; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0172021 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0172021
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPol
Genome locationCMiso1.1chr06:27816153..27816962
RNA-Seq ExpressionCmc06g0172021
SyntenyCmc06g0172021
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
ERM98543.1 hypothetical protein AMTR_s04311p00004950, partial [Amborella trichopoda]2.2e-12178.73Show/hide
Query:  MDKAHPSNIPMVVRSLDVKNDIFRPREDNEELLGPEVPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKS
        MDK+HP + PMVVRSLDV+ D FRPRE++EELLGPEVPY SAIG LMYLAN TRPDIAFSVNLLAR+SS+PT RHW  +K++LRYL+GTID GLFYSN  
Subjt:  MDKAHPSNIPMVVRSLDVKNDIFRPREDNEELLGPEVPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKS

Query:  NFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQI
           L+GYADAGYL DPHKARSQTGYLFTCG   ISWRS KQT+ ATSSNHAEILAIHEASRECVWLRSMT HIR TCGL+ +K +PTIL+EDN ACIAQ+
Subjt:  NFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQI

Query:  KGGYIKGDRTKHISPKLFYTHDLEENGDINVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLTEL
        KGGYIKGDRTKHISPK F+TH+L+ENGDI+VQQI S DNLADLFTK+LPTSTFEK+VH IGMRRL +L
Subjt:  KGGYIKGDRTKHISPKLFYTHDLEENGDINVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLTEL

KAA0067250.1 Pol [Cucumis melo var. makuwa]9.0e-13991.82Show/hide
Query:  MDKAHPSNIPMVVRSLDVKNDIFRPREDNEELLGPEVPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKS
        MDKAHP NIPMVVRSLDVK DIFRPREDNEELLGPEVPY SAIG LM LANNTRPDIAFSVNLLARYSSSPTKRHWN VK+VLRYLRGTIDM LFYSNKS
Subjt:  MDKAHPSNIPMVVRSLDVKNDIFRPREDNEELLGPEVPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKS

Query:  NFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQI
        NFDLVGYADAGYL DP KARSQ GYLFT GG  ISWRSVKQTMTATSSNHAEILAIHE SRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQI
Subjt:  NFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQI

Query:  KGGYIKGDRTKHISPKLFYTHDLEENGDINVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLTELK
        KGGYIKGDRTKH+SPKLFYTH+LEENGDI+VQQISSKDNL DLFTKALPT TFEKLVHNIGM RL ELK
Subjt:  KGGYIKGDRTKHISPKLFYTHDLEENGDINVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLTELK

KAF7137709.1 hypothetical protein RHSIM_Rhsim07G0041900 [Rhododendron simsii]8.5e-12178.73Show/hide
Query:  MDKAHPSNIPMVVRSLDVKNDIFRPREDNEELLGPEVPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKS
        MDKAHP + PMVVRSLDV  D FRP E+ E++LGPEVPY SAIG LMYLAN TRPDIAFSVNLLARYSS+PT+RHW  +K++ RYLRGTID+GLFYSN S
Subjt:  MDKAHPSNIPMVVRSLDVKNDIFRPREDNEELLGPEVPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKS

Query:  NFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQI
           L+GYADAGYL DPHKARSQTGY+FTCGG  ISWRSVKQT+TATSSNH+EI+AIHE SRECVWLRSM  HIRE CGLS  K+ PTIL+EDN ACI QI
Subjt:  NFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQI

Query:  KGGYIKGDRTKHISPKLFYTHDLEENGDINVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLTEL
        KGGYIKGDRTKHISPK FYTHDL++NGDI+VQQI S DNLADLFTKALPT+TF+KLV NIGMRRL  L
Subjt:  KGGYIKGDRTKHISPKLFYTHDLEENGDINVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLTEL

KAF7152015.1 hypothetical protein RHSIM_Rhsim01G0238600 [Rhododendron simsii]1.8e-11876.87Show/hide
Query:  MDKAHPSNIPMVVRSLDVKNDIFRPREDNEELLGPEVPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKS
        MDKAHP + PMVVRSLDV  D FRP E+ E++LGPEVPY SAIG LMYLAN TRPDIAFSVNLLARYSS+PT+RHW  +K++ RYLRGT+D+GLFYS  S
Subjt:  MDKAHPSNIPMVVRSLDVKNDIFRPREDNEELLGPEVPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKS

Query:  NFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQI
           L+GYADAGYL DPHKARSQTGY+F CGG  ISWRSVKQT+TATSSNH+EI+AIHE SRECVWLRSM  HIRE CGLS  K+ PTIL+EDN ACI QI
Subjt:  NFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQI

Query:  KGGYIKGDRTKHISPKLFYTHDLEENGDINVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLTEL
        KGGYIKGDRTKHISPK FYTHDL++NGDI+VQQI S DNLAD+FTKALPT+TF+KLV NIGM RL +L
Subjt:  KGGYIKGDRTKHISPKLFYTHDLEENGDINVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLTEL

TYK21506.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.0e-13592.66Show/hide
Query:  MVVRSLDVKNDIFRPREDNEELLGPEVPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKSNFDLVGYADA
        M+VRSLDVK DIFRPREDNEELLGPEVPY SAIG LMYLANNTRPDIAFSVNLLARYS SPTKRHWN VK+VLRYLRGTIDMGLFYSNKSNFDLVGYADA
Subjt:  MVVRSLDVKNDIFRPREDNEELLGPEVPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKSNFDLVGYADA

Query:  GYLFDPHKARSQTGYLFTCGGIVISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQIKGGYIKGDRT
        G+L DPHKARSQTGYLFTC G  ISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTH+IRETCGLSFSKNLPTILFEDNTACI QIKGGYIKGDRT
Subjt:  GYLFDPHKARSQTGYLFTCGGIVISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQIKGGYIKGDRT

Query:  KHISPKLFYTHDLEENGDINVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLTELK
        KHISPKLFYTHDLEENGDI+VQQISSKDNL DLFTKAL TSTFEKLVHNIGMR+L ELK
Subjt:  KHISPKLFYTHDLEENGDINVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLTELK

TrEMBL top hitse value%identityAlignment
A0A2N9IR78 Reverse transcriptase Ty1/copia-type domain-containing protein2.9e-11977.99Show/hide
Query:  MDKAHPSNIPMVVRSLDVKNDIFRPREDNEELLGPEVPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKS
        MDKAHP + PMVVRSLDVK D FRP+E  EE LGPEVPY SAIG LMYLAN TRPDIAFSVNLLARYSS+PT RHWN VK+VLRYLRGT DMGLFY NKS
Subjt:  MDKAHPSNIPMVVRSLDVKNDIFRPREDNEELLGPEVPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKS

Query:  NFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQI
        N  LVGYADAGYL DPHK RSQTGYLFTCG   ISWRSVKQT++ATSSNH+EI+AIHEASRECVWLRS+  HIRE CGLS  K+ PTIL+EDN ACI QI
Subjt:  NFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQI

Query:  KGGYIKGDRTKHISPKLFYTHDLEENGDINVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLTEL
        +GGYIKGDRTKHISPK FYTH+L+++GDI+V+QI S +NLAD+FTK+LPT+TF+K+VH+IGMRRL +L
Subjt:  KGGYIKGDRTKHISPKLFYTHDLEENGDINVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLTEL

A0A2N9J4G7 Reverse transcriptase Ty1/copia-type domain-containing protein8.5e-11977.61Show/hide
Query:  MDKAHPSNIPMVVRSLDVKNDIFRPREDNEELLGPEVPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKS
        MDKAHP + PMVVRSLDVK D FRP+E  EE LGPEVPY SAIG LMYLAN TRPDIAFSVNLLARYSS+PT RHWN VK+VLRYLRGT DMGLFY NKS
Subjt:  MDKAHPSNIPMVVRSLDVKNDIFRPREDNEELLGPEVPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKS

Query:  NFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQI
        N  LVGYADAGYL DPHK RSQTGYLFTCG   ISWRSVKQT++ATSSNH+EI+AIHEASRECVWLRS+  HI+E CGLS  K+ PTIL+EDN ACI QI
Subjt:  NFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQI

Query:  KGGYIKGDRTKHISPKLFYTHDLEENGDINVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLTEL
        +GGYIKGDRTKHISPK FYTH+L+++GDI+V+QI S +NLAD+FTK+LPT+TF+K+VH+IGMRRL +L
Subjt:  KGGYIKGDRTKHISPKLFYTHDLEENGDINVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLTEL

A0A5D3CKU4 Pol4.4e-13991.82Show/hide
Query:  MDKAHPSNIPMVVRSLDVKNDIFRPREDNEELLGPEVPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKS
        MDKAHP NIPMVVRSLDVK DIFRPREDNEELLGPEVPY SAIG LM LANNTRPDIAFSVNLLARYSSSPTKRHWN VK+VLRYLRGTIDM LFYSNKS
Subjt:  MDKAHPSNIPMVVRSLDVKNDIFRPREDNEELLGPEVPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKS

Query:  NFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQI
        NFDLVGYADAGYL DP KARSQ GYLFT GG  ISWRSVKQTMTATSSNHAEILAIHE SRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQI
Subjt:  NFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQI

Query:  KGGYIKGDRTKHISPKLFYTHDLEENGDINVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLTELK
        KGGYIKGDRTKH+SPKLFYTH+LEENGDI+VQQISSKDNL DLFTKALPT TFEKLVHNIGM RL ELK
Subjt:  KGGYIKGDRTKHISPKLFYTHDLEENGDINVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLTELK

A0A5D3DD63 Retrovirus-related Pol polyprotein from transposon TNT 1-942.9e-13592.66Show/hide
Query:  MVVRSLDVKNDIFRPREDNEELLGPEVPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKSNFDLVGYADA
        M+VRSLDVK DIFRPREDNEELLGPEVPY SAIG LMYLANNTRPDIAFSVNLLARYS SPTKRHWN VK+VLRYLRGTIDMGLFYSNKSNFDLVGYADA
Subjt:  MVVRSLDVKNDIFRPREDNEELLGPEVPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKSNFDLVGYADA

Query:  GYLFDPHKARSQTGYLFTCGGIVISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQIKGGYIKGDRT
        G+L DPHKARSQTGYLFTC G  ISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTH+IRETCGLSFSKNLPTILFEDNTACI QIKGGYIKGDRT
Subjt:  GYLFDPHKARSQTGYLFTCGGIVISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQIKGGYIKGDRT

Query:  KHISPKLFYTHDLEENGDINVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLTELK
        KHISPKLFYTHDLEENGDI+VQQISSKDNL DLFTKAL TSTFEKLVHNIGMR+L ELK
Subjt:  KHISPKLFYTHDLEENGDINVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLTELK

U5CXL6 Uncharacterized protein (Fragment)1.1e-12178.73Show/hide
Query:  MDKAHPSNIPMVVRSLDVKNDIFRPREDNEELLGPEVPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKS
        MDK+HP + PMVVRSLDV+ D FRPRE++EELLGPEVPY SAIG LMYLAN TRPDIAFSVNLLAR+SS+PT RHW  +K++LRYL+GTID GLFYSN  
Subjt:  MDKAHPSNIPMVVRSLDVKNDIFRPREDNEELLGPEVPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKS

Query:  NFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQI
           L+GYADAGYL DPHKARSQTGYLFTCG   ISWRS KQT+ ATSSNHAEILAIHEASRECVWLRSMT HIR TCGL+ +K +PTIL+EDN ACIAQ+
Subjt:  NFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQI

Query:  KGGYIKGDRTKHISPKLFYTHDLEENGDINVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLTEL
        KGGYIKGDRTKHISPK F+TH+L+ENGDI+VQQI S DNLADLFTK+LPTSTFEK+VH IGMRRL +L
Subjt:  KGGYIKGDRTKHISPKLFYTHDLEENGDINVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLTEL

SwissProt top hitse value%identityAlignment
P04146 Copia protein3.7e-3435.51Show/hide
Query:  PREDNEELLGPE----VPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKSNFD--LVGYADAGYLFDPHK
        P + N ELL  +     P  S IG LMY+   TRPD+  +VN+L+RYSS      W  +K VLRYL+GTIDM L +     F+  ++GY D+ +      
Subjt:  PREDNEELLGPE----VPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKSNFD--LVGYADAGYLFDPHK

