; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0172001 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0172001
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
Genome locationCMiso1.1chr06:27801529..27802041
RNA-Seq ExpressionCmc06g0172001
SyntenyCmc06g0172001
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046934.1 uncharacterized protein E6C27_scaffold230G001030 [Cucumis melo var. makuwa]6.0e-7296.55Show/hide
Query:  MFSRASNQAESEGIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAV
        MFSRASNQ ESEGIFISQEKYAKNIIKKF LEQSRHKRTPAATHVKITKDTDGARADH+LYRSIIGSLLYLTASRPDIAYAIGICARYQ+AP+MSHLKAV
Subjt:  MFSRASNQAESEGIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAV

Query:  KRILKYIHGINNFGILYSYDTASILVGYCDADWAGSSYDKKSTSR
        KRILKYIHGINNFGILYSYDTASILVGYCDADWAGSSYDKKSTSR
Subjt:  KRILKYIHGINNFGILYSYDTASILVGYCDADWAGSSYDKKSTSR

KAA0064116.1 putative mitochondrial protein [Cucumis melo var. makuwa]3.1e-6878.7Show/hide
Query:  MFSRASNQAESEGIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAV
        +F     + +SEGIFISQEKYAK+IIKKF LEQSRHKRTPAATHVKITKDT+GARA+HKLYRSIIGSLLYLTASRP+IAY +G CARYQ  P+ SHL+AV
Subjt:  MFSRASNQAESEGIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAV

Query:  KRILKYIHGINNFGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFSKKQNCVSLST
        KRILKY+H  ++FGI+YSYDT S LVGYCDADW GSS D+KST  GCFFL NNLISWFSKKQNCVSLST
Subjt:  KRILKYIHGINNFGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFSKKQNCVSLST

KAA0068014.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]1.5e-7083.85Show/hide
Query:  ESEGIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAVKRILKYIHG
        +SE IFISQEKY KNI+KKF LEQSRHKRTPA T VKITKDT+GARADHKLYRSII SLL+LTASRPDIAYA+GIC RYQ  PQMSHL+AVKRILKY+HG
Subjt:  ESEGIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAVKRILKYIHG

Query:  INNFGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFSKKQNCVSLSTT
         ++FGILYSYDT SILVGYCDADWAGS+ D+K+TS GCFFL NNLISWFSKKQNCVSLSTT
Subjt:  INNFGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFSKKQNCVSLSTT

TYK03217.1 uncharacterized protein E5676_scaffold298G00290 [Cucumis melo var. makuwa]5.1e-7195.86Show/hide
Query:  MFSRASNQAESEGIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAV
        MFSRASNQ ESEGIFISQEKYAKNIIKKF LEQS HKRTPAATHVKITKDTDGARADH+LYRSIIGSLLYLTASRPDIAYAIGICARYQ+AP+MSHLKAV
Subjt:  MFSRASNQAESEGIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAV

Query:  KRILKYIHGINNFGILYSYDTASILVGYCDADWAGSSYDKKSTSR
        KRILKYIHGINNFGILYSYDTASILVGYCDADWAGSSYDKKSTSR
Subjt:  KRILKYIHGINNFGILYSYDTASILVGYCDADWAGSSYDKKSTSR

TYK18114.1 putative gag-pol polyprotein [Cucumis melo var. makuwa]1.5e-7083.85Show/hide
Query:  ESEGIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAVKRILKYIHG
        +SE IFISQEKY KNI+KKF LEQSRHKRTPA T VKITKDT+GARADHKLYRSII SLL+LTASRPDIAYA+GIC RYQ  PQMSHL+AVKRILKY+HG
Subjt:  ESEGIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAVKRILKYIHG

Query:  INNFGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFSKKQNCVSLSTT
         ++FGILYSYDT SILVGYCDADWAGS+ D+K+TS GCFFL NNLISWFSKKQNCVSLSTT
Subjt:  INNFGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFSKKQNCVSLSTT

TrEMBL top hitse value%identityAlignment
A0A5A7TVE6 Integrase catalytic domain-containing protein2.9e-7296.55Show/hide
Query:  MFSRASNQAESEGIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAV
        MFSRASNQ ESEGIFISQEKYAKNIIKKF LEQSRHKRTPAATHVKITKDTDGARADH+LYRSIIGSLLYLTASRPDIAYAIGICARYQ+AP+MSHLKAV
Subjt:  MFSRASNQAESEGIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAV

Query:  KRILKYIHGINNFGILYSYDTASILVGYCDADWAGSSYDKKSTSR
        KRILKYIHGINNFGILYSYDTASILVGYCDADWAGSSYDKKSTSR
Subjt:  KRILKYIHGINNFGILYSYDTASILVGYCDADWAGSSYDKKSTSR

A0A5A7VCL5 Putative mitochondrial protein1.5e-6878.7Show/hide
Query:  MFSRASNQAESEGIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAV
        +F     + +SEGIFISQEKYAK+IIKKF LEQSRHKRTPAATHVKITKDT+GARA+HKLYRSIIGSLLYLTASRP+IAY +G CARYQ  P+ SHL+AV
Subjt:  MFSRASNQAESEGIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAV

