; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0170251 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0170251
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionBeta-galactosidase
Genome locationCMiso1.1chr06:25430359..25431225
RNA-Seq ExpressionCmc06g0170251
SyntenyCmc06g0170251
Gene Ontology termsGO:0006116 - NADH oxidation (biological process)
GO:0015074 - DNA integration (biological process)
GO:0005739 - mitochondrion (cellular component)
GO:0005777 - peroxisome (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003954 - NADH dehydrogenase activity (molecular function)
GO:0005525 - GTP binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR025724 - GAG-pre-integrase domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025363.1 Beta-galactosidase [Cucumis melo var. makuwa]3.8e-15191.7Show/hide
Query:  MSSRRTIGTVWHSRGLYILDEDTSCSSFSRVSLLSSYFSTSKQDCILWHFRLGHPNFTYMQYLFPQLFSKLDVSSLSCDVCIWAKQHRVSFPSQPYKPTQ
        MSS RTIGT  HSRGLYILD+DTSCSS SRVSLLSSYFSTS+QDC+LWHFRLGHPNFTYMQ+LFP LFSK+DVSSLSCDVCI AKQHRVSFPSQPYKPTQ
Subjt:  MSSRRTIGTVWHSRGLYILDEDTSCSSFSRVSLLSSYFSTSKQDCILWHFRLGHPNFTYMQYLFPQLFSKLDVSSLSCDVCIWAKQHRVSFPSQPYKPTQ

Query:  LFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHTRLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-
         F LIHSDVWGPSKVTT SGKRWFVTFIDDHTRLTWVYLI+DKSEV SIFQNFYHTI+TQFHTKIAILRSDNGREFQNHNLSEFLASKGIVH TSCAYT 
Subjt:  LFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHTRLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-

Query:  QQNGVAERKNCHLVEVARSLMLSTSLPAYLWGDAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAYVHNFGPN
        QQNGVAERKN HLVEVARSLMLSTSLP+YLWGDAILT AHLINRMPSRILHLQTPL+CLKESYPST LVSEVPLRVFGCTAYVHNFGPN
Subjt:  QQNGVAERKNCHLVEVARSLMLSTSLPAYLWGDAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAYVHNFGPN

KAA0034386.1 Beta-galactosidase [Cucumis melo var. makuwa]3.8e-15191.7Show/hide
Query:  MSSRRTIGTVWHSRGLYILDEDTSCSSFSRVSLLSSYFSTSKQDCILWHFRLGHPNFTYMQYLFPQLFSKLDVSSLSCDVCIWAKQHRVSFPSQPYKPTQ
        MSS RTIGT  HSRGLYILD+DTSCSS SRVSLLSSYFSTS+QDC+LWHFRLGHPNFTYMQ+LFP LFSK+DVSSLSCDVCI AKQHRVSFPSQPYKPTQ
Subjt:  MSSRRTIGTVWHSRGLYILDEDTSCSSFSRVSLLSSYFSTSKQDCILWHFRLGHPNFTYMQYLFPQLFSKLDVSSLSCDVCIWAKQHRVSFPSQPYKPTQ

Query:  LFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHTRLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-
         F LIHSDVWGPSKVTT SGKRWFVTFIDDHTRLTWVYLI+DKSEV SIFQNFYHTI+TQFHTKIAILRSDNGREFQNHNLSEFLASKGIVH TSCAYT 
Subjt:  LFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHTRLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-

Query:  QQNGVAERKNCHLVEVARSLMLSTSLPAYLWGDAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAYVHNFGPN
        QQNGVAERKN HLVEVARSLMLSTSLP+YLWGDAILT AHLINRMPSRILHLQTPL+CLKESYPST LVSEVPLRVFGCTAYVHNFGPN
Subjt:  QQNGVAERKNCHLVEVARSLMLSTSLPAYLWGDAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAYVHNFGPN

