CuGenDBv2

Gene ID	Cmc06g0172031
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr06:27834212..27834997
RNA-Seq Expression	Cmc06g0172031
Synteny	Cmc06g0172031
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0026271.1 pol protein [Cucumis melo var. makuwa]

7.9e-140

96.55

Show/hide

Query:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW
        MSFGLTNA AVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQ LR NKLYAKFSKCEFWLKQ+SFLGHVVSKAGVS+DPAKIEAVT W
Subjt:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW

Query:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGKVVAYA
        TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT+PDGSGSFVIYSDASKKGLGCVL+QQGKVVAYA
Subjt:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR

KAA0042119.1 pol protein [Cucumis melo var. makuwa]

2.7e-140

96.55

Show/hide

Query:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW
        MSFGLTNA AVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQ LR NKLYAKFSKCEFWLKQ+SFLGHVVSKAGVS+DPAKIEAVTSW
Subjt:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW

Query:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGKVVAYA
        TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAP+LT+PDGSGSFVIYSDAS+KGLGCVL+QQGKVVAYA
Subjt:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR

KAA0048687.1 pol protein [Cucumis melo var. makuwa]

2.7e-140

96.93

Show/hide

Query:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW
        MSFGLTNA AVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQ LR NKLYAKFSKCEFWLKQ+SFLGHVVSKAGVS+DPAKIEAVT W
Subjt:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW

Query:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGKVVAYA
        TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT+PDGSGSFVIYSDASKKGLGCVL+QQGKVVAYA
Subjt:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR

KAA0053412.1 pol protein [Cucumis melo var. makuwa]

7.9e-140

96.55

Show/hide

Query:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW
        MSFGLTNA AVFMDLMNRVFREFLDTF+IVFIDDILIYSKTEAEHEEHLRMVLQ LR NKLYAKFSKCEFWLKQ+SFLGHVVSKAGVS+DPAKIEAVTSW
Subjt:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW

Query:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGKVVAYA
        TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT+PDGSGSFVIYSDASKKGLGCVL+QQGKVVAYA
Subjt:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ+R
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR

KAA0062719.1 pol protein [Cucumis melo var. makuwa]

5.5e-141

97.7

Show/hide

Query:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW
        MSFGLTNA AVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQ LR NKLYAKFSKCEFWLKQ+SFLGHVVSKAGVS+DPAKIEAVTSW
Subjt:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW

Query:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGKVVAYA
        TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT+PDGSGSFVIYSDASKKGLGCVLIQQGKVVAYA
Subjt:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SPZ2 Pol protein

3.8e-140

96.55

Show/hide

Query:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW
        MSFGLTNA AVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLR+VLQ LR NKLYAKFSKCEFWLKQ+SFLGHVVSKAGVS+DPAKIEAVT W
Subjt:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW

Query:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGKVVAYA
        TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT+PDGSGSFVIYSDASKKGLGCVL+QQGKVVAYA
Subjt:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR

A0A5A7TLA3 Pol protein

1.3e-140

96.55

Show/hide

Query:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW
        MSFGLTNA AVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQ LR NKLYAKFSKCEFWLKQ+SFLGHVVSKAGVS+DPAKIEAVTSW
Subjt:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW

Query:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGKVVAYA
        TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAP+LT+PDGSGSFVIYSDAS+KGLGCVL+QQGKVVAYA
Subjt:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR

A0A5A7U330 Reverse transcriptase

1.3e-140

96.93

Show/hide

Query:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW
        MSFGLTNA AVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQ LR NKLYAKFSKCEFWLKQ+SFLGHVVSKAGVS+DPAKIEAVT W
Subjt:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW

Query:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGKVVAYA
        TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT+PDGSGSFVIYSDASKKGLGCVL+QQGKVVAYA
Subjt:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR

A0A5A7UCD5 Reverse transcriptase

3.8e-140

96.55

Show/hide

Query:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW
        MSFGLTNA AVFMDLMNRVFREFLDTF+IVFIDDILIYSKTEAEHEEHLRMVLQ LR NKLYAKFSKCEFWLKQ+SFLGHVVSKAGVS+DPAKIEAVTSW
Subjt:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW

Query:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGKVVAYA
        TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT+PDGSGSFVIYSDASKKGLGCVL+QQGKVVAYA
Subjt:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQ+R
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR

A0A5A7VAL8 Pol protein

2.6e-141

97.7

Show/hide

Query:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW
        MSFGLTNA AVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQ LR NKLYAKFSKCEFWLKQ+SFLGHVVSKAGVS+DPAKIEAVTSW
Subjt:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW

Query:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGKVVAYA
        TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLT+PDGSGSFVIYSDASKKGLGCVLIQQGKVVAYA
Subjt:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR
        SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

6.7e-49

38.93

Show/hide

Query:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW
        M FGL NA A F   MN + R  L+   +V++DDI+++S +  EH + L +V + L    L  +  KCEF  ++ +FLGHV++  G+  +P KIEA+  +
Subjt:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW

Query:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDS-FQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGKVVAY
          P+   E+++FLGL GYYR+F+ NF+ IA P+T+  +K      +    DS F+ LK  +   P+L +PD +  F + +DAS   LG VL Q G  ++Y
Subjt:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDS-FQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGKVVAY

Query:  ASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR
         SR L  HE NY T + EL A+V+A K +RHYL G   +I +DH+ L + +  K+ N +  R
Subjt:  ASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR

P0CT41 Transposon Tf2-12 polyprotein

1.3e-39

35.18

Show/hide

Query:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW
        M +G++ A A F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L+   L    +KCEF   Q+ F+G+ +S+ G +     I+ V  W
Subjt:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW

Query:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGK-----
         +P    E+R FLG   Y R+F+   S++  PL  L +K   + W+     + +N+KQ LV+ PVL   D S   ++ +DAS   +G VL Q+       
Subjt:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGK-----

Query:  VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSL
         V Y S ++   + NY   D E+ A++ +LK WRHYL    E  +I TDH++L
Subjt:  VVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYG--EKIQIFTDHKSL

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

1.0e-44

36.13

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Query:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW
        + FGL NAS++F   ++ V RE +     V++DD++I+S+ E++H  H+  VL+ L    +     K  F+ + + +LG +VSK G   DP K++A+  +
Subjt:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW

Query:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR-----------KGAPFVWSKACEDSFQNLKQKLVTAPV-LTLPDGSGSFVIYSDASKKGLGC
          P  V +VRSFLGLA YYR F+++F+ IA P+T + +           K  P  +++   ++FQ L+  L +  V L  PD    F + +DAS  G+G 
Subjt:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR-----------KGAPFVWSKACEDSFQNLKQKLVTAPV-LTLPDGSGSFVIYSDASKKGLGC

Query:  VLIQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEK-IQIFTDHKSLKYFFTQKELNMRQRR
        VL Q+G+ +   SR LK  EQNY T++ EL A+V+AL   +++LYG + I IFTDH+ L +    +  N + +R
Subjt:  VLIQQGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEK-IQIFTDHKSLKYFFTQKELNMRQRR

P20825 Retrovirus-related Pol polyprotein from transposon 297

3.0e-49

38.55

Show/hide

Query:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW
        M FGL NA A F   MN + R  L+   +V++DDI+I+S +  EH   +++V   L    L  +  KCEF  K+ +FLGH+V+  G+  +P K++A+ S+
Subjt:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW

Query:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSK-ACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGKVVAY
          P+   E+R+FLGL GYYR+F+ N++ IA P+T   +K       K    ++F+ LK  ++  P+L LPD    FV+ +DAS   LG VL Q G  +++
Subjt:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSK-ACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGKVVAY

Query:  ASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR
         SR L  HE NY   + EL A+V+A K +RHYL G +  I +DH+ L++    KE   +  R
Subjt:  ASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

8.7e-41

32.85

Show/hide

Query:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW
        + FGL NA A+F  +++ + RE +     V+IDDI+++S+    H ++LR+VL  L    L     K  F   Q+ FLG++V+  G+  DP K+ A++  
Subjt:  MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSW

Query:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR-----------KGAPFVWSKACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCV
          P++V E++ FLG+  YYR+F+++++++A PLT LTR              P    +    SF +LK  L ++ +L  P  +  F + +DAS   +G V
Subjt:  TRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTR-----------KGAPFVWSKACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCV

Query:  LIQ----QGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE-KIQIFTDHKSLKYFFTQKELNMRQRR
        L Q    + + +AY SR L   E+NY T + E+ A++++L   R YLYG   I+++TDH+ L +    +  N + +R
Subjt:  LIQ----QGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGE-KIQIFTDHKSLKYFFTQKELNMRQRR

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

1.1e-27

46.56

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Query:  HLRMVLQILRGNKLYAKFSKCEFWLKQMSFLG--HVVSKAGVSMDPAKIEAVTSWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVW
        HL MVLQI   ++ YA   KC F   Q+++LG  H++S  GVS DPAK+EA+  W  P   +E+R FLGL GYYRRFV+N+ +I  PLT+L +K +   W
Subjt:  HLRMVLQILRGNKLYAKFSKCEFWLKQMSFLG--HVVSKAGVSMDPAKIEAVTSWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVW

Query:  SKACEDSFQNLKQKLVTAPVLTLPDGSGSFV
        ++    +F+ LK  + T PVL LPD    FV
Subjt:  SKACEDSFQNLKQKLVTAPVLTLPDGSGSFV

Sequences

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CDS sequence

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ATGTCTTTTGGTTTGACGAATGCTTCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTCCTAGATACTTTTGTGATTGTGTTTATTGATGATATCTTGAT
ATACTCCAAGACGGAAGCCGAGCATGAGGAGCATTTACGTATGGTTTTGCAAATACTTCGGGGTAATAAGTTGTATGCAAAGTTCTCGAAATGCGAGTTTTGGCTGAAGC
AGATGTCCTTTTTAGGCCATGTGGTTTCTAAGGCTGGAGTCTCTATGGATCCAGCTAAGATAGAGGCAGTCACCAGTTGGACTCGACCTTCCACAGTCAGTGAGGTTCGT
AGCTTTCTGGGTTTAGCAGGTTATTATCGACGGTTTGTGGAGAACTTTTCTCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGGAGCAA
GGCATGTGAGGACAGTTTCCAGAACCTTAAACAGAAGCTAGTTACCGCACCGGTTCTTACTTTACCTGATGGTTCTGGCAGTTTTGTGATTTATAGTGATGCTTCCAAGA
AGGGTTTGGGTTGTGTTTTGATACAGCAAGGTAAGGTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGAACTACCCTACACATGATTTAGAGTTGGCAGCA
GTGGTTTTTGCTTTGAAAATATGGAGGCATTACTTATATGGGGAAAAGATACAGATCTTCACGGATCATAAGAGCTTGAAATACTTCTTTACTCAGAAGGAATTGAATAT
GAGACAGCGAAGATGA

mRNA sequence

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Protein sequence

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MSFGLTNASAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQILRGNKLYAKFSKCEFWLKQMSFLGHVVSKAGVSMDPAKIEAVTSWTRPSTVSEVR
SFLGLAGYYRRFVENFSRIATPLTQLTRKGAPFVWSKACEDSFQNLKQKLVTAPVLTLPDGSGSFVIYSDASKKGLGCVLIQQGKVVAYASRQLKSHEQNYPTHDLELAA
VVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMRQRR

Cmc06g0172031 (gene) of Melon (Charmono) v1.1 genome