| GenBank top hits | e value | %identity | Alignment |
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| KAB1210584.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Morella rubra] | 4.2e-81 | 71.5 | Show/hide |
Query: MYITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSI
MY+T TRPDI MH VS+I+RYM+ PT++HL AAKRI RYLQGTK++GLF+K S VGFT+SDYAGD DDRK+TSGYVFML G +SWSSKKQ I
Subjt: MYITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSI
Query: FTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKL
TLSTTEAEF+AAT+ CQAIWLKKILEELQFK++G IYCDNSS IKLSKNPVLHGRSKH+DVK+HFLRDLT DG I++ YC+SEDQIA+I+TKPLK
Subjt: FTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKL
Query: SMFQKFRKLMGVAH
FQK R+L+GV +
Subjt: SMFQKFRKLMGVAH
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| KAF7132250.1 hypothetical protein RHSIM_Rhsim09G0033700 [Rhododendron simsii] | 5.8e-83 | 74.06 | Show/hide |
Query: MYITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSI
MY+T TRPDI M+ VSLI+RYM+NPT++HL AKRIFRYLQGT +GLFYK +S GFTDSDYAGD DDR++TSGYVFML GA+SWSSKKQ I
Subjt: MYITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSI
Query: FTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKL
TLSTTEAEF+AATS VCQAIWLKKILEEL FK++G+I I+CDNSS IKLSKNPVLHGRSKH+DVKFHFLRD TKDGTID+ +CKSEDQ+A+IMTKPLKL
Subjt: FTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKL
Query: SMFQKFRKLMGV
MF K + L+G+
Subjt: SMFQKFRKLMGV
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| KAF7147957.1 hypothetical protein RHSIM_Rhsim03G0172600 [Rhododendron simsii] | 2.0e-83 | 72.81 | Show/hide |
Query: MYITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSI
MY+T TRPDI M+ VSLI+RYM+NPT++HL AKRIFRYLQGT +GLFYK +S GFTDSDYAGD DDR++TSGYVFML GA+SWSSKKQ I
Subjt: MYITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSI
Query: FTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKL
TLSTTEAEF+AATS VCQAIWLKKILEEL FK++G+I I+CDNSS IKLSKNPVLHGRSKH+DVKFHFLRD TKDGTID+ +CKSEDQ+A+IMTKPLKL
Subjt: FTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKL
Query: SMFQKFRKLMGVAHWMN
MF K + L+G+ N
Subjt: SMFQKFRKLMGVAHWMN
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| KAF7150925.1 hypothetical protein RHSIM_Rhsim02G0113200 [Rhododendron simsii] | 2.0e-83 | 72.81 | Show/hide |
Query: MYITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSI
MY+T TRPDI M+ VSLI+RYM+NPT++HL AKRIFRYLQGT +GLFYK +S GFTDSDYAGD DDR++TSGYVFML GA+SWSSKKQ I
Subjt: MYITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSI
Query: FTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKL
TLSTTEAEF+AATS VCQAIWLKKILEEL FK++G+I I+CDNSS IKLSKNPVLHGRSKH+DVKFHFLRD TKDGTID+ +CKSEDQ+A+IMTKPLKL
Subjt: FTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKL
Query: SMFQKFRKLMGVAHWMN
MF K + L+G+ N
Subjt: SMFQKFRKLMGVAHWMN
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| KAF7154611.1 hypothetical protein RHSIM_Rhsim01G0080600 [Rhododendron simsii] | 3.1e-84 | 74.19 | Show/hide |
Query: MYITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSI
MY+T TRPDI M+ VSLI RYM+NPT++HL AKRIFRYLQGT +GLFYKN +S GFTDSDYAGD DDR++TSGYVFML GA+SWSSKKQ I
Subjt: MYITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSI
Query: FTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKL
TLSTTEAEF+AATS VCQAIWLKKILEEL FK++G+I I+CDNSS IKLSKNPVLHGRSKH+DVKFHFLRD TKDGTID+ +CKSEDQ+A+IMTKPLKL
Subjt: FTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKL
Query: SMFQKFRKLMGVAHWMN
MF K R L+GV N
Subjt: SMFQKFRKLMGVAHWMN
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A438I5N6 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.4e-79 | 69.48 | Show/hide |
Query: MYITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSI
MY+T TRPDI MH VSLI+RYM+NPT++H AAK+I RYLQGTKD+GLFYK +S +GFTDSDYAGD D+R++TSGYVFML GA+SWSSKKQ I
Subjt: MYITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSI
Query: FTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKL
TLSTTEAEF+AAT+ CQAIWL+KILEEL KQ G+ I+CDNSS IKLSKNPVLHGRSKH+DVK++FLR+L+ DG ID+ YC+SE+Q+A+I TKPLKL
Subjt: FTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKL
Query: SMFQKFRKLMGVA
+ F K RKL+GV+
Subjt: SMFQKFRKLMGVA
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| A0A5A7V287 Integrase, catalytic core | 8.5e-80 | 100 | Show/hide |
Query: DYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKF
DYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKF
Subjt: DYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKF
Query: HFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKLSMFQKFRKLMGVAHWMNL
HFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKLSMFQKFRKLMGVAHWMNL
Subjt: HFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKLSMFQKFRKLMGVAHWMNL
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| A0A5B7B1Y6 Reverse transcriptase Ty1/copia-type domain-containing protein | 2.2e-80 | 72.17 | Show/hide |
Query: MYITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSI
MY+T TRPDI MH VS+I+RYM+ PT++HL AAKRIFRYL+GTK++ LFYKN KS GFTDSDYAGD DDRK+TS YVFM+ GAISWSSKKQ I
Subjt: MYITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSI
Query: FTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKL
TLS+TEAEF+AAT+ CQAIWLKKIL+EL FK++G IYCDNSS IKLSKNPVLHGRSKH+DVK+HFLRDLT DG I++ YC+SEDQIA+I+TKPLK
Subjt: FTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKL
Query: SMFQKFRKLMGV
FQK RKL+GV
Subjt: SMFQKFRKLMGV
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| A0A5D3BSY4 Integrase, catalytic core | 8.5e-80 | 100 | Show/hide |
Query: DYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKF
DYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKF
Subjt: DYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKF
Query: HFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKLSMFQKFRKLMGVAHWMNL
HFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKLSMFQKFRKLMGVAHWMNL
Subjt: HFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKLSMFQKFRKLMGVAHWMNL
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| A0A6A1VCV3 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.0e-81 | 71.5 | Show/hide |
Query: MYITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSI
MY+T TRPDI MH VS+I+RYM+ PT++HL AAKRI RYLQGTK++GLF+K S VGFT+SDYAGD DDRK+TSGYVFML G +SWSSKKQ I
Subjt: MYITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSI
Query: FTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKL
TLSTTEAEF+AAT+ CQAIWLKKILEELQFK++G IYCDNSS IKLSKNPVLHGRSKH+DVK+HFLRDLT DG I++ YC+SEDQIA+I+TKPLK
Subjt: FTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKL
Query: SMFQKFRKLMGVAH
FQK R+L+GV +
Subjt: SMFQKFRKLMGVAH
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 2.3e-34 | 37.96 | Show/hide |
Query: MYI-TTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKN--VVKSYFVGFTDSDYAGDIDDRKNTSGYVF-MLSLGAISWSSK
MYI TRPD+ V++++RY KR+ RYL+GT D L +K ++ +G+ DSD+AG DRK+T+GY+F M I W++K
Subjt: MYI-TTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKN--VVKSYFVGFTDSDYAGDIDDRKNTSGYVF-MLSLGAISWSSK
Query: KQSIFTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTK
+Q+ S+TEAE++A V +A+WLK +L + K E I IY DN I ++ NP H R+KH+D+K+HF R+ ++ I + Y +E+Q+A+I TK
Subjt: KQSIFTLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTK
Query: PLKLSMFQKFRKLMGV
PL + F + R +G+
Subjt: PLKLSMFQKFRKLMGV
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| P0CV72 Secreted RxLR effector protein 161 | 9.5e-20 | 40.32 | Show/hide |
Query: MYI-TTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQS
MY+ TRPD+ V +++++ +P H A KR+ RYLQ T+ YGL + + VG++D+D+AGD++ R++TSGY+F L+ G +SW SKKQ
Subjt: MYI-TTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQS
Query: IFTLSTTEAEFIAATSYVCQAIWL
LS+TE E++A + +A+WL
Subjt: IFTLSTTEAEFIAATSYVCQAIWL
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.4e-39 | 42.51 | Show/hide |
Query: TRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLST
TRPDI H V +++R+++NP K H A K I RYL+GT L + G+TD+D AGDID+RK+++GY+F S GAISW SK Q LST
Subjt: TRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIFTLST
Query: TEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKLSMFQK
TEAE+IAAT + IWLK+ L+EL Q+ +YCD+ S I LSKN + H R+KH+DV++H++R++ D ++ V + + A+++TK + + F+
Subjt: TEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKLSMFQK
Query: FRKLMGV
++L+G+
Subjt: FRKLMGV
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 8.5e-37 | 38.86 | Show/hide |
Query: YITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIF
Y+ TRPDI + V+ ++++M PT+ HL A KRI RYL GT ++G+F K ++D+D+AGD DD +T+GY+ L ISWSSKKQ
Subjt: YITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIF
Query: TLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKLS
S+TEAE+ + + + W+ +L EL + IYCDN L NPV H R KH+ + +HF+R+ + G + V + + DQ+A+ +TKPL +
Subjt: TLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKLS
Query: MFQKFRKLMGV
FQ F +GV
Subjt: MFQKFRKLMGV
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 2.5e-36 | 38.39 | Show/hide |
Query: YITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIF
Y+ TRPD+ + V+ +++YM PT H A KR+ RYL GT D+G+F K ++D+D+AGD DD +T+GY+ L ISWSSKKQ
Subjt: YITTTRPDIMHFVMHFVSLINRYMKNPTKMHLFAAKRIFRYLQGTKDYGLFYKNVVKSYFVGFTDSDYAGDIDDRKNTSGYVFMLSLGAISWSSKKQSIF
Query: TLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKLS
S+TEAE+ + + + W+ +L EL + IYCDN L NPV H R KH+ + +HF+R+ + G + V + + DQ+A+ +TKPL
Subjt: TLSTTEAEFIAATSYVCQAIWLKKILEELQFKQEGSIAIYCDNSSVIKLSKNPVLHGRSKHMDVKFHFLRDLTKDGTIDVFYCKSEDQIANIMTKPLKLS
Query: MFQKFRKLMGV
FQ F + +GV
Subjt: MFQKFRKLMGV
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