KAA0048203.1 Beta-galactosidase [Cucumis melo var. makuwa]3.8e-15191.7Show/hide
Query:  MSSRRTIGTVWHSRGLYILDEDTSCSSFSRVSLLSSYFSTSKQDCILWHFRLGHPNFTYMQYLFPQLFSKLDVSSLSCDVCIWAKQHRVSFPSQPYKPTQ
        MSS RTIGT  HSRGLYILD+DTSCSS SRVSLLSSYFSTS+QDC+LWHFRLGHPNFTYMQ+LFP LFSK+DVSSLSCDVCI AKQHRVSFPSQPYKPTQ
Subjt:  MSSRRTIGTVWHSRGLYILDEDTSCSSFSRVSLLSSYFSTSKQDCILWHFRLGHPNFTYMQYLFPQLFSKLDVSSLSCDVCIWAKQHRVSFPSQPYKPTQ

Query:  LFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHTRLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-
         F LIHSDVWGPSKVTT SGKRWFVTFIDDHTRLTWVYLI+DKSEV SIFQNFYHTI+TQFHTKIAILRSDNGREFQNHNLSEFLASKGIVH TSCAYT 
Subjt:  LFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHTRLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-

Query:  QQNGVAERKNCHLVEVARSLMLSTSLPAYLWGDAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAYVHNFGPN
        QQNGVAERKN HLVEVARSLMLSTSLP+YLWGDAILT AHLINRMPSRILHLQTPL+CLKESYPST LVSEVPLRVFGCTAYVHNFGPN
Subjt:  QQNGVAERKNCHLVEVARSLMLSTSLPAYLWGDAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAYVHNFGPN

TYJ99952.1 Beta-galactosidase [Cucumis melo var. makuwa]3.8e-15191.7Show/hide
Query:  MSSRRTIGTVWHSRGLYILDEDTSCSSFSRVSLLSSYFSTSKQDCILWHFRLGHPNFTYMQYLFPQLFSKLDVSSLSCDVCIWAKQHRVSFPSQPYKPTQ
        MSS RTIGT  HSRGLYILD+DTSCSS SRVSLLSSYFSTS+QDC+LWHFRLGHPNFTYMQ+LFP LFSK+DVSSLSCDVCI AKQHRVSFPSQPYKPTQ
Subjt:  MSSRRTIGTVWHSRGLYILDEDTSCSSFSRVSLLSSYFSTSKQDCILWHFRLGHPNFTYMQYLFPQLFSKLDVSSLSCDVCIWAKQHRVSFPSQPYKPTQ

Query:  LFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHTRLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-
         F LIHSDVWGPSKVTT SGKRWFVTFIDDHTRLTWVYLI+DKSEV SIFQNFYHTI+TQFHTKIAILRSDNGREFQNHNLSEFLASKGIVH TSCAYT 
Subjt:  LFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHTRLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-

Query:  QQNGVAERKNCHLVEVARSLMLSTSLPAYLWGDAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAYVHNFGPN
        QQNGVAERKN HLVEVARSLMLSTSLP+YLWGDAILT AHLINRMPSRILHLQTPL+CLKESYPST LVSEVPLRVFGCTAYVHNFGPN
Subjt:  QQNGVAERKNCHLVEVARSLMLSTSLPAYLWGDAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAYVHNFGPN

TYK08054.1 Beta-galactosidase [Cucumis melo var. makuwa]3.8e-15191.7Show/hide
Query:  MSSRRTIGTVWHSRGLYILDEDTSCSSFSRVSLLSSYFSTSKQDCILWHFRLGHPNFTYMQYLFPQLFSKLDVSSLSCDVCIWAKQHRVSFPSQPYKPTQ
        MSS RTIGT  HSRGLYILD+DTSCSS SRVSLLSSYFSTS+QDC+LWHFRLGHPNFTYMQ+LFP LFSK+DVSSLSCDVCI AKQHRVSFPSQPYKPTQ
Subjt:  MSSRRTIGTVWHSRGLYILDEDTSCSSFSRVSLLSSYFSTSKQDCILWHFRLGHPNFTYMQYLFPQLFSKLDVSSLSCDVCIWAKQHRVSFPSQPYKPTQ