Query:  ARSQTGYLFTCGGI-VISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHISPKL
         +S TGYLF      +I W + +Q   A SS  AE +A+ EA RE +WL+ +         ++     P  ++EDN  CI+ I        R KHI  K 
Subjt:  ARSQTGYLFTCGGI-VISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHISPKL

Query:  FYTHDLEENGDINVQQISSKDNLADLFTKALPTSTFEKLVHNIGM
         +  +  +N  I ++ I +++ LAD+FTK LP + F +L   +G+
Subjt:  FYTHDLEENGDINVQQISSKDNLADLFTKALPTSTFEKLVHNIGM

P0CV72 Secreted RxLR effector protein 1619.7e-2744.2Show/hide
Query:  VPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKSNFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISW
        VPY SA+G +MYL   TRPD+A +V +L++++S P   HW  +K VLRYL+ T   GL ++      LVGY+DA +  D    RS +GYLF   G  +SW
Subjt:  VPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKSNFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISW

Query:  RSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIR
        RS KQ   A SS   E +A+ EA++E VWL   T   +
Subjt:  RSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIR

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-943.1e-3336.56Show/hide
Query:  EVPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKSNFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVIS
        +VPY SA+G+LMY    TRPDIA +V +++R+  +P K HW  VK++LRYLRGT    L +   S+  L GY DA    D    +S TGYLFT  G  IS
Subjt:  EVPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKSNFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVIS

Query:  WRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDINVQQIS
        W+S  Q   A S+  AE +A  E  +E +WL+     +    GL   +    +++ D+ + I   K       RTKHI  +  +  ++ ++  + V +IS
Subjt:  WRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDINVQQIS

Query:  SKDNLADLFTKALPTSTFEKLVHNIGM
        + +N AD+ TK +P + FE     +GM
Subjt:  SKDNLADLFTKALPTSTFEKLVHNIGM

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE13.7e-2631.28Show/hide
Query:  YHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKSNFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISWRS
        Y   +G+L YLA  TRPDI+++VN L+++   PT+ H   +K +LRYL GT + G+F    +   L  Y+DA +  D     S  GY+   G   ISW S
Subjt:  YHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKSNFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISWRS

Query:  VKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDINVQQISSKD
         KQ     SS  AE  ++   S E  W+ S+   +    G+  ++  P +++ DN      +    +   R KHI+    +  +  ++G + V  +S+ D
Subjt:  VKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDINVQQISSKD

Query:  NLADLFTKALPTSTFEKLVHNIGMRRL
         LAD  TK L  + F+     IG+ R+
Subjt:  NLADLFTKALPTSTFEKLVHNIGMRRL

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE26.7e-2833.48Show/hide
Query:  YHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKSNFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISWRS
        Y   +G+L YLA  TRPD++++VN L++Y   PT  HWN +K VLRYL GT D G+F    +   L  Y+DA +  D     S  GY+   G   ISW S
Subjt:  YHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKSNFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISWRS

Query:  VKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDINVQQISSKD
         KQ     SS  AE  ++   S E  W+ S+   +    G+  S   P +++ DN      +    +   R KHI+    +  +  ++G + V  +S+ D
Subjt:  VKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHISPKLFYTHDLEENGDINVQQISSKD

Query:  NLADLFTKALPTSTFEKLVHNIGM
         LAD  TK L    F+     IG+
Subjt:  NLADLFTKALPTSTFEKLVHNIGM

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 82.4e-2539.43Show/hide
Query:  YHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKSNFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISWRS
        Y   IG LMYL   TR DI+F+VN L+++S +P   H   V  +L Y++GT+  GLFYS+++   L  ++DA +       RS  GY    G  +ISW+S
Subjt:  YHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKSNFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISWRS

Query:  VKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHI
         KQ + + SS  AE  A+  A+ E +WL      ++    L  SK  PT+LF DNTA I  I    +  +RTKHI
Subjt:  VKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHI

ATMG00240.1 Gag-Pol-related retrotransposon family protein3.8e-1041.77Show/hide
Query:  MYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKSNFDLVGYADAGYLFDPHKARSQTGY
        MYL   TRPD+ F+VN L+++SS+        V  VL Y++GT+  GLFYS  S+  L  +AD+ +   P   RS TG+
Subjt:  MYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKSNFDLVGYADAGYLFDPHKARSQTGY

