology termsGO:0009228 - thiamine biosynthetic process (biological process)
GO:0016114 - terpenoid biosynthetic process (biological process)
GO:0052865 - 1-deoxy-D-xylulose 5-phosphate biosynthetic process (biological process)
GO:0016020 - membrane (cellular component)
GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR005477 - Deoxyxylulose-5-phosphate synthase
IPR029061 - Thiamin diphosphate-binding fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060418.1 putative 1-deoxy-D-xylulose-5-phosphate synthase 2 [Cucumis melo var. makuwa]9.3e-5299.07Show/hide
Query:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST
        +DVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST
Subjt:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST

Query:  SISAALG
        SISAALG
Subjt:  SISAALG

THG08449.1 hypothetical protein TEA_023512 [Camellia sinensis var. sinensis]1.1e-4176.64Show/hide
Query:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST
        QD+E+LAAE+R ++V+SVSK+GGHL ++LG VELTVALH+VFD PQDK++WDVGHQAY HKILTGRRSRM T+RK  GL+GFP+RDESIYD FGAGHSST
Subjt:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST

Query:  SISAALG
        SISA LG
Subjt:  SISAALG

XP_008450191.1 PREDICTED: probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Cucumis melo]3.2e-52100Show/hide
Query:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST
        QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST
Subjt:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST

Query:  SISAALG
        SISAALG
Subjt:  SISAALG

XP_022136898.1 probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Momordica charantia]8.4e-4583.18Show/hide
Query:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST
        Q+VEE+A EIREE+VYSVSKSGGHLGSNLGTVELT+ALHYVF+APQDK++WDVGHQAY HKI+TGRRSRM T+RK GGLSGFP R+ES+YD FGAGHSST
Subjt:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST

Query:  SISAALG
        +ISAALG
Subjt:  SISAALG

XP_028082523.1 probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic [Camellia sinensis]1.1e-4176.64Show/hide
Query:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST
        QD+E+LAAE+R ++V+SVSK+GGHL ++LG VELTVALH+VFD PQDK++WDVGHQAY HKILTGRRSRM T+RK  GL+GFP+RDESIYD FGAGHSST
Subjt:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST

Query:  SISAALG
        SISA LG
Subjt:  SISAALG

TrEMBL top hitse value%identityAlignment
A0A1S3BPP1 1-deoxy-D-xylulose-5-phosphate synthase1.5e-52100Show/hide
Query:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST
        QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST
Subjt:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST

Query:  SISAALG
        SISAALG
Subjt:  SISAALG

A0A4S4DYC8 1-deoxy-D-xylulose-5-phosphate synthase5.5e-4276.64Show/hide
Query:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST
        QD+E+LAAE+R ++V+SVSK+GGHL ++LG VELTVALH+VFD PQDK++WDVGHQAY HKILTGRRSRM T+RK  GL+GFP+RDESIYD FGAGHSST
Subjt:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST

Query:  SISAALG
        SISA LG
Subjt:  SISAALG

A0A5D3CHA1 1-deoxy-D-xylulose-5-phosphate synthase4.5e-5299.07Show/hide
Query:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST
        +DVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST
Subjt:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST

Query:  SISAALG
        SISAALG
Subjt:  SISAALG

A0A6J1C8S7 1-deoxy-D-xylulose-5-phosphate synthase4.1e-4583.18Show/hide
Query:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST
        Q+VEE+A EIREE+VYSVSKSGGHLGSNLGTVELT+ALHYVF+APQDK++WDVGHQAY HKI+TGRRSRM T+RK GGLSGFP R+ES+YD FGAGHSST
Subjt:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST

Query:  SISAALG
        +ISAALG
Subjt:  SISAALG

A0A6P5ZHN7 1-deoxy-D-xylulose-5-phosphate synthase9.4e-4275.7Show/hide
Query:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST
        +++E+LAAEIR ++V++VSK+GGHL S+LG VELT+ALHYVFDAP+DKI+WDVGHQAY HKILTGRRSRM T+RK  GL+GFP+RDES+YD FGAGHSST
Subjt:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST

Query:  SISAALG
        SISA LG
Subjt:  SISAALG

SwissProt top hitse value%identityAlignment
A1TNR1 1-deoxy-D-xylulose-5-phosphate synthase4.2e-3975.24Show/hide
Query:  VEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSSTSI
        ++ELAAE+R  V+ SVSK+GGHL SNLGTVELTVALH VFD P+D++VWDVGHQ Y HKILTGRR RM T+R+ GGLSGFP+R ES YDTFG  HSSTSI
Subjt:  VEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSSTSI

Query:  SAALG
        SAALG
Subjt:  SAALG

A2SJ46 1-deoxy-D-xylulose-5-phosphate synthase2.5e-3970.75Show/hide
Query:  DVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSSTS
        ++++LA E+R+ V+ SVS++GGHL SNLGTVELT+ALH+VF+ PQD++VWDVGHQ Y HKILTGRR RM  +R+ GG+SGFPRRDES YDTFG  HSSTS
Subjt:  DVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSSTS

Query:  ISAALG
        ISAALG
Subjt:  ISAALG

B1Y2X5 1-deoxy-D-xylulose-5-phosphate synthase5.9e-4174.53Show/hide
Query:  DVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSSTS
        ++++LA E+RE V+ SVS++GGHL SNLGTVELTVALH+VFD P+D++VWDVGHQ Y HKILTGRR RM T+R+ GGLSGFPRRDES YDTFG  HSSTS
Subjt:  DVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSSTS

Query:  ISAALG
        ISAALG
Subjt:  ISAALG

Q1LK34 1-deoxy-D-xylulose-5-phosphate synthase4.2e-3971.03Show/hide
Query:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST
        + ++ LA E+R  V+ SVS++GGHL SNLGTVELT+ALHYVFD P D++VWDVGHQ+Y HKILTGRR RM T+R+ GG+SGFPRR ES YDTFG  HSST
Subjt:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST

Query:  SISAALG
        SISAALG
Subjt:  SISAALG

Q6YU51 Probable 1-deoxy-D-xylulose-5-phosphate synthase 2, chloroplastic5.9e-4166.94Show/hide
Query:  DVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSSTS
        ++E+LAAE+R E+V++VSK+GGHL S+LG VEL VALH+VFD P+DKI+WDVGHQAY HKILTGRRSRM T+R+  GL+GFP+RDES +D FGAGHSSTS
Subjt:  DVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSSTS

Query:  ISAALGTFFF--FLIKKAYILVVI
        ISAALG       L KK +++ VI
Subjt:  ISAALGTFFF--FLIKKAYILVVI

Arabidopsis top hitse value%identityAlignment
AT3G21500.1 1-deoxy-D-xylulose 5-phosphate synthase 11.1e-3762.62Show/hide
Query:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST
        ++++ L+ E+R +V+++VSK+GGHLGSNLG VELTVALHY+F+ P DKI+WDVGHQ+Y HKILTGRR +M+T+R+  GLSG+ +R ES +D+FG GHSST
Subjt:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST

Query:  SISAALG
        ++SA LG
Subjt:  SISAALG

AT3G21500.2 1-deoxy-D-xylulose 5-phosphate synthase 11.1e-3762.62Show/hide
Query:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST
        ++++ L+ E+R +V+++VSK+GGHLGSNLG VELTVALHY+F+ P DKI+WDVGHQ+Y HKILTGRR +M+T+R+  GLSG+ +R ES +D+FG GHSST
Subjt:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST

Query:  SISAALG
        ++SA LG
Subjt:  SISAALG

AT4G15560.1 Deoxyxylulose-5-phosphate synthase3.6e-3864.49Show/hide
Query:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST
        +++++L+ E+R +V+++VSK+GGHLGS+LG VELTVALHY+F+ PQDKI+WDVGHQ+Y HKILTGRR +M T+R+  GLSGF +R ES +D FG GHSST
Subjt:  QDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST

Query:  SISAALG
        +ISA LG
Subjt:  SISAALG

AT5G11380.1 1-deoxy-D-xylulose 5-phosphate synthase 31.1e-1847.71Show/hide
Query:  QDVEELAAEIREEVVYSV--SKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHS
        ++++ LA EIR E ++SV   K+   +  +   +ELT+ALHYVF AP D I+WD   Q YAHK+LT R S + + R+  G+SG   R ES YD+FG GH 
Subjt:  QDVEELAAEIREEVVYSV--SKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHS

Query:  STSISAALG
          SISA LG
Subjt:  STSISAALG

AT5G11380.2 1-deoxy-D-xylulose 5-phosphate synthase 31.1e-1847.71Show/hide
Query:  QDVEELAAEIREEVVYSV--SKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHS
        ++++ LA EIR E ++SV   K+   +  +   +ELT+ALHYVF AP D I+WD   Q YAHK+LT R S + + R+  G+SG   R ES YD+FG GH 
Subjt:  QDVEELAAEIREEVVYSV--SKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHS

Query:  STSISAALG
          SISA LG
Subjt:  STSISAALG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATATTTTTTCTTTTTTGGTGAGATTTCAGGATGTTGAAGAACTTGCAGCAGAAATTAGAGAAGAAGTTGTGTATTCAGTTTCGAAATCAGGTGGCCATTTAGGTTC
AAACTTAGGCACTGTTGAGCTGACTGTGGCATTGCATTACGTCTTCGATGCACCTCAAGACAAGATCGTATGGGACGTCGGCCATCAGGCTTATGCACATAAGATTCTTA
CGGGGAGGAGGAGTAGAATGCAAACAGTAAGGAAGGCTGGGGGACTCTCCGGATTTCCAAGAAGGGATGAAAGTATTTATGATACTTTTGGTGCTGGCCACAGCTCTACA
AGCATTTCAGCTGCTCTTGGTACTTTTTTTTTTTTTTTAATAAAGAAGGCCTATATATTAGTAGTTATTTCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTATATTTTTTCTTTTTTGGTGAGATTTCAGGATGTTGAAGAACTTGCAGCAGAAATTAGAGAAGAAGTTGTGTATTCAGTTTCGAAATCAGGTGGCCATTTAGGTTC
AAACTTAGGCACTGTTGAGCTGACTGTGGCATTGCATTACGTCTTCGATGCACCTCAAGACAAGATCGTATGGGACGTCGGCCATCAGGCTTATGCACATAAGATTCTTA
CGGGGAGGAGGAGTAGAATGCAAACAGTAAGGAAGGCTGGGGGACTCTCCGGATTTCCAAGAAGGGATGAAAGTATTTATGATACTTTTGGTGCTGGCCACAGCTCTACA
AGCATTTCAGCTGCTCTTGGTACTTTTTTTTTTTTTTTAATAAAGAAGGCCTATATATTAGTAGTTATTTCTTAA
Protein sequenceShow/hide protein sequence
MYIFSFLVRFQDVEELAAEIREEVVYSVSKSGGHLGSNLGTVELTVALHYVFDAPQDKIVWDVGHQAYAHKILTGRRSRMQTVRKAGGLSGFPRRDESIYDTFGAGHSST
SISAALGTFFFFLIKKAYILVVIS