Query:  LFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHTRLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-
         F LIHSDVWGPSKVTT SGKRWFVTFIDDHTRLTWVYLI+DKSEV SIFQNFYHTI+TQFHTKIAILRSDNGREFQNHNLSEFLASKGIVH TSCAYT 
Subjt:  LFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHTRLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-

Query:  QQNGVAERKNCHLVEVARSLMLSTSLPAYLWGDAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAYVHNFGPN
        QQNGVAERKN HLVEVARSLMLSTSLP+YLWGDAILT AHLINRMPSRILHLQTPL+CLKESYPST LVSEVPLRVFGCTAYVHNFGPN
Subjt:  QQNGVAERKNCHLVEVARSLMLSTSLPAYLWGDAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAYVHNFGPN

TrEMBL top hitse value%identityAlignment
A0A5A7SM64 Beta-galactosidase1.8e-15191.7Show/hide
Query:  MSSRRTIGTVWHSRGLYILDEDTSCSSFSRVSLLSSYFSTSKQDCILWHFRLGHPNFTYMQYLFPQLFSKLDVSSLSCDVCIWAKQHRVSFPSQPYKPTQ
        MSS RTIGT  HSRGLYILD+DTSCSS SRVSLLSSYFSTS+QDC+LWHFRLGHPNFTYMQ+LFP LFSK+DVSSLSCDVCI AKQHRVSFPSQPYKPTQ
Subjt:  MSSRRTIGTVWHSRGLYILDEDTSCSSFSRVSLLSSYFSTSKQDCILWHFRLGHPNFTYMQYLFPQLFSKLDVSSLSCDVCIWAKQHRVSFPSQPYKPTQ

Query:  LFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHTRLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-
         F LIHSDVWGPSKVTT SGKRWFVTFIDDHTRLTWVYLI+DKSEV SIFQNFYHTI+TQFHTKIAILRSDNGREFQNHNLSEFLASKGIVH TSCAYT 
Subjt:  LFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHTRLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-

Query:  QQNGVAERKNCHLVEVARSLMLSTSLPAYLWGDAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAYVHNFGPN
        QQNGVAERKN HLVEVARSLMLSTSLP+YLWGDAILT AHLINRMPSRILHLQTPL+CLKESYPST LVSEVPLRVFGCTAYVHNFGPN
Subjt:  QQNGVAERKNCHLVEVARSLMLSTSLPAYLWGDAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAYVHNFGPN

A0A5A7V0Y9 Beta-galactosidase1.8e-15191.7Show/hide
Query:  MSSRRTIGTVWHSRGLYILDEDTSCSSFSRVSLLSSYFSTSKQDCILWHFRLGHPNFTYMQYLFPQLFSKLDVSSLSCDVCIWAKQHRVSFPSQPYKPTQ
        MSS RTIGT  HSRGLYILD+DTSCSS SRVSLLSSYFSTS+QDC+LWHFRLGHPNFTYMQ+LFP LFSK+DVSSLSCDVCI AKQHRVSFPSQPYKPTQ
Subjt:  MSSRRTIGTVWHSRGLYILDEDTSCSSFSRVSLLSSYFSTSKQDCILWHFRLGHPNFTYMQYLFPQLFSKLDVSSLSCDVCIWAKQHRVSFPSQPYKPTQ

Query:  LFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHTRLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-
         F LIHSDVWGPSKVTT SGKRWFVTFIDDHTRLTWVYLI+DKSEV SIFQNFYHTI+TQFHTKIAILRSDNGREFQNHNLSEFLASKGIVH TSCAYT 
Subjt:  LFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHTRLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-

Query:  QQNGVAERKNCHLVEVARSLMLSTSLPAYLWGDAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAYVHNFGPN
        QQNGVAERKN HLVEVARSLMLSTSLP+YLWGDAILT AHLINRMPSRILHLQTPL+CLKESYPST LVSEVPLRVFGCTAYVHNFGPN
Subjt:  QQNGVAERKNCHLVEVARSLMLSTSLPAYLWGDAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAYVHNFGPN

A0A5A7VLQ7 Beta-galactosidase1.8e-15191.7Show/hide
Query:  MSSRRTIGTVWHSRGLYILDEDTSCSSFSRVSLLSSYFSTSKQDCILWHFRLGHPNFTYMQYLFPQLFSKLDVSSLSCDVCIWAKQHRVSFPSQPYKPTQ
        MSS RTIGT  HSRGLYILD+DTSCSS SRVSLLSSYFSTS+QDC+LWHFRLGHPNFTYMQ+LFP LFSK+DVSSLSCDVCI AKQHRVSFPSQPYKPTQ
Subjt:  MSSRRTIGTVWHSRGLYILDEDTSCSSFSRVSLLSSYFSTSKQDCILWHFRLGHPNFTYMQYLFPQLFSKLDVSSLSCDVCIWAKQHRVSFPSQPYKPTQ

Query:  LFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHTRLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-
         F LIHSDVWGPSKVTT SGKRWFVTFIDDHTRLTWVYLI+DKSEV SIFQNFYHTI+TQFHTKIAILRSDNGREFQNHNLSEFLASKGIVH TSCAYT 
Subjt:  LFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHTRLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-

Query:  QQNGVAERKNCHLVEVARSLMLSTSLPAYLWGDAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAYVHNFGPN
        QQNGVAERKN HLVEVARSLMLSTSLP+YLWGDAILT AHLINRMPSRILHLQTPL+CLKESYPST LVSEVPLRVFGCTAYVHNFGPN
Subjt:  QQNGVAERKNCHLVEVARSLMLSTSLPAYLWGDAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAYVHNFGPN

A0A5D3BJK7 Beta-galactosidase1.8e-15191.7Show/hide
Query:  MSSRRTIGTVWHSRGLYILDEDTSCSSFSRVSLLSSYFSTSKQDCILWHFRLGHPNFTYMQYLFPQLFSKLDVSSLSCDVCIWAKQHRVSFPSQPYKPTQ
        MSS RTIGT  HSRGLYILD+DTSCSS SRVSLLSSYFSTS+QDC+LWHFRLGHPNFTYMQ+LFP LFSK+DVSSLSCDVCI AKQHRVSFPSQPYKPTQ
Subjt:  MSSRRTIGTVWHSRGLYILDEDTSCSSFSRVSLLSSYFSTSKQDCILWHFRLGHPNFTYMQYLFPQLFSKLDVSSLSCDVCIWAKQHRVSFPSQPYKPTQ

Query:  LFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHTRLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-
         F LIHSDVWGPSKVTT SGKRWFVTFIDDHTRLTWVYLI+DKSEV SIFQNFYHTI+TQFHTKIAILRSDNGREFQNHNLSEFLASKGIVH TSCAYT 
Subjt:  LFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHTRLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-

Query:  QQNGVAERKNCHLVEVARSLMLSTSLPAYLWGDAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAYVHNFGPN
        QQNGVAERKN HLVEVARSLMLSTSLP+YLWGDAILT AHLINRMPSRILHLQTPL+CLKESYPST LVSEVPLRVFGCTAYVHNFGPN
Subjt:  QQNGVAERKNCHLVEVARSLMLSTSLPAYLWGDAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAYVHNFGPN

A0A5D3C4T4 Beta-galactosidase1.8e-15191.7Show/hide
Query:  MSSRRTIGTVWHSRGLYILDEDTSCSSFSRVSLLSSYFSTSKQDCILWHFRLGHPNFTYMQYLFPQLFSKLDVSSLSCDVCIWAKQHRVSFPSQPYKPTQ
        MSS RTIGT  HSRGLYILD+DTSCSS SRVSLLSSYFSTS+QDC+LWHFRLGHPNFTYMQ+LFP LFSK+DVSSLSCDVCI AKQHRVSFPSQPYKPTQ
Subjt:  MSSRRTIGTVWHSRGLYILDEDTSCSSFSRVSLLSSYFSTSKQDCILWHFRLGHPNFTYMQYLFPQLFSKLDVSSLSCDVCIWAKQHRVSFPSQPYKPTQ

