CuGenDBv2

Gene ID	Cmc06g0170831
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Genome location	CMiso1.1chr06:26323575..26324306
RNA-Seq Expression	Cmc06g0170831
Synteny	Cmc06g0170831
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

CAN66208.1 hypothetical protein VITISV_035070 [Vitis vinifera]

5.2e-101

74.8

Show/hide

Query:  MHLMNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPCGTI---GVGHAIIAVYVDDL
        M LM+V+TTYLY S++N+IYMKIPEGF++P++ N+  R + SIKLQRSLYGLKQS RMWYNRLS+YLLKEGY NNPICPC  I     G AIIAVYVDDL
Subjt:  MHLMNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPCGTI---GVGHAIIAVYVDDL

Query:  NIIGSPEELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPYL
        N++G+PEEL++   YLKK+FEMKDLGKTKFCLGLQIEH  + + +HQSTY +K+LKRFYMDKAHPL+ PMVVRSLDV KKD FRP E +EELLGPEVPYL
Subjt:  NIIGSPEELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPYL

Query:  SAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL
        SAIGALMYLAN TRPDI  SVNLLARYSS+PT+RHWNG+KH+LRYL
Subjt:  SAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL

RVW51051.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

2.3e-101

74.8

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Query:  MHLMNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPC---GTIGVGHAIIAVYVDDL
        M LM+V+T YLY S++N+IYMKIPEGFK+P++ N+  R + SIKLQRSLYGLKQS RMWYNRLS+YLLKEGY NNPICPC     +  G AIIAVYVDDL
Subjt:  MHLMNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPC---GTIGVGHAIIAVYVDDL

Query:  NIIGSPEELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPYL
        N++G+PEEL++   YLKK+FEMKDLGKTKFCLGLQIEH  + + +HQSTY +K+LKRFYMDKAHPL+ PMVVRSLDV KKD FRP E +EELLGPEVPYL
Subjt:  NIIGSPEELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPYL

Query:  SAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL
        SAIGALMYLAN TRPDI  SVNLLARYSSSPT+RHWNG+KH+LRYL
Subjt:  SAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL

RVW59049.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

6.7e-101

74.8

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Query:  MHLMNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPCGTI---GVGHAIIAVYVDDL
        M LM+V+T YLY S++N+IYMKIPEGFK+P++ N+  R + SIKLQRSLYGLKQS RMWYNRLS+YLLKEGY NNPICPC  I     G AIIAVYVDDL
Subjt:  MHLMNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPCGTI---GVGHAIIAVYVDDL

Query:  NIIGSPEELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPYL
        N++G+PEEL++   YLKK+FEMKDLGKTKFCLGLQIEH  + + +HQSTY +K+LKRFYMDKAHPL+ PMVVRSLDV KKD FRP E +EELLGPEVPYL
Subjt:  NIIGSPEELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPYL

Query:  SAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL
        SAIGALMYLAN TRPDI  SVNLLARYSS+PT+RHWNG+KH+LRYL
Subjt:  SAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL

RVW93168.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

3.0e-101

75.2

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Query:  MHLMNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPCGTI---GVGHAIIAVYVDDL
        M LM+V+T YLY S++N+IYMKIPEGFK+P++ N+  R + SIKLQRSLYGLKQS RMWYNRLS+YLLKEGY NNPICPC  I     G AIIAVYVDDL
Subjt:  MHLMNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPCGTI---GVGHAIIAVYVDDL

Query:  NIIGSPEELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPYL
        N++G+PEEL++   YLKK+FEMKDLGKTKFCLGLQIEH  + + +HQSTY +K+LKRFYMDKAHPL+ PMVVRSLDV KKD FRP E +EELLGPEVPYL
Subjt:  NIIGSPEELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPYL

Query:  SAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL
        SAIGALMYLAN TRPDI  SVNLLARYSSSPT+RHWNG+KH+LRYL
Subjt:  SAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL

RVW94544.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]

6.7e-101

75.2

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Query:  MHLMNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPCGTI---GVGHAIIAVYVDDL
        M LM+V+TTYLY S++N+IYMKIPEGFK+P++ N+  R + SIKLQRSLYGLKQS RMWYNRLS+YLLKEGY NNPICPC  I     G AIIAVYVDDL
Subjt:  MHLMNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPCGTI---GVGHAIIAVYVDDL

Query:  NIIGSPEELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPYL
        N++G+PEEL++   YLKK+FEMKDLGKTKFCLGLQIEH  + + +HQSTY +K+LKRFYMDKAHPL+  MVVRSLDV KKD FRP E +EELLGPEVPYL
Subjt:  NIIGSPEELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPYL

Query:  SAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL
        SAIGALMYLAN TRPDI  SVNLLARYSSSPT+RHWNG+KH+LRYL
Subjt:  SAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL

TrEMBL top hits

e value

%identity

Alignment

A0A2N9G6F8 Reverse transcriptase Ty1/copia-type domain-containing protein

7.0e-104

78.05

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Query:  MHLMNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPCGTI---GVGHAIIAVYVDDL
        M LM+VVT YLY SL+N+IYMKIPEG+K+PE+YNS SR + SIKLQRSLYGLKQS RMWYNRLS+YLLKEG++NNPICPC  I     G AI+AVYVDDL
Subjt:  MHLMNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPCGTI---GVGHAIIAVYVDDL

Query:  NIIGSPEELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPYL
        N++G+PEEL+K  +YLK +FEMKDLGKTKFCLGLQIEHL D I IHQSTYTEK+LK F+MDKAHPL+ PMVVRSLDV KKD FRP+E  EE LGPEVPYL
Subjt:  NIIGSPEELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPYL

Query:  SAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL
        SAIGALMYLAN TRPDI  SVNLLARYSS+PT RHWNGVKHVLRYL
Subjt:  SAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL

A0A2N9G9W6 Reverse transcriptase Ty1/copia-type domain-containing protein

7.0e-104

78.05

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Query:  MHLMNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPCGTI---GVGHAIIAVYVDDL
        M LM+VVT YLY SL+N+IYMKIPEG+K+PE+YNS SR + SIKLQRSLYGLKQS RMWYNRLS+YLLKEG++NNPICPC  I     G AI+AVYVDDL
Subjt:  MHLMNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPCGTI---GVGHAIIAVYVDDL

Query:  NIIGSPEELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPYL
        N++G+PEEL+K  +YLK +FEMKDLGKTKFCLGLQIEHL D I IHQSTYTEK+LK F+MDKAHPL+ PMVVRSLDV KKD FRP+E  EE LGPEVPYL
Subjt:  NIIGSPEELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPYL

Query:  SAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL
        SAIGALMYLAN TRPDI  SVNLLARYSS+PT RHWNGVKHVLRYL
Subjt:  SAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL

A0A2N9GX57 Reverse transcriptase Ty1/copia-type domain-containing protein

7.0e-104

78.05

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Query:  MHLMNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPCGTI---GVGHAIIAVYVDDL
        M LM+VVT YLY SL+N+IYMKIPEG+K+PE+YNS SR + SIKLQRSLYGLKQS RMWYNRLS+YLLKEG++NNPICPC  I     G AI+AVYVDDL
Subjt:  MHLMNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPCGTI---GVGHAIIAVYVDDL

Query:  NIIGSPEELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPYL
        N++G+PEEL+K  +YLK +FEMKDLGKTKFCLGLQIEHL D I IHQSTYTEK+LK F+MDKAHPL+ PMVVRSLDV KKD FRP+E  EE LGPEVPYL
Subjt:  NIIGSPEELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPYL

Query:  SAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL
        SAIGALMYLAN TRPDI  SVNLLARYSS+PT RHWNGVKHVLRYL
Subjt:  SAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL

A0A2N9HZE8 Reverse transcriptase Ty1/copia-type domain-containing protein

7.0e-104

78.05

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Query:  MHLMNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPCGTI---GVGHAIIAVYVDDL
        M LM+VVT YLY SL+N+IYMKIPEG+K+PE+YNS SR + SIKLQRSLYGLKQS RMWYNRLS+YLLKEG++NNPICPC  I     G AI+AVYVDDL
Subjt:  MHLMNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPCGTI---GVGHAIIAVYVDDL

Query:  NIIGSPEELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPYL
        N++G+PEEL+K  +YLK +FEMKDLGKTKFCLGLQIEHL D I IHQSTYTEK+LK F+MDKAHPL+ PMVVRSLDV KKD FRP+E  EE LGPEVPYL
Subjt:  NIIGSPEELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPYL

Query:  SAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL
        SAIGALMYLAN TRPDI  SVNLLARYSS+PT RHWNGVKHVLRYL
Subjt:  SAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL

A0A2N9I5S5 Reverse transcriptase Ty1/copia-type domain-containing protein

7.0e-104

78.05

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Query:  MHLMNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPCGTI---GVGHAIIAVYVDDL
        M LM+VVT YLY SL+N+IYMKIPEG+K+PE+YNS SR + SIKLQRSLYGLKQS RMWYNRLS+YLLKEG++NNPICPC  I     G AI+AVYVDDL
Subjt:  MHLMNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPCGTI---GVGHAIIAVYVDDL

Query:  NIIGSPEELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPYL
        N++G+PEEL+K  +YLK +FEMKDLGKTKFCLGLQIEHL D I IHQSTYTEK+LK F+MDKAHPL+ PMVVRSLDV KKD FRP+E  EE LGPEVPYL
Subjt:  NIIGSPEELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPYL

Query:  SAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL
        SAIGALMYLAN TRPDI  SVNLLARYSS+PT RHWNGVKHVLRYL
Subjt:  SAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

3.1e-32

34.65

Show/hide

Query:  MHLMNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPC------GTIGVGHAIIAVYV
        +H M+V T +L  +L+ EIYM++P+G       + NS  +C  KL +++YGLKQ+ R W+    + L +  + N+ +  C      G I   +  + +YV
Subjt:  MHLMNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPC------GTIGVGHAIIAVYV

Query:  DDLNI-IGSPEELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPE
        DD+ I  G    ++    YL +KF M DL + K  +G++IE   D+I++ QS Y +KIL +F M+  + ++ P+              P + N ELL  +
Subjt:  DDLNI-IGSPEELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPE

Query:  ----VPYLSAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL
             P  S IG LMY+   TRPD+T++VN+L+RYSS      W  +K VLRYL
Subjt:  ----VPYLSAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

1.1e-34

36.84

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Query:  MNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPCGTI----GVGHAIIAVYVDDLNI
        ++V T +L+  LE EIYM+ PEGF++          +C  KL +SLYGLKQ+ R WY +   ++  + Y      PC            I+ +YVDD+ I
Subjt:  MNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPCGTI----GVGHAIIAVYVDDLNI

Query:  IGSPEEL-SKAIEYLKKKFEMKDLGKTKFCLGLQI--EHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPY
        +G  + L +K    L K F+MKDLG  +  LG++I  E  + ++++ Q  Y E++L+RF M  A P++ P+    L + KK    P    E+    +VPY
Subjt:  IGSPEEL-SKAIEYLKKKFEMKDLGKTKFCLGLQI--EHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPY

Query:  LSAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL
         SA+G+LMY    TRPDI  +V +++R+  +P K HW  VK +LRYL
Subjt:  LSAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL

P25600 Putative transposon Ty5-1 protein YCL074W

7.4e-18

32.02

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Query:  MNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSI-KLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPCGTIGV-------GHAIIAVYVD
        M+V T +L  +++  IY+K P GF        N R    + +L   +YGLKQ+  +W   ++  L K G+  +     G  G+       G   IAVYVD
Subjt:  MNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSI-KLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPCGTIGV-------GHAIIAVYVD

Query:  DLNIIG-SPEELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILK-RFYMDKA---HPLNIPMVVRSLDVKKKDIFRPREDNEELL
        DL +   SP+   +  + L K + MKDLGK    LGL          IHQS+  +  L  + Y+ KA     +N   + ++     K +F   E     L
Subjt:  DLNIIG-SPEELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILK-RFYMDKA---HPLNIPMVVRSLDVKKKDIFRPREDNEELL

Query:  GPEVPYLSAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL
            PY S +G L++ AN  RPDI+  V+LL+R+   P   H    + VLRYL
Subjt:  GPEVPYLSAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL

Q03855 Transposon Ty1-DR1 Gag-Pol polyprotein

2.6e-10

25.21

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Query:  MNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKE-GYQNNPICPCGTIGVGHAIIAVYVDDLNIIGS
        +++ + YLY  ++ E+Y++ P    + +           I+L++SLYGLKQS   WY  +  YL+K+ G +      C         I ++VDD+ +   
Subjt:  MNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKE-GYQNNPICPCGTIGVGHAIIAVYVDDLNIIGS

Query:  PEELS-KAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPRE-----DNEELLGPEVPY
            + K I  LKK+++ K +   +    +Q + L  EI   +S Y +  +++   +K   LN+P     L+ K K +  P +     D +EL   E  Y
Subjt:  PEELS-KAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPRE-----DNEELLGPEVPY

Query:  -------LSAIGALMYLANNTRPDITSSVNLLARYSSSPTKR
                  IG   Y+    R D+   +N LA++   P+++
Subjt:  -------LSAIGALMYLANNTRPDITSSVNLLARYSSSPTKR