Query:  KRILKYIHGINNFGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFSKKQNCVSLST
        KRILKY+H  ++FGI+YSYDT S LVGYCDADW GSS D+KST  GCFFL NNLISWFSKKQNCVSLST
Subjt:  KRILKYIHGINNFGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFSKKQNCVSLST

A0A5A7VKR7 Putative gag-pol polyprotein7.2e-7183.85Show/hide
Query:  ESEGIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAVKRILKYIHG
        +SE IFISQEKY KNI+KKF LEQSRHKRTPA T VKITKDT+GARADHKLYRSII SLL+LTASRPDIAYA+GIC RYQ  PQMSHL+AVKRILKY+HG
Subjt:  ESEGIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAVKRILKYIHG

Query:  INNFGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFSKKQNCVSLSTT
         ++FGILYSYDT SILVGYCDADWAGS+ D+K+TS GCFFL NNLISWFSKKQNCVSLSTT
Subjt:  INNFGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFSKKQNCVSLSTT

A0A5D3BUR4 Integrase catalytic domain-containing protein2.5e-7195.86Show/hide
Query:  MFSRASNQAESEGIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAV
        MFSRASNQ ESEGIFISQEKYAKNIIKKF LEQS HKRTPAATHVKITKDTDGARADH+LYRSIIGSLLYLTASRPDIAYAIGICARYQ+AP+MSHLKAV
Subjt:  MFSRASNQAESEGIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAV

Query:  KRILKYIHGINNFGILYSYDTASILVGYCDADWAGSSYDKKSTSR
        KRILKYIHGINNFGILYSYDTASILVGYCDADWAGSSYDKKSTSR
Subjt:  KRILKYIHGINNFGILYSYDTASILVGYCDADWAGSSYDKKSTSR

A0A5D3D3G3 Putative gag-pol polyprotein7.2e-7183.85Show/hide
Query:  ESEGIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAVKRILKYIHG
        +SE IFISQEKY KNI+KKF LEQSRHKRTPA T VKITKDT+GARADHKLYRSII SLL+LTASRPDIAYA+GIC RYQ  PQMSHL+AVKRILKY+HG
Subjt:  ESEGIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAVKRILKYIHG

Query:  INNFGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFSKKQNCVSLSTT
         ++FGILYSYDT SILVGYCDADWAGS+ D+K+TS GCFFL NNLISWFSKKQNCVSLSTT
Subjt:  INNFGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFSKKQNCVSLSTT

SwissProt top hitse value%identityAlignment
P0CV72 Secreted RxLR effector protein 1613.4e-1739.64Show/hide
Query:  YRSIIGSLLYL-TASRPDIAYAIGICARYQIAPQMSHLKAVKRILKYIHGINNFGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFS
        Y S +G+++YL   +RPD+A A+G+ +++   P  +H +A+KR+L+Y+     +G+ ++    + LVGY DADWAG    ++STS   F L    +SW S
Subjt:  YRSIIGSLLYL-TASRPDIAYAIGICARYQIAPQMSHLKAVKRILKYIHGINNFGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFS

Query:  KKQNCVSLSTT
        KKQ  V+LS+T
Subjt:  KKQNCVSLSTT

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.3e-2136.53Show/hide
Query:  SEGIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHK------LYRSIIGSLLY-LTASRPDIAYAIGICARYQIAPQMSHLKAVKRI
        S  +++SQEKY + ++++F ++ ++   TP A H+K++K       + K       Y S +GSL+Y +  +RPDIA+A+G+ +R+   P   H +AVK I
Subjt:  SEGIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHK------LYRSIIGSLLY-LTASRPDIAYAIGICARYQIAPQMSHLKAVKRI

Query:  LKYIHGINNFGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFSKKQNCVSLSTT
        L+Y+ G     + +   +  IL GY DAD AG   ++KS++   F      ISW SK Q CV+LSTT
Subjt:  LKYIHGINNFGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFSKKQNCVSLSTT

P92519 Uncharacterized mitochondrial protein AtMg008106.5e-2135.22Show/hide
Query:  GIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGAR-ADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAVKRILKYIHGIN
        G+F+SQ KYA+ I+    +   +   TP    +K+      A+  D   +RSI+G+L YLT +RPDI+YA+ I  +    P ++    +KR+L+Y+ G  
Subjt:  GIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGAR-ADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAVKRILKYIHGIN

Query:  NFGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFSKKQNCVSLSTT
          G+    ++   +  +CD+DWAG +  ++ST+  C FL  N+ISW +K+Q  VS S+T
Subjt:  NFGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFSKKQNCVSLSTT

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE18.5e-2136.71Show/hide
Query:  GIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAVKRILKYIHGINN
        G+ +SQ +Y  +++ +  +  ++   TP A   K++  +     D   YR I+GSL YL  +RPDI+YA+   +++   P   HL+A+KRIL+Y+ G  N
Subjt:  GIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAVKRILKYIHGINN

Query:  FGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFSKKQNCVSLSTT
         GI         L  Y DADWAG   D  ST+    +L ++ ISW SKKQ  V  S+T
Subjt:  FGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFSKKQNCVSLSTT

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE25.0e-2135.85Show/hide
Query:  EGIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAVKRILKYIHGIN
        +G+ +SQ +Y  +++ +  +  ++   TP AT  K+T  +     D   YR I+GSL YL  +RPD++YA+   ++Y   P   H  A+KR+L+Y+ G  
Subjt:  EGIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAVKRILKYIHGIN

Query:  NFGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFSKKQNCVSLSTT
        + GI         L  Y DADWAG + D  ST+    +L ++ ISW SKKQ  V  S+T
Subjt:  NFGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFSKKQNCVSLSTT

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 89.7e-2035.67Show/hide
Query:  GIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAVKRILKYIHGINN
        GI I Q KYA +++ +  L   +    P    V  +  + G   D K YR +IG L+YL  +R DI++A+   +++  AP+++H +AV +IL YI G   
Subjt:  GIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAVKRILKYIHGINN

Query:  FGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFSKKQNCVSLST
         G+ YS      L  + DA +      ++ST+  C FL  +LISW SKKQ  VS S+
Subjt:  FGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFSKKQNCVSLST

ATMG00240.1 Gag-Pol-related retrotransposon family protein2.5e-0729.11Show/hide
Query:  LYLTASRPDIAYAIGICARYQIAPQMSHLKAVKRILKYIHGINNFGILYSYDTASILVGYCDADWAGSSYDKKSTSRGC
        +YLT +RPD+ +A+   +++  A + + ++AV ++L Y+ G    G+ YS  +   L  + D+DWA     ++S +  C
Subjt:  LYLTASRPDIAYAIGICARYQIAPQMSHLKAVKRILKYIHGINNFGILYSYDTASILVGYCDADWAGSSYDKKSTSRGC

ATMG00810.1 DNA/RNA polymerases superfamily protein4.6e-2235.22Show/hide
Query:  GIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGAR-ADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAVKRILKYIHGIN
        G+F+SQ KYA+ I+    +   +   TP    +K+      A+  D   +RSI+G+L YLT +RPDI+YA+ I  +    P ++    +KR+L+Y+ G  
Subjt:  GIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGAR-ADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAVKRILKYIHGIN

Query:  NFGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFSKKQNCVSLSTT
          G+    ++   +  +CD+DWAG +  ++ST+  C FL  N+ISW +K+Q  VS S+T
Subjt:  NFGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFSKKQNCVSLSTT


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTTCTCGAGCTTCAAATCAAGCAGAAAGTGAAGGTATATTCATATCTCAAGAAAAGTATGCCAAGAACATAATTAAAAAATTCATATTAGAACAGTCTCGGCACAA
AAGGACTCCAGCTGCAACACACGTTAAAATTACCAAAGATACTGATGGTGCAAGAGCAGACCACAAACTTTACAGAAGCATAATCGGTAGTCTGTTGTATCTAACTGCCA
GTCGACCTGACATAGCTTATGCTATTGGGATATGTGCTCGTTATCAGATTGCTCCTCAAATGTCACATCTAAAGGCTGTTAAACGAATCCTCAAGTATATTCATGGAATA
AATAATTTTGGAATTCTGTATTCCTATGACACGGCTTCAATCTTGGTTGGATATTGCGATGCCGATTGGGCAGGCTCTTCTTATGATAAGAAAAGCACCTCTAGAGGTTG
TTTCTTTCTTTGGAATAATCTTATCTCATGGTTCAGTAAGAAACAAAATTGTGTTTCTTTGTCTACAACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTTCTCGAGCTTCAAATCAAGCAGAAAGTGAAGGTATATTCATATCTCAAGAAAAGTATGCCAAGAACATAATTAAAAAATTCATATTAGAACAGTCTCGGCACAA
AAGGACTCCAGCTGCAACACACGTTAAAATTACCAAAGATACTGATGGTGCAAGAGCAGACCACAAACTTTACAGAAGCATAATCGGTAGTCTGTTGTATCTAACTGCCA
GTCGACCTGACATAGCTTATGCTATTGGGATATGTGCTCGTTATCAGATTGCTCCTCAAATGTCACATCTAAAGGCTGTTAAACGAATCCTCAAGTATATTCATGGAATA
AATAATTTTGGAATTCTGTATTCCTATGACACGGCTTCAATCTTGGTTGGATATTGCGATGCCGATTGGGCAGGCTCTTCTTATGATAAGAAAAGCACCTCTAGAGGTTG
TTTCTTTCTTTGGAATAATCTTATCTCATGGTTCAGTAAGAAACAAAATTGTGTTTCTTTGTCTACAACTTAA
Protein sequenceShow/hide protein sequence
MFSRASNQAESEGIFISQEKYAKNIIKKFILEQSRHKRTPAATHVKITKDTDGARADHKLYRSIIGSLLYLTASRPDIAYAIGICARYQIAPQMSHLKAVKRILKYIHGI
NNFGILYSYDTASILVGYCDADWAGSSYDKKSTSRGCFFLWNNLISWFSKKQNCVSLSTT