Query:  LFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHTRLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-
         F LIHSDVWGPSKVTT SGKRWFVTFIDDHTRLTWVYLI+DKSEV SIFQNFYHTI+TQFHTKIAILRSDNGREFQNHNLSEFLASKGIVH TSCAYT 
Subjt:  LFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHTRLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-

Query:  QQNGVAERKNCHLVEVARSLMLSTSLPAYLWGDAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAYVHNFGPN
        QQNGVAERKN HLVEVARSLMLSTSLP+YLWGDAILT AHLINRMPSRILHLQTPL+CLKESYPST LVSEVPLRVFGCTAYVHNFGPN
Subjt:  QQNGVAERKNCHLVEVARSLMLSTSLPAYLWGDAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAYVHNFGPN

SwissProt top hitse value%identityAlignment
O13527 Truncated transposon Ty1-A Gag-Pol polyprotein9.7e-1727.36Show/hide
Query:  FRLGHPNFTYMQYLFPQLFSKLDVSSLSCDVCIWAKQHRVSFPSQPYKPT-QLFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHTRLTWVYLITDKSE--V
        + L +   TY         S +D     C +    K   +      Y+ + + F  +H+D++GP      S   +F++F D+ T+L WVY + D+ E  +
Subjt:  FRLGHPNFTYMQYLFPQLFSKLDVSSLSCDVCIWAKQHRVSFPSQPYKPT-QLFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHTRLTWVYLITDKSE--V

Query:  SSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVH-HTSCAYTQQNGVAERKNCHLVEVARSLMLSTSLPAYLWGDAILTTAHLINRMP
          +F      I+ QF   + +++ D G E+ N  L +FL   GI   +T+ A ++ +GVAER N  L++  R+ +  + LP +LW  AI  +  + N + 
Subjt:  SSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVH-HTSCAYTQQNGVAERKNCHLVEVARSLMLSTSLPAYLWGDAILTTAHLINRMP

Query:  S
        S
Subjt:  S

P04146 Copia protein7.4e-3335.55Show/hide
Query:  KQDCILWHFRLGHPNFTYM-------QYLFPQLFSKLDVSSLSCDVCIWAKQHRVSFPSQPYKP--TQLFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHT
        K +  LWH R GH +   +        +    L + L++S   C+ C+  KQ R+ F     K    +   ++HSDV GP    T   K +FV F+D  T
Subjt:  KQDCILWHFRLGHPNFTYM-------QYLFPQLFSKLDVSSLSCDVCIWAKQHRVSFPSQPYKP--TQLFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHT

Query:  RLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYTQQ-NGVAERKNCHLVEVARSLMLSTSLPAYLWG
             YLI  KS+V S+FQ+F    E  F+ K+  L  DNGRE+ ++ + +F   KGI +H +  +T Q NGV+ER    + E AR+++    L    WG
Subjt:  RLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYTQQ-NGVAERKNCHLVEVARSLMLSTSLPAYLWG

Query:  DAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVP----LRVFGCTAYVH
        +A+LT  +LINR+PSR L     ++  K  Y   H  ++ P    LRVFG T YVH
Subjt:  DAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVP----LRVFGCTAYVH

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.9e-4139.17Show/hide
Query:  LWHFRLGHPNFTYMQYLFPQ-LFSKLDVSSLS-CDVCIWAKQHRVSFPSQPYKPTQLFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHTRLTWVYLITDKS
        LWH R+GH +   +Q L  + L S    +++  CD C++ KQHRVSF +   +   +  L++SDV GP ++ +  G ++FVTFIDD +R  WVY++  K 
Subjt:  LWHFRLGHPNFTYMQYLFPQ-LFSKLDVSSLS-CDVCIWAKQHRVSFPSQPYKPTQLFTLIHSDVWGPSKVTTPSGKRWFVTFIDDHTRLTWVYLITDKS