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2

2.6e-23

31.97

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Query:  MNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNN-PICPCGTIGVGHAII--AVYVDDLNII
        ++V   +L  +L +E+YM  P GF          R     +L++++YGLKQ+ R WY  L  YLL  G+ N+        +  G +II   VYVDD+ I 
Subjt:  MNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNN-PICPCGTIGVGHAII--AVYVDDLNII

Query:  GSPEELSK-AIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPYLSA
        G+   L K  ++ L ++F +K+     + LG++ + +   + + Q  YT  +L R  M  A P+  PM             +    +   L     Y   
Subjt:  GSPEELSK-AIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPYLSA

Query:  IGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL
        +G+L YLA  TRPD++ +VN L++Y   PT  HWN +K VLRYL
Subjt:  IGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

1.8e-19

27.94

Show/hide

Query:  MHLMNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPCGTIGVGHAI---IAVYVDDL
        +H +++   +L   L+ EIYMK+P G+   +  +     +C +K  +S+YGLKQ+ R W+ + S  L+  G+  +       + +   +   + VYVDD+
Subjt:  MHLMNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPCGTIGVGHAI---IAVYVDDL

Query:  NIIGSPE-ELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPY
         I  + +  + +    LK  F+++DLG  K+ LGL+I   A  I I Q  Y   +L    +    P ++PM           +        + +  +  Y
Subjt:  NIIGSPE-ELSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPY

Query:  LSAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL
           IG LMYL   TR DI+ +VN L+++S +P   H   V  +L Y+
Subjt:  LSAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL

ATMG00810.1 DNA/RNA polymerases superfamily protein

1.9e-13

32.08

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Query:  IAVYVDDLNIIGSPEE-LSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEE
        + +YVDD+ + GS    L+  I  L   F MKDLG   + LG+QI+     +F+ Q+ Y E+IL    M    P++ P+              P + N  
Subjt:  IAVYVDDLNIIGSPEE-LSKAIEYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEE

Query:  LLGPEVP----YLSAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL
        +   + P    + S +GAL YL   TRPDI+ +VN++ +    PT   ++ +K VLRY+
Subjt:  LLGPEVP----YLSAIGALMYLANNTRPDITSSVNLLARYSSSPTKRHWNGVKHVLRYL

Sequences

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CDS sequence

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ATGCATCTTATGAATGTAGTTACAACATATTTATATAGATCTTTGGAAAATGAAATCTATATGAAAATCCCTGAAGGATTTAAGATACCTGAATCATATAATTCAAACTC
TAGAGAATTATGTTCAATCAAATTACAAAGATCATTATATGGATTGAAACAATCAGAACGAATGTGGTACAATCGCTTAAGTAAATATTTATTGAAAGAAGGTTATCAAA
ATAATCCAATTTGTCCATGTGGTACAATCGGAGTTGGCCATGCGATTATAGCTGTATATGTTGATGATTTAAATATAATTGGAAGTCCTGAAGAGCTTTCAAAGGCAATA
GAATATCTCAAAAAGAAATTTGAAATGAAAGATCTTGGTAAGACAAAATTTTGCCTTGGCTTACAAATAGAGCATTTAGCCGATGAAATTTTTATTCATCAATCAACATA
TACAGAAAAGATTTTAAAAAGATTCTACATGGACAAAGCACACCCATTGAACATTCCAATGGTGGTTCGATCACTAGATGTAAAAAAAAAAGATATCTTTCGACCTCGAG
AAGATAATGAAGAATTACTTGGTCCTGAAGTACCGTACCTTAGTGCAATAGGTGCACTAATGTATCTTGCTAATAACACAAGACCAGATATAACATCTTCAGTAAATTTG
TTAGCAAGATATAGTTCTTCACCAACAAAAAGACATTGGAATGGAGTTAAGCATGTACTTCGTTATCTTTGA

mRNA sequence

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Protein sequence

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MHLMNVVTTYLYRSLENEIYMKIPEGFKIPESYNSNSRELCSIKLQRSLYGLKQSERMWYNRLSKYLLKEGYQNNPICPCGTIGVGHAIIAVYVDDLNIIGSPEELSKAI
EYLKKKFEMKDLGKTKFCLGLQIEHLADEIFIHQSTYTEKILKRFYMDKAHPLNIPMVVRSLDVKKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDITSSVNL
LARYSSSPTKRHWNGVKHVLRYL

Cmc06g0170831 (gene) of Melon (Charmono) v1.1 genome