CuGenDBv2

Gene ID	Cmc06g0169741
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ribonuclease H
Genome location	CMiso1.1chr06:24317116..24317781
RNA-Seq Expression	Cmc06g0169741
Synteny	Cmc06g0169741
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006310 - DNA recombination (biological process) GO:0015074 - DNA integration (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0005634 - nucleus (cellular component) GO:0030430 - host cell cytoplasm (cellular component) GO:0003723 - RNA binding (molecular function) GO:0003887 - DNA-directed DNA polymerase activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0036957.1 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa]

9.4e-118

95.93

Show/hide

Query:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM
        MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSK DEDHTTTLQKLFD LRKYQLKLNPSKCTFGAT GKLLGFIVS+E IKVDPDKVRAIMEM
Subjt:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM

Query:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE
        PSPKTEKEIRGFLGRLNYISRFIS+LTPTCEPIFK LRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLES M GVLGQHDLSGKKE
Subjt:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE

Query:  HAIYYLSKKFTDYESRYSMLE
        HAIYYLSKKFTDYESRYSMLE
Subjt:  HAIYYLSKKFTDYESRYSMLE

KAA0037621.1 uncharacterized protein E6C27_scaffold277G002820 [Cucumis melo var. makuwa]

1.0e-116

94.57

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Query:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM
        MPFGLKN GATYQR MVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFD LRKYQLKLNPSKC FGATSGKLLGFIVS+E IKVDPDKVRAIMEM
Subjt:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM

Query:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE
        PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFK L KNNPGKWNEDCEEAFNKIKQYLQSPPVL+PPAPGRPLILYLTVLESSMGGVLGQHDLSGKK+
Subjt:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE

Query:  HAIYYLSKKFTDYESRYSMLE
        H IYYLSKKFT+YESRYSMLE
Subjt:  HAIYYLSKKFTDYESRYSMLE

KAA0037783.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]

4.2e-118

95.93

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Query:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM
        MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSK DEDHTTTLQKLFD LRKYQLKLNPSKCTFGATSGKLLGFIVS+EEIKVDP+KVRAIMEM
Subjt:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM

Query:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE
        PSPKTEKEIRGFLGRLNYISRFISHLTPTC+PIFK LRKNNP KWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLS KKE
Subjt:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE

Query:  HAIYYLSKKFTDYESRYSMLE
        HAIYYLSKKFTDYESRYS+LE
Subjt:  HAIYYLSKKFTDYESRYSMLE

TYK24459.1 uncharacterized protein E5676_scaffold717G00160 [Cucumis melo var. makuwa]

2.9e-119

96.83

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Query:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM
        MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSK DEDHTTTLQKLFD LRKYQLKLNPSKCTFGAT GKLLGFIVS+E IKVDPDKVRAIMEM
Subjt:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM

Query:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE
        PSPKTEKEIRGFLGRLNYISRFIS+LTPTCEPIFK LRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE
Subjt:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE

Query:  HAIYYLSKKFTDYESRYSMLE
        HAIYYLSKKFTDYESRYSMLE
Subjt:  HAIYYLSKKFTDYESRYSMLE

TYK27306.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]

4.2e-118

95.93

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Query:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM
        MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSK DEDHTTTLQKLFD LRKYQLKLNPSKCTFGATSGKLLGFIVS+EEIKVDP+KVRAIMEM
Subjt:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM

Query:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE
        PSPKTEKEIRGFLGRLNYISRFISHLTPTC+PIFK LRKNNP KWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLS KKE
Subjt:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE

Query:  HAIYYLSKKFTDYESRYSMLE
        HAIYYLSKKFTDYESRYS+LE
Subjt:  HAIYYLSKKFTDYESRYSMLE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T474 Retrovirus-related Pol polyprotein from transposon 17.6

2.0e-118

95.93

Show/hide

Query:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM
        MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSK DEDHTTTLQKLFD LRKYQLKLNPSKCTFGATSGKLLGFIVS+EEIKVDP+KVRAIMEM
Subjt:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM

Query:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE
        PSPKTEKEIRGFLGRLNYISRFISHLTPTC+PIFK LRKNNP KWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLS KKE
Subjt:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE

Query:  HAIYYLSKKFTDYESRYSMLE
        HAIYYLSKKFTDYESRYS+LE
Subjt:  HAIYYLSKKFTDYESRYSMLE

A0A5A7T5W6 RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein

4.6e-118

95.93

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Query:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM
        MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSK DEDHTTTLQKLFD LRKYQLKLNPSKCTFGAT GKLLGFIVS+E IKVDPDKVRAIMEM
Subjt:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM

Query:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE
        PSPKTEKEIRGFLGRLNYISRFIS+LTPTCEPIFK LRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLES M GVLGQHDLSGKKE
Subjt:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE

Query:  HAIYYLSKKFTDYESRYSMLE
        HAIYYLSKKFTDYESRYSMLE
Subjt:  HAIYYLSKKFTDYESRYSMLE

A0A5A7T7R4 Ribonuclease H

5.0e-117

94.57

Show/hide

Query:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM
        MPFGLKN GATYQR MVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFD LRKYQLKLNPSKC FGATSGKLLGFIVS+E IKVDPDKVRAIMEM
Subjt:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM

Query:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE
        PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFK L KNNPGKWNEDCEEAFNKIKQYLQSPPVL+PPAPGRPLILYLTVLESSMGGVLGQHDLSGKK+
Subjt:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE

Query:  HAIYYLSKKFTDYESRYSMLE
        H IYYLSKKFT+YESRYSMLE
Subjt:  HAIYYLSKKFTDYESRYSMLE

A0A5D3DMD2 Ribonuclease H

1.4e-119

96.83

Show/hide

Query:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM
        MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSK DEDHTTTLQKLFD LRKYQLKLNPSKCTFGAT GKLLGFIVS+E IKVDPDKVRAIMEM
Subjt:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM

Query:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE
        PSPKTEKEIRGFLGRLNYISRFIS+LTPTCEPIFK LRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE
Subjt:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE

Query:  HAIYYLSKKFTDYESRYSMLE
        HAIYYLSKKFTDYESRYSMLE
Subjt:  HAIYYLSKKFTDYESRYSMLE

A0A5D3DUB3 Retrovirus-related Pol polyprotein from transposon 17.6

2.0e-118

95.93

Show/hide

Query:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM
        MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSK DEDHTTTLQKLFD LRKYQLKLNPSKCTFGATSGKLLGFIVS+EEIKVDP+KVRAIMEM
Subjt:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM

Query:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE
        PSPKTEKEIRGFLGRLNYISRFISHLTPTC+PIFK LRKNNP KWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLS KKE
Subjt:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE

Query:  HAIYYLSKKFTDYESRYSMLE
        HAIYYLSKKFTDYESRYS+LE
Subjt:  HAIYYLSKKFTDYESRYSMLE

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

5.9e-30

33.78

Show/hide

Query:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM
        MPFGLKNA AT+QR M  +   +++K   VY+DD+I  S   ++H  +L  +F+ L K  LKL   KC F       LG +++ + IK +P+K+ AI + 
Subjt:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM

Query:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKN-NPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKK
        P P   KEI+ FLG   Y  +FI +     +P+ K L+KN      N + + AF K+K  +   P+L  P   +   L     + ++G VL Q       
Subjt:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKN-NPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKK

Query:  EHAIYYLSKKFTDYESRYSMLE
         H + Y+S+   ++E  YS +E
Subjt:  EHAIYYLSKKFTDYESRYSMLE

P20825 Retrovirus-related Pol polyprotein from transposon 297

2.5e-28

34.23

Show/hide

Query:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM
        MPFGL+NA AT+QR M  +   +++K   VY+DD+I  S    +H  ++Q +F  L    LKL   KC F       LG IV+ + IK +P KV+AI+  
Subjt:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM

Query:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNE-DCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKK
        P P  +KEIR FLG   Y  +FI +     +P+   L+K       + +  EAF K+K  +   P+L  P   +  +L       ++G VL Q+      
Subjt:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNE-DCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKK

Query:  EHAIYYLSKKFTDYESRYSMLE
         H I ++S+   D+E  YS +E
Subjt:  EHAIYYLSKKFTDYESRYSMLE

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

4.8e-24

30.88

Show/hide

Query:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM
        MPFGL NA +T+ R M   F D+  + + VY+DD++  S+  E+H   L  + + L+   L +   KC F +   + LG+ +  ++I     K  AI + 
Subjt:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM

Query:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE
        P+PKT K+ + FLG +NY  RFI + +   +PI  F+   +  +W E  ++A  K+K  L + PVL+P        L     +  +G VL + D   K  
Subjt:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE

Query:  HAIYYLSKKFTDYESRY
          + Y SK     +  Y
Subjt:  HAIYYLSKKFTDYESRY

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

6.7e-26

32.33

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Query:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM
        +PFGLKNA A +QR +  +  + + K   VY+DD+I  S+  + H   L+ +   L K  L++N  K  F  T  + LG+IV+ + IK DP KVRAI EM
Subjt:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM

Query:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLR-----------KNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGV
        P P + KE++ FLG  +Y  +FI       +P+    R              P   +E   ++FN +K  L S  +L  P   +P  L       ++G V
Subjt:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLR-----------KNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGV

Query:  LGQHDLSGKKEHAIYYLSKKFTDYESRYSMLE
        L Q D    ++  I Y+S+     E  Y+ +E
Subjt:  LGQHDLSGKKEHAIYYLSKKFTDYESRYSMLE

Q99315 Transposon Ty3-G Gag-Pol polyprotein

2.8e-24

30.88

Show/hide

Query:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM
        MPFGL NA +T+ R M   F D+  + + VY+DD++  S+  E+H   L  + + L+   L +   KC F +   + LG+ +  ++I     K  AI + 
Subjt:  MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEM

Query:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE
        P+PKT K+ + FLG +NY  RFI + +   +PI  F+   +  +W E  ++A +K+K  L + PVL+P        L     +  +G VL + D   K  
Subjt:  PSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKE

Query:  HAIYYLSKKFTDYESRY
          + Y SK     +  Y
Subjt:  HAIYYLSKKFTDYESRY

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

1.3e-13

33.08

Show/hide

Query:  LQKLFDLLRKYQLKLNPSKCTFGATSGKLLG--FIVSKEEIKVDPDKVRAIMEMPSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWN
        L  +  +  ++Q   N  KC FG      LG   I+S E +  DP K+ A++  P PK   E+RGFLG   Y  RF+ +      P+ + L+KN+  KW 
Subjt:  LQKLFDLLRKYQLKLNPSKCTFGATSGKLLG--FIVSKEEIKVDPDKVRAIMEMPSPKTEKEIRGFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWN

Query:  EDCEEAFNKIKQYLQSPPVLIPPAPGRPLI
        E    AF  +K  + + PVL  P    P +
Subjt:  EDCEEAFNKIKQYLQSPPVLIPPAPGRPLI

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCTTTTGGTTTGAAAAATGCTGGGGCAACCTATCAGCGAGCAATGGTTACACTTTTTCATGATATGATGCATAAAGAAATAGAGGTGTATGTTGATGATATGATCGC
AAAATCCAAGGTAGATGAAGATCATACAACCACACTCCAAAAATTATTTGATCTGTTGAGAAAATATCAATTGAAATTAAATCCATCCAAATGCACATTTGGGGCAACTT
CGGGAAAACTACTGGGATTCATCGTCAGCAAAGAAGAGATCAAAGTGGATCCAGATAAAGTAAGGGCTATCATGGAAATGCCATCCCCTAAAACAGAAAAAGAAATTCGA
GGCTTTTTGGGAAGATTGAACTACATATCCAGATTTATCTCACATTTAACACCAACATGCGAACCAATCTTCAAGTTCTTACGTAAAAACAACCCAGGAAAATGGAATGA
GGATTGTGAAGAAGCTTTCAACAAAATTAAGCAATATTTGCAGAGCCCACCAGTACTGATACCTCCAGCTCCAGGGCGACCGTTAATCTTGTATTTAACAGTATTAGAAA
GTTCCATGGGTGGTGTTCTAGGACAACACGATTTATCAGGGAAGAAGGAGCATGCCATTTATTATTTGAGCAAAAAGTTTACCGATTATGAATCTAGATACTCAATGTTA
GAGTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MPFGLKNAGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKVDEDHTTTLQKLFDLLRKYQLKLNPSKCTFGATSGKLLGFIVSKEEIKVDPDKVRAIMEMPSPKTEKEIR
GFLGRLNYISRFISHLTPTCEPIFKFLRKNNPGKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMGGVLGQHDLSGKKEHAIYYLSKKFTDYESRYSML
E

Cmc06g0169741 (gene) of Melon (Charmono) v1.1 genome