; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0170351 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0170351
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptionzinc finger CCCH domain-containing protein 5
Genome locationCMiso1.1chr06:25604929..25611013
RNA-Seq ExpressionCmc06g0170351
SyntenyCmc06g0170351
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0089701 - U2AF (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000571 - Zinc finger, CCCH-type
IPR009145 - U2 auxiliary factor small subunit


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134259.1 zinc finger CCCH domain-containing protein 5 isoform X2 [Cucumis sativus]7.7e-13392.5Show/hide
Query:  MEEPKLIGGGGGGEEEEEEEEEEEVKPCSVDNLCRKEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAW
        MEE +LIG           EEEEEVKPCSV+NLCRKEKRKALKKIKRKQLRKELALKRLQEEE RLNDPEEQRR+QLMELEEEERSERERKLFEERERAW
Subjt:  MEEPKLIGGGGGGEEEEEEEEEEEVKPCSVDNLCRKEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAW

Query:  MEAMELKKKKMAEEEEEEQQRRALEEESTPRQAENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFT
        MEAMELKKKKMAEEEEEEQQRRALEEESTPR+AENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKK VEPEKS EDAHRPTSNPLPPQSEAFT
Subjt:  MEAMELKKKKMAEEEEEEQQRRALEEESTPRQAENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFT

Query:  DYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE
        DYKNTPIST+QVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYP+KSCTLLIKNMYNGPGLAWEQDEGLE
Subjt:  DYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE

XP_008452219.1 PREDICTED: zinc finger CCCH domain-containing protein 5 [Cucumis melo]4.1e-14298.57Show/hide
Query:  MEEPKLIGGGGGGEEEEEEEEEEEVKPCSVDNLCRKEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAW
        MEEPKL GGGGGG   EEEEEEEEVKPCSVDNLCRKEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAW
Subjt:  MEEPKLIGGGGGGEEEEEEEEEEEVKPCSVDNLCRKEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAW

Query:  MEAMELKKKKMAEEEEEEQQRRALEEESTPRQAENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFT
        MEAMELKKKKMAEEEEEEQQRRALEEESTPRQAENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFT
Subjt:  MEAMELKKKKMAEEEEEEQQRRALEEESTPRQAENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFT

Query:  DYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE
        DYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE
Subjt:  DYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE

XP_031738075.1 zinc finger CCCH domain-containing protein 5 isoform X1 [Cucumis sativus]7.7e-13392.5Show/hide
Query:  MEEPKLIGGGGGGEEEEEEEEEEEVKPCSVDNLCRKEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAW
        MEE +LIG           EEEEEVKPCSV+NLCRKEKRKALKKIKRKQLRKELALKRLQEEE RLNDPEEQRR+QLMELEEEERSERERKLFEERERAW
Subjt:  MEEPKLIGGGGGGEEEEEEEEEEEVKPCSVDNLCRKEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAW

Query:  MEAMELKKKKMAEEEEEEQQRRALEEESTPRQAENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFT
        MEAMELKKKKMAEEEEEEQQRRALEEESTPR+AENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKK VEPEKS EDAHRPTSNPLPPQSEAFT
Subjt:  MEAMELKKKKMAEEEEEEQQRRALEEESTPRQAENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFT

Query:  DYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE
        DYKNTPIST+QVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYP+KSCTLLIKNMYNGPGLAWEQDEGLE
Subjt:  DYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE

XP_031738076.1 zinc finger CCCH domain-containing protein 5 isoform X3 [Cucumis sativus]7.7e-13392.5Show/hide
Query:  MEEPKLIGGGGGGEEEEEEEEEEEVKPCSVDNLCRKEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAW
        MEE +LIG           EEEEEVKPCSV+NLCRKEKRKALKKIKRKQLRKELALKRLQEEE RLNDPEEQRR+QLMELEEEERSERERKLFEERERAW
Subjt:  MEEPKLIGGGGGGEEEEEEEEEEEVKPCSVDNLCRKEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAW

Query:  MEAMELKKKKMAEEEEEEQQRRALEEESTPRQAENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFT
        MEAMELKKKKMAEEEEEEQQRRALEEESTPR+AENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKK VEPEKS EDAHRPTSNPLPPQSEAFT
Subjt:  MEAMELKKKKMAEEEEEEQQRRALEEESTPRQAENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFT

Query:  DYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE
        DYKNTPIST+QVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYP+KSCTLLIKNMYNGPGLAWEQDEGLE
Subjt:  DYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE

XP_038905963.1 zinc finger CCCH domain-containing protein 5 isoform X3 [Benincasa hispida]2.5e-13190.43Show/hide
Query:  MEEPKLIGGGGGGEEEEEEEEEEEVKPCSVDNLCRKEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAW
        MEEP LIG             EEE KPCS++NLCRKEKRKALKKIKRKQLRKE+ALK LQEEEARLNDPEEQRR++LMELEEEERSERERKLFEE ERAW
Subjt:  MEEPKLIGGGGGGEEEEEEEEEEEVKPCSVDNLCRKEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAW

Query:  MEAMELKKKKMAEEEEEEQQRRALEEESTPRQAENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFT
        MEAMELKKKKMAEEEEEEQQRRALEEEST RQAENENEFNEEDGWEYIEGPAE+IWKGEEIILKKKLIKVPKKGV+PEKSLEDAHRPTSNPLPPQSEAFT
Subjt:  MEAMELKKKKMAEEEEEEQQRRALEEESTPRQAENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFT

Query:  DYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLEVC
        DY N PISTRQVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLEVC
Subjt:  DYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLEVC

TrEMBL top hitse value%identityAlignment
A0A1S3BUH0 zinc finger CCCH domain-containing protein 52.0e-14298.57Show/hide
Query:  MEEPKLIGGGGGGEEEEEEEEEEEVKPCSVDNLCRKEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAW
        MEEPKL GGGGGG   EEEEEEEEVKPCSVDNLCRKEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAW
Subjt:  MEEPKLIGGGGGGEEEEEEEEEEEVKPCSVDNLCRKEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAW

Query:  MEAMELKKKKMAEEEEEEQQRRALEEESTPRQAENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFT
        MEAMELKKKKMAEEEEEEQQRRALEEESTPRQAENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFT
Subjt:  MEAMELKKKKMAEEEEEEQQRRALEEESTPRQAENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFT

Query:  DYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE
        DYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE
Subjt:  DYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE

A0A5A7V495 Zinc finger CCCH domain-containing protein 51.5e-126100Show/hide
Query:  KEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAWMEAMELKKKKMAEEEEEEQQRRALEEESTPRQAEN
        KEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAWMEAMELKKKKMAEEEEEEQQRRALEEESTPRQAEN
Subjt:  KEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAWMEAMELKKKKMAEEEEEEQQRRALEEESTPRQAEN

Query:  ENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFTDYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFH
        ENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFTDYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFH
Subjt:  ENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFTDYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFH

Query:  LKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE
        LKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE
Subjt:  LKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE

A0A5D3BNF0 Zinc finger CCCH domain-containing protein 51.5e-126100Show/hide
Query:  KEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAWMEAMELKKKKMAEEEEEEQQRRALEEESTPRQAEN
        KEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAWMEAMELKKKKMAEEEEEEQQRRALEEESTPRQAEN
Subjt:  KEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAWMEAMELKKKKMAEEEEEEQQRRALEEESTPRQAEN

Query:  ENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFTDYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFH
        ENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFTDYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFH
Subjt:  ENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFTDYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFH

Query:  LKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE
        LKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE
Subjt:  LKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE

A0A6J1ERZ7 zinc finger CCCH domain-containing protein 52.4e-12487.02Show/hide
Query:  MEEPKLIGGGGGGEEEEEEEEEEEV----KPCSVDNLCRKEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEER
        MEEP+ +G      EEEE+ +  E     KPCS++NLCRKEKRKALKKIKRKQLRKE ALK+LQEEEARLNDPEEQRR++LMELEEEERSERERKLFEER
Subjt:  MEEPKLIGGGGGGEEEEEEEEEEEV----KPCSVDNLCRKEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEER

Query:  ERAWMEAMEL-KKKKMAEEEEEEQQRRALEEESTPRQAENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQ
        ERAW+EAMEL KKKKMAEEEEEEQ+RRALEEEST RQAENENE NEEDGWEYIEGPAE+IWKG+EIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQ
Subjt:  ERAWMEAMEL-KKKKMAEEEEEEQQRRALEEESTPRQAENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQ

Query:  SEAFTDYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE
        SE  TD KN PISTRQVI+DVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE
Subjt:  SEAFTDYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE

A0A6J1J5M6 zinc finger CCCH domain-containing protein 52.9e-12586.62Show/hide
Query:  MEEPKLIGGGGGGEEEEEEEEEEEV----KPCSVDNLCRKEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEER
        M+EP+ +G      EEEE+ +  E     KPCS++NLCRKEKRKALKKIKRKQLRKE ALK+LQEEE RLNDPEE+RR++LMELEEEERSERERKLFEER
Subjt:  MEEPKLIGGGGGGEEEEEEEEEEEV----KPCSVDNLCRKEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEER

Query:  ERAWMEAMELKKKKMAEEEEEEQQRRALEEESTPRQAENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQS
        ERAW+EAMELKKKKMAEEEEEEQ+RRALEEEST RQAENENE NEEDGWEYIEGPAE+IWKGEEIILKKKLIK+PKKGVEPEKSLEDAHRPTSNPLPPQS
Subjt:  ERAWMEAMELKKKKMAEEEEEEQQRRALEEESTPRQAENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQS

Query:  EAFTDYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE
        E FTD KN PISTRQVI+DVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE
Subjt:  EAFTDYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE

SwissProt top hitse value%identityAlignment
Q15695 Putative U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 16.2e-0833.47Show/hide
Query:  KEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERER-KLFEE---RERAWMEAMELKKKK--MAEEEEEEQQRRALEEEST
        K+ R ALKK KRK+ R+ELA  R   +     + EE   ++  +LEEE+  ERER +L EE   RE+   E   +KK+K   A++  EEQ+R+  E+   
Subjt:  KEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERER-KLFEE---RERAWMEAMELKKKK--MAEEEEEEQQRRALEEEST

Query:  PRQAENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFTDYKNTPISTRQVIEDVASQVPNFGTEQDK
         ++ E E E  ++                     K+K   V K   + E  LE++     NP PP      D++                      E+D+
Subjt:  PRQAENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFTDYKNTPISTRQVIEDVASQVPNFGTEQDK

Query:  SHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGL
        ++CPF+ KTGACRFG RCSR H +P  S TLLIK+M+   G+
Subjt:  SHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGL

Q15696 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 28.6e-1034.84Show/hide
Query:  KEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERER-KLFEE---RERAWMEAMELKKKK--MAEEEEEEQQRRALE--EE
        K+ R ALKK KRK+ R+ELA  RL++      + EE   ++  +LEEE+  ERER +L EE   RE+   E   +KK+K   A++ +EEQ+R+  E  EE
Subjt:  KEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERER-KLFEE---RERAWMEAMELKKKK--MAEEEEEEQQRRALE--EE

Query:  STPRQAENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFTDYKNTPISTRQVIEDVASQVPNFGTEQ
           ++ E E +  +E              K +E  L+K L        + E  LE+      NP PP      D++                      E+
Subjt:  STPRQAENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFTDYKNTPISTRQVIEDVASQVPNFGTEQ

Query:  DKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGL
        D+++CPF+ KTGACRFG RCSR H +P  S TLLIK+M+   G+
Subjt:  DKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGL

Q62377 U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein 22.6e-0632.63Show/hide
Query:  KEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAWMEAMELKKKKMAEEEEEEQQRRALEEESTPRQAEN
        ++K  AL+K +R++ R++ AL RL+E E    + EE        L EE+R E ER L EER+R   E + L+++K    +EE + ++  EEE+  R+ E 
Subjt:  KEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAWMEAMELKKKKMAEEEEEEQQRRALEEESTPRQAEN

Query:  ENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFTDYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFH
        E +   E  WE  +       + +    +++   V K   + E  LE+      NP PP                    D+         E+D+++CPF+
Subjt:  ENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFTDYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFH

Query:  LKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGL
         KTGACRFG RCSR H +P  S TLLIK M+   G+
Subjt:  LKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGL

Q6YVX9 Zinc finger CCCH domain-containing protein 164.2e-4145.75Show/hide
Query:  RKEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAWMEAMELKKKKMAEEEEEEQQRRALEEESTPRQAE
        RKE+R+  KK +R++ R+E A    +  EA   DPEE+RR++ +E  E + SER R+ FE+ ER W+EA   +  + A    EE    A E+ S   + +
Subjt:  RKEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAWMEAMELKKKKMAEEEEEEQQRRALEEESTPRQAE

Query:  NENEFNEEDGWEYIE-GPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFTDYKNTPISTRQVIEDVASQVPNFGTEQDKSHCP
        + N   E+D WEY+E GPAEIIW+G EI +KKK++KVPKK  E                           N PI                  +QDK+HCP
Subjt:  NENEFNEEDGWEYIE-GPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFTDYKNTPISTRQVIEDVASQVPNFGTEQDKSHCP

Query:  FHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE
        FHLKTGACRFG RCSR+HFYPDKSCTLL++NMY+GPGLA EQDEGLE
Subjt:  FHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE

Q9SY74 Zinc finger CCCH domain-containing protein 51.3e-6957.95Show/hide
Query:  GEEEEEEEEEEEVKPCSVDNLCRKEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAWMEAMELKKKKMA
        GE+E  EE +E+    S     RKEKRKA+KK+KRKQ+RKE+A K  +E +A+LNDP EQ R++ +E E+  R E+E K FEE ERAW EAME+K+KK  
Subjt:  GEEEEEEEEEEEVKPCSVDNLCRKEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAWMEAMELKKKKMA

Query:  EE----EEEEQQRRALEEESTPRQAENENEFNEEDG-WEYI-EGPAEIIWKGEEIILKKKLIKVPKKGV---------EPEKSLEDAHRPTSNPLPPQSE
        EE    EEEE++ + LEE      + N+    +EDG +EYI EGP EII++G EIILKK  ++VPKK V           E  L+ + RPTSNPLPP SE
Subjt:  EE----EEEEQQRRALEEESTPRQAENENEFNEEDG-WEYI-EGPAEIIWKGEEIILKKKLIKVPKKGV---------EPEKSLEDAHRPTSNPLPPQSE

Query:  AFTDYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE
        A  +Y+N   S +Q++E VA +VPNFGTEQDK+HCPFHLKTGACRFGQRCSR+HFYP+KSCTLL+KNMYNGPG+ WEQDEGLE
Subjt:  AFTDYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE

Arabidopsis top hitse value%identityAlignment
AT1G10320.1 Zinc finger C-x8-C-x5-C-x3-H type family protein9.0e-7157.95Show/hide
Query:  GEEEEEEEEEEEVKPCSVDNLCRKEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAWMEAMELKKKKMA
        GE+E  EE +E+    S     RKEKRKA+KK+KRKQ+RKE+A K  +E +A+LNDP EQ R++ +E E+  R E+E K FEE ERAW EAME+K+KK  
Subjt:  GEEEEEEEEEEEVKPCSVDNLCRKEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAWMEAMELKKKKMA

Query:  EE----EEEEQQRRALEEESTPRQAENENEFNEEDG-WEYI-EGPAEIIWKGEEIILKKKLIKVPKKGV---------EPEKSLEDAHRPTSNPLPPQSE
        EE    EEEE++ + LEE      + N+    +EDG +EYI EGP EII++G EIILKK  ++VPKK V           E  L+ + RPTSNPLPP SE
Subjt:  EE----EEEEQQRRALEEESTPRQAENENEFNEEDG-WEYI-EGPAEIIWKGEEIILKKKLIKVPKKGV---------EPEKSLEDAHRPTSNPLPPQSE

Query:  AFTDYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE
        A  +Y+N   S +Q++E VA +VPNFGTEQDK+HCPFHLKTGACRFGQRCSR+HFYP+KSCTLL+KNMYNGPG+ WEQDEGLE
Subjt:  AFTDYKNTPISTRQVIEDVASQVPNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLE

AT1G27650.1 U2 snRNP auxiliary factor small subunit, putative1.6e-1157.14Show/hide
Query:  FGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGL
        FGTE+D+ +CPF+ K GACR G RCSR+H  P  S TLL+ NMY  P +
Subjt:  FGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGL

AT5G42820.1 Zinc finger C-x8-C-x5-C-x3-H type family protein1.6e-1157.14Show/hide
Query:  FGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGL
        FGTE+D+ +CPF+ K GACR G RCSR+H  P  S TLL+ NMY  P +
Subjt:  FGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGL

AT5G42820.2 Zinc finger C-x8-C-x5-C-x3-H type family protein1.6e-1157.14Show/hide
Query:  FGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGL
        FGTE+D+ +CPF+ K GACR G RCSR+H  P  S TLL+ NMY  P +
Subjt:  FGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGAACCTAAACTCATAGGAGGAGGAGGAGGAGGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTTAAGCCATGTTCGGTGGATAATCTATGCAGGAAGGA
GAAGAGGAAAGCGTTGAAGAAGATTAAACGGAAGCAATTAAGAAAAGAGTTGGCGCTAAAAAGGCTACAGGAAGAGGAGGCTCGGTTGAACGACCCTGAAGAGCAGAGGA
GGGTTCAGTTGATGGAGTTGGAGGAGGAGGAGAGGTCGGAGAGGGAGAGGAAGCTCTTTGAGGAGCGTGAAAGGGCGTGGATGGAAGCTATGGAGTTGAAGAAGAAGAAG
ATGGCTGAGGAGGAAGAAGAAGAGCAGCAAAGGAGAGCGCTGGAAGAAGAATCGACGCCGCGCCAGGCTGAAAATGAAAATGAGTTTAATGAGGAAGATGGTTGGGAATA
CATAGAAGGGCCTGCAGAAATAATTTGGAAAGGAGAAGAGATAATTTTGAAGAAGAAACTAATTAAGGTTCCTAAGAAGGGTGTTGAACCGGAGAAAAGCCTTGAGGATG
CTCATAGACCTACATCAAATCCTCTTCCTCCACAATCTGAAGCTTTTACAGATTATAAGAATACTCCAATTTCAACTAGACAAGTGATTGAGGATGTTGCAAGCCAAGTG
CCAAACTTTGGAACTGAACAGGATAAATCACATTGCCCGTTCCATCTTAAAACTGGAGCTTGTCGATTTGGTCAACGTTGTAGCAGAATTCACTTCTACCCTGACAAATC
GTGTACATTGCTTATCAAGAACATGTATAATGGTCCAGGCCTTGCTTGGGAGCAAGACGAGGGGCTGGAGGTCTGTTAA
mRNA sequenceShow/hide mRNA sequence
CTTAAATTAGTTATTTTGGACAATTTTCTTATCTTCAACCAGAGACAACACTGATTTACACTTTTTTTTATCCAAGGGTGAAAATTCTTAGAAATAACACTCCCAAGTTT
TCACTTTTAAAAACTAGGACACTTTTTAAAACTTCCTTATACTAGTTTTTCTCTTTAAATCGAGAGAAACCGAACCTAGAGGGAAATATACTCAGGCATGCAAAAAAAAT
CCATCTAGCTTTGGTTCTAGGTGATGGATGATCCATCCATTTGCAAGTACCATTAAACAAAATAACCTTTTTCCTCTCTCAATCTCTTTTGGTCTTGTTCACGTTTATTC
ATACAAATTTACCTTGAATGAGCGGCTAGAACTTGGTAGGAAGATCAATGTTTACCCTAACTTATTTCTCCACAGCACAAATCTGAATCCACCGTCACTCATTCATTAAT