ATMG00810.1 DNA/RNA polymerases superfamily protein2.5e-1432.28Show/hide
Query:  YHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKSNFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISWRS
        + S +G L YL   TRPDI+++VN++ +    PT   ++ +K VLRY++GTI  GL+    S  ++  + D+ +       RS TG+    G  +ISW +
Subjt:  YHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKSNFDLVGYADAGYLFDPHKARSQTGYLFTCGGIVISWRS

Query:  VKQTMTATSSNHAEILAIHEASRECVW
         +Q   + SS   E  A+   + E  W
Subjt:  VKQTMTATSSNHAEILAIHEASRECVW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAAGCACACCCATCGAACATTCCAATGGTGGTTCGATCACTAGATGTAAAAAATGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGT
ACCGTACCATAGTGCAATAGGTACACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCATTTTCAGTAAATTTGTTAGCAAGATATAGCTCTTCTCCAACAAAAA
GACATTGGAATAGAGTTAAGTATGTACTTCGTTATCTTCGAGGGACAATTGATATGGGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGCGGATGCT
GGATATTTATTTGATCCACACAAAGCAAGATCTCAAACAGGTTATCTATTTACATGTGGAGGAATTGTTATATCTTGGCGGTCTGTAAAGCAAACCATGACAGCCACTTC
ATCGAATCATGCCGAAATTCTTGCAATTCATGAAGCTAGTAGAGAATGTGTATGGTTGAGGTCAATGACTCATCATATTCGAGAAACATGTGGTTTGTCTTTCAGTAAAA
ATTTACCAACAATATTATTTGAAGATAATACCGCATGTATAGCACAAATCAAAGGAGGGTATATAAAAGGAGATAGAACAAAGCATATCTCACCAAAACTCTTCTATACG
CATGACCTTGAAGAAAATGGTGACATCAATGTTCAACAAATTTCTTCAAAAGACAACTTGGCGGACTTATTCACAAAAGCATTACCCACATCAACATTTGAAAAGCTAGT
GCACAACATTGGAATGCGACGACTCACAGAACTTAAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGACAAAGCACACCCATCGAACATTCCAATGGTGGTTCGATCACTAGATGTAAAAAATGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCCTGAAGT
ACCGTACCATAGTGCAATAGGTACACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCATTTTCAGTAAATTTGTTAGCAAGATATAGCTCTTCTCCAACAAAAA
GACATTGGAATAGAGTTAAGTATGTACTTCGTTATCTTCGAGGGACAATTGATATGGGTTTGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGCGGATGCT
GGATATTTATTTGATCCACACAAAGCAAGATCTCAAACAGGTTATCTATTTACATGTGGAGGAATTGTTATATCTTGGCGGTCTGTAAAGCAAACCATGACAGCCACTTC
ATCGAATCATGCCGAAATTCTTGCAATTCATGAAGCTAGTAGAGAATGTGTATGGTTGAGGTCAATGACTCATCATATTCGAGAAACATGTGGTTTGTCTTTCAGTAAAA
ATTTACCAACAATATTATTTGAAGATAATACCGCATGTATAGCACAAATCAAAGGAGGGTATATAAAAGGAGATAGAACAAAGCATATCTCACCAAAACTCTTCTATACG
CATGACCTTGAAGAAAATGGTGACATCAATGTTCAACAAATTTCTTCAAAAGACAACTTGGCGGACTTATTCACAAAAGCATTACCCACATCAACATTTGAAAAGCTAGT
GCACAACATTGGAATGCGACGACTCACAGAACTTAAGTGA
Protein sequenceShow/hide protein sequence
MDKAHPSNIPMVVRSLDVKNDIFRPREDNEELLGPEVPYHSAIGTLMYLANNTRPDIAFSVNLLARYSSSPTKRHWNRVKYVLRYLRGTIDMGLFYSNKSNFDLVGYADA
GYLFDPHKARSQTGYLFTCGGIVISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQIKGGYIKGDRTKHISPKLFYT
HDLEENGDINVQQISSKDNLADLFTKALPTSTFEKLVHNIGMRRLTELK