CuGenDBv2

Gene ID	Cmc06g0171981
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr06:27785793..27786155
RNA-Seq Expression	Cmc06g0171981
Synteny	Cmc06g0171981
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035531.1 uncharacterized protein E6C27_scaffold285G001970 [Cucumis melo var. makuwa]

2.9e-57

95.83

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Query:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW
        MPFGLTNAPATF TLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEH+DHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKI AIRDW
Subjt:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW

Query:  AVLKSVSELRSFLELANYYR
        AV KSVSELRSFL LANYYR
Subjt:  AVLKSVSELRSFLELANYYR

KAA0051481.1 reverse transcriptase [Cucumis melo var. makuwa]

3.8e-57

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Query:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW
        MPFGLTNAPATF TLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEH+DHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKI AIRDW
Subjt:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW

Query:  AVLKSVSELRSFLELANYYR
        A+ KSVSELRSFL LANYYR
Subjt:  AVLKSVSELRSFLELANYYR

KAA0059106.1 reverse transcriptase [Cucumis melo var. makuwa]

3.8e-57

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Query:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW
        MPFGLTNAPATF TLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEH+DHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKI AIRDW
Subjt:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW

Query:  AVLKSVSELRSFLELANYYR
        A+ KSVSELRSFL LANYYR
Subjt:  AVLKSVSELRSFLELANYYR

KAA0067557.1 reverse transcriptase [Cucumis melo var. makuwa]

6.6e-57

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Query:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW
        MPFGLTNAPATF TLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEH+DHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKI AIRDW
Subjt:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW

Query:  AVLKSVSELRSFLELANYYR
        A+ KSVSELRSFL LANYYR
Subjt:  AVLKSVSELRSFLELANYYR

TYK07955.1 reverse transcriptase [Cucumis melo var. makuwa]

1.3e-57

95.83

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Query:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW
        MPFGLTNAPATF TLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEH+DHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW
Subjt:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW

Query:  AVLKSVSELRSFLELANYYR
        A+ KSVSELRSFL LANYYR
Subjt:  AVLKSVSELRSFLELANYYR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7T1S6 Reverse transcriptase domain-containing protein

1.4e-57

95.83

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Query:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW
        MPFGLTNAPATF TLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEH+DHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKI AIRDW
Subjt:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW

Query:  AVLKSVSELRSFLELANYYR
        AV KSVSELRSFL LANYYR
Subjt:  AVLKSVSELRSFLELANYYR

A0A5A7UD54 Reverse transcriptase

1.9e-57

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Query:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW
        MPFGLTNAPATF TLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEH+DHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKI AIRDW
Subjt:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW

Query:  AVLKSVSELRSFLELANYYR
        A+ KSVSELRSFL LANYYR
Subjt:  AVLKSVSELRSFLELANYYR

A0A5A7UY33 Reverse transcriptase

1.9e-57

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Query:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW
        MPFGLTNAPATF TLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEH+DHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKI AIRDW
Subjt:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW

Query:  AVLKSVSELRSFLELANYYR
        A+ KSVSELRSFL LANYYR
Subjt:  AVLKSVSELRSFLELANYYR

A0A5D3C4R1 Reverse transcriptase

3.2e-57

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Query:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW
        MPFGLTNAPATF TLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEH+DHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKI AIRDW
Subjt:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW

Query:  AVLKSVSELRSFLELANYYR
        A+ KSVSELRSFL LANYYR
Subjt:  AVLKSVSELRSFLELANYYR

A0A5D3C8Z6 Reverse transcriptase

6.4e-58

95.83

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Query:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW
        MPFGLTNAPATF TLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEH+DHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW
Subjt:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW

Query:  AVLKSVSELRSFLELANYYR
        A+ KSVSELRSFL LANYYR
Subjt:  AVLKSVSELRSFLELANYYR

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

3.5e-21

43.33

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Query:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW
        MPFGL NAPATF   MN +    L+K  +VYLDDI+V+ST+++EH   L  VF+KL +  L ++ +KC F ++   FLGHV+    I     KI AI+ +
Subjt:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW

Query:  AVLKSVSELRSFLELANYYR
         +     E+++FL L  YYR
Subjt:  AVLKSVSELRSFLELANYYR

P20825 Retrovirus-related Pol polyprotein from transposon 297

2.7e-21

42.5

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Query:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW
        MPFGL NAPATF   MN +    L+K  +VYLDDI+++ST++ EH + +Q VF KL +  L ++ +KC F ++  NFLGH++    I     K+ AI  +
Subjt:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW

Query:  AVLKSVSELRSFLELANYYR
         +     E+R+FL L  YYR
Subjt:  AVLKSVSELRSFLELANYYR

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein

9.3e-22

45.83

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Query:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW
        MPFGL NAP+TF   M   F +   +FV VYLDDI+++S + EEH  HL  V ++LK   L VK++KC FA E   FLG+ I   +I   + K  AIRD+
Subjt:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW

Query:  AVLKSVSELRSFLELANYYR
           K+V + + FL + NYYR
Subjt:  AVLKSVSELRSFLELANYYR

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

5.8e-16

35.83

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Query:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW
        +PFGL NAPA F  +++ +  E++ K   VY+DDI+V+S   + H  +L+ V   L +  L V  EK  F   ++ FLG+++    I  +  K+ AI + 
Subjt:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW

Query:  AVLKSVSELRSFLELANYYR
            SV EL+ FL + +YYR
Subjt:  AVLKSVSELRSFLELANYYR

Q99315 Transposon Ty3-G Gag-Pol polyprotein

9.3e-22

45.83

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Query:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW
        MPFGL NAP+TF   M   F +   +FV VYLDDI+++S + EEH  HL  V ++LK   L VK++KC FA E   FLG+ I   +I   + K  AIRD+
Subjt:  MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDW

Query:  AVLKSVSELRSFLELANYYR
           K+V + + FL + NYYR
Subjt:  AVLKSVSELRSFLELANYYR

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGCCATTTGGTCTGACCAATGCCCCTGCAACCTTCTATACGTTGATGAACCAGGTCTTCCACGAATATCTCGACAAATTCGTAGTAGTCTACCTAGATGATATAGTGGT
CTATAGTACGACCATGGAGGAACATAAAGACCACCTGCAAAAGGTTTTTCAGAAATTGAAGGAGAATCAACTGTATGTCAAAAGAGAAAAATGTTCTTTTGCACAAGAGC
GGATAAACTTCTTGGGCCATGTGATAGAGTGTGGCCGAATTGGGATGGAAGAAGGGAAGATTGTTGCGATACGCGACTGGGCAGTGCTGAAATCAGTCTCGGAGTTACGC
TCCTTCCTCGAGTTGGCAAATTACTACCGTTGA

mRNA sequence

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Protein sequence

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MPFGLTNAPATFYTLMNQVFHEYLDKFVVVYLDDIVVYSTTMEEHKDHLQKVFQKLKENQLYVKREKCSFAQERINFLGHVIECGRIGMEEGKIVAIRDWAVLKSVSELR
SFLELANYYR

Cmc06g0171981 (gene) of Melon (Charmono) v1.1 genome