TTCATTTGATGTTGTATAATTTTGCATGAATCAAAATTCACGATTCGGTAAGCTTGTATGTATAAATCCACCGAGATGTACCATAAGATCCAAACAAACAATCAATAAGT
TAGAAAAGAAGTGAAGTATTTGAACGAGTTTTAATTTTGTGAGACCAAAACGTCACCGAAGCTATTTCCCACCCAAGAGTTCCCATTAATTGCACCAAAACAAAAGTGTT
TCGAATTTTTTCTTCACCATCGACGCAGGAGGGTCGTCTCAACGGAGACTGCTGATAAATTGGAAGTTCCATCAACAAACACCCAATCAACACGACACCGCGATTGAATC
CCTTCGAGGCGCCCTTTCGTTACTCTGCTTTGATTTAGAGCTCCATTTTGTGAGCCTAATGGAGGAACCTAAACTCATAGGAGGAGGAGGAGGAGGAGAAGAAGAAGAAG
AAGAAGAAGAAGAAGAAGAAGTTAAGCCATGTTCGGTGGATAATCTATGCAGGAAGGAGAAGAGGAAAGCGTTGAAGAAGATTAAACGGAAGCAATTAAGAAAAGAGTTG
GCGCTAAAAAGGCTACAGGAAGAGGAGGCTCGGTTGAACGACCCTGAAGAGCAGAGGAGGGTTCAGTTGATGGAGTTGGAGGAGGAGGAGAGGTCGGAGAGGGAGAGGAA
GCTCTTTGAGGAGCGTGAAAGGGCGTGGATGGAAGCTATGGAGTTGAAGAAGAAGAAGATGGCTGAGGAGGAAGAAGAAGAGCAGCAAAGGAGAGCGCTGGAAGAAGAAT
CGACGCCGCGCCAGGCTGAAAATGAAAATGAGTTTAATGAGGAAGATGGTTGGGAATACATAGAAGGGCCTGCAGAAATAATTTGGAAAGGAGAAGAGATAATTTTGAAG
AAGAAACTAATTAAGGTTCCTAAGAAGGGTGTTGAACCGGAGAAAAGCCTTGAGGATGCTCATAGACCTACATCAAATCCTCTTCCTCCACAATCTGAAGCTTTTACAGA
TTATAAGAATACTCCAATTTCAACTAGACAAGTGATTGAGGATGTTGCAAGCCAAGTGCCAAACTTTGGAACTGAACAGGATAAATCACATTGCCCGTTCCATCTTAAAA
CTGGAGCTTGTCGATTTGGTCAACGTTGTAGCAGAATTCACTTCTACCCTGACAAATCGTGTACATTGCTTATCAAGAACATGTATAATGGTCCAGGCCTTGCTTGGGAG
CAAGACGAGGGGCTGGAGGTCTGTTAATGATGCTCATACAATTATTGGACTTACTGCAAGAATTGTGTCAAATTGTCATGGAGGGTTACAGTCTTGCTCTTGAGTCCCTT
TGGAGTTGATAATACGAAAACAAATTTTACTTCACTAAGCTCAGGTAGTGGGACACCATAATTATGACCTATTTGGAGTGATCATGGATGGCACCTGGATTTGACATAGC
ATGTTTCATTTGGAGTTGTAGGGGGTTCTGAAATGGAAATTGATGGACTAAGATTCACTTTTTCCCCTTTCAATTATCTAATTCGAATTTCTTATGGTGAAATGCATTCT
AGATTGACTTTCCTATACCTTTTTTCAGTTTACAGATGAGGAAGTTGAACGCTGCTATGAAGAGTTTTATGACGATGTGCATACTGAGTTTTTGAAGTACGGGGAAATTG
TTAATTTCAAGGTGTGTAAAAATGGTTCTTTTCACTTAAGAGGGAACCTTTACGTGCACTATAAGTCAGTGGATTCAGCTGTGCTTGCTTATAATGCCAACAATGGCCGT
TTCTATGCAGGGAAACAGATAATATGTGAATTCATAAATGTTACTAGATGGAAGAT
Protein sequenceShow/hide protein sequence
MEEPKLIGGGGGGEEEEEEEEEEEVKPCSVDNLCRKEKRKALKKIKRKQLRKELALKRLQEEEARLNDPEEQRRVQLMELEEEERSERERKLFEERERAWMEAMELKKKK
MAEEEEEEQQRRALEEESTPRQAENENEFNEEDGWEYIEGPAEIIWKGEEIILKKKLIKVPKKGVEPEKSLEDAHRPTSNPLPPQSEAFTDYKNTPISTRQVIEDVASQV
PNFGTEQDKSHCPFHLKTGACRFGQRCSRIHFYPDKSCTLLIKNMYNGPGLAWEQDEGLEVC