Query:  EVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-QQNGVAERKNCHLVEVARSLMLSTSLPAYLWGDAILTTAHLINR
        +V  +FQ F+  +E +   K+  LRSDNG E+ +    E+ +S GI H  +   T Q NGVAER N  +VE  RS++    LP   WG+A+ T  +LINR
Subjt:  EVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-QQNGVAERKNCHLVEVARSLMLSTSLPAYLWGDAILTTAHLINR

Query:  MPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAYVH
         PS  L  + P     E   +   VS   L+VFGC A+ H
Subjt:  MPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAYVH

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.5e-3335.77Show/hide
Query:  SSFSRVSLLSSYFSTSKQDCILWHFRLGHPNFTYMQYLFPQL-FSKLDVSS--LSCDVCIWAKQHRVSFPSQPYKPTQLFTLIHSDVWGPSKVTTPSGKR
        +S   VSL +S   +SK     WH RLGHP  + +  +      S L+ S   LSC  C+  K ++V F       T+    I+SDVW  S + +    R
Subjt:  SSFSRVSLLSSYFSTSKQDCILWHFRLGHPNFTYMQYLFPQL-FSKLDVSS--LSCDVCIWAKQHRVSFPSQPYKPTQLFTLIHSDVWGPSKVTTPSGKR

Query:  WFVTFIDDHTRLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-QQNGVAERKNCHLVEVARSLML
        ++V F+D  TR TW+Y +  KS+V   F  F + +E +F T+I    SDNG EF    L E+ +  GI H TS  +T + NG++ERK+ H+VE   +L+ 
Subjt:  WFVTFIDDHTRLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-QQNGVAERKNCHLVEVARSLML

Query:  STSLPAYLWGDAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAY
          S+P   W  A     +LINR+P+ +L L++P   L  + P+        LRVFGC  Y
Subjt:  STSLPAYLWGDAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAY

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE21.9e-3335.38Show/hide
Query:  SSFSRVSLLSSYFSTSKQDCILWHFRLGHPNFTYMQYLFP-QLFSKLDVSS--LSCDVCIWAKQHRVSFPSQPYKPTQLFTLIHSDVWGPSKVTTPSGKR
        +S   VS+ +S    SK     WH RLGHP+   +  +        L+ S   LSC  C   K H+V F +     ++    I+SDVW  S + +    R
Subjt:  SSFSRVSLLSSYFSTSKQDCILWHFRLGHPNFTYMQYLFP-QLFSKLDVSS--LSCDVCIWAKQHRVSFPSQPYKPTQLFTLIHSDVWGPSKVTTPSGKR

Query:  WFVTFIDDHTRLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-QQNGVAERKNCHLVEVARSLML
        ++V F+D  TR TW+Y +  KS+V   F  F   +E +F T+I  L SDNG EF    L ++L+  GI H TS  +T + NG++ERK+ H+VE+  +L+ 
Subjt:  WFVTFIDDHTRLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYT-QQNGVAERKNCHLVEVARSLML

Query:  STSLPAYLWGDAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAY
          S+P   W  A     +LINR+P+ +L LQ+P   L    P+        L+VFGC  Y
Subjt:  STSLPAYLWGDAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAY

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTCGAGAAGAACGATTGGCACTGTCTGGCATAGCAGGGGACTTTACATCCTTGATGAAGATACCTCCTGTAGTAGTTTCTCTAGGGTTAGTTTACTGTCGTCCTA
CTTTAGCACTTCTAAACAAGATTGCATATTGTGGCATTTTCGATTGGGCCACCCAAACTTTACATATATGCAATATTTATTTCCCCAACTTTTTTCTAAACTTGATGTCT
CTTCTCTATCTTGTGATGTGTGTATCTGGGCTAAACAACATCGGGTCTCTTTTCCCTCACAACCATATAAACCTACACAATTGTTTACCCTCATCCATAGTGACGTTTGG
GGTCCTTCCAAGGTCACCACCCCATCGGGAAAGCGGTGGTTTGTAACTTTCATCGATGATCATACCCGTCTTACTTGGGTCTACCTTATTACAGATAAATCCGAGGTTTC
ATCCATTTTCCAAAACTTCTATCATACTATTGAAACACAATTCCATACAAAAATTGCAATTCTTCGGAGTGATAATGGTCGAGAATTCCAAAACCATAACCTTAGTGAAT
TTCTAGCCTCCAAGGGGATTGTTCACCATACCTCGTGTGCCTACACTCAACAAAATGGAGTGGCCGAACGAAAAAACTGTCACCTTGTGGAAGTAGCCCGTTCACTTATG
CTTTCCACTTCCCTTCCAGCATACCTGTGGGGAGATGCTATTCTTACAACCGCTCATTTAATCAATAGAATGCCTTCTCGTATCCTCCACCTTCAGACTCCCTTAAATTG
TCTTAAGGAGTCTTACCCCTCTACTCATCTTGTTTCTGAGGTTCCTCTTCGTGTGTTTGGGTGTACCGCTTATGTCCATAATTTTGGCCCTAATTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGCTCGAGAAGAACGATTGGCACTGTCTGGCATAGCAGGGGACTTTACATCCTTGATGAAGATACCTCCTGTAGTAGTTTCTCTAGGGTTAGTTTACTGTCGTCCTA
CTTTAGCACTTCTAAACAAGATTGCATATTGTGGCATTTTCGATTGGGCCACCCAAACTTTACATATATGCAATATTTATTTCCCCAACTTTTTTCTAAACTTGATGTCT
CTTCTCTATCTTGTGATGTGTGTATCTGGGCTAAACAACATCGGGTCTCTTTTCCCTCACAACCATATAAACCTACACAATTGTTTACCCTCATCCATAGTGACGTTTGG
GGTCCTTCCAAGGTCACCACCCCATCGGGAAAGCGGTGGTTTGTAACTTTCATCGATGATCATACCCGTCTTACTTGGGTCTACCTTATTACAGATAAATCCGAGGTTTC
ATCCATTTTCCAAAACTTCTATCATACTATTGAAACACAATTCCATACAAAAATTGCAATTCTTCGGAGTGATAATGGTCGAGAATTCCAAAACCATAACCTTAGTGAAT
TTCTAGCCTCCAAGGGGATTGTTCACCATACCTCGTGTGCCTACACTCAACAAAATGGAGTGGCCGAACGAAAAAACTGTCACCTTGTGGAAGTAGCCCGTTCACTTATG
CTTTCCACTTCCCTTCCAGCATACCTGTGGGGAGATGCTATTCTTACAACCGCTCATTTAATCAATAGAATGCCTTCTCGTATCCTCCACCTTCAGACTCCCTTAAATTG
TCTTAAGGAGTCTTACCCCTCTACTCATCTTGTTTCTGAGGTTCCTCTTCGTGTGTTTGGGTGTACCGCTTATGTCCATAATTTTGGCCCTAATTAG
Protein sequenceShow/hide protein sequence
MSSRRTIGTVWHSRGLYILDEDTSCSSFSRVSLLSSYFSTSKQDCILWHFRLGHPNFTYMQYLFPQLFSKLDVSSLSCDVCIWAKQHRVSFPSQPYKPTQLFTLIHSDVW
GPSKVTTPSGKRWFVTFIDDHTRLTWVYLITDKSEVSSIFQNFYHTIETQFHTKIAILRSDNGREFQNHNLSEFLASKGIVHHTSCAYTQQNGVAERKNCHLVEVARSLM
LSTSLPAYLWGDAILTTAHLINRMPSRILHLQTPLNCLKESYPSTHLVSEVPLRVFGCTAYVHNFGPN