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Cmc06g0173471 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0173471
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr06:30221951..30222397
RNA-Seq ExpressionCmc06g0173471
SyntenyCmc06g0173471
Gene Ontology termsGO:0007034 - vacuolar transport (biological process)
GO:0015074 - DNA integration (biological process)
GO:0098869 - cellular oxidant detoxification (biological process)
GO:0005768 - endosome (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004601 - peroxidase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
GO:0051537 - 2 iron, 2 sulfur cluster binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037155.1 peroxidase 64 [Cucumis melo var. makuwa]2.5e-6685.81Show/hide
Query:  MLSLGIIQPSNSPYSSLVLLVKKKDGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHYEFLVM
        M+S GIIQP NSPYSSLVLLVKK DGSWRFCM+YRALNN T+PDKFPIP+IEELFDELNG NLFSKIDLKA YHQIRMHKEDIEKTAF THEGHYEFLVM
Subjt:  MLSLGIIQPSNSPYSSLVLLVKKKDGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHYEFLVM

Query:  SFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL
         FGLTNAP TFQSL+NS+FR YLRKFVLV F  ILIYSRG+EEH YHL
Subjt:  SFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL

KAA0049630.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.8e-6279.05Show/hide
Query:  MLSLGIIQPSNSPYSSLVLLVKKKDGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHYEFLVM
        MLS GII+PS SPYSS VLLV+KKDGSWRFC+DYRALNNVT+PDKFPIP++EELFDELNG ++FSKIDLKA YHQIRMH EDIEKTAF THEGHYEF+VM
Subjt:  MLSLGIIQPSNSPYSSLVLLVKKKDGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHYEFLVM

Query:  SFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL
         FGLTNAP+TFQ+LMN +F+ +LR+FVLV F DILIYS+G+EEH  HL
Subjt:  SFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL

KAA0049776.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.8e-6279.05Show/hide
Query:  MLSLGIIQPSNSPYSSLVLLVKKKDGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHYEFLVM
        MLS GII+PS SPYSS VLLV+KKDGSWRFC+DYRALNNVT+PDKFPIP++EELFDELNG ++FSKIDLKA YHQIRMH EDIEKTAF THEGHYEF+VM
Subjt:  MLSLGIIQPSNSPYSSLVLLVKKKDGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHYEFLVM

Query:  SFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL
         FGLTNAP+TFQ+LMN +F+ +LR+FVLV F DILIYS+G+EEH  HL
Subjt:  SFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL

TYK15990.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.8e-6279.05Show/hide
Query:  MLSLGIIQPSNSPYSSLVLLVKKKDGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHYEFLVM
        MLS GII+PS SPYSS VLLV+KKDGSWRFC+DYRALNNVT+PDKFPIP++EELFDELNG ++FSKIDLKA YHQIRMH EDIEKTAF THEGHYEF+VM
Subjt:  MLSLGIIQPSNSPYSSLVLLVKKKDGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHYEFLVM

Query:  SFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL
         FGLTNAP+TFQ+LMN +F+ +LR+FVLV F DILIYS+G+EEH  HL
Subjt:  SFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL

TYK23090.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.8e-6279.05Show/hide
Query:  MLSLGIIQPSNSPYSSLVLLVKKKDGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHYEFLVM
        MLS GII+PS SPYSS VLLV+KKDGSWRFC+DYRALNNVT+PDKFPIP++EELFDELNG ++FSKIDLKA YHQIRMH EDIEKTAF THEGHYEF+VM
Subjt:  MLSLGIIQPSNSPYSSLVLLVKKKDGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHYEFLVM

Query:  SFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL
         FGLTNAP+TFQ+LMN +F+ +LR+FVLV F DILIYS+G+EEH  HL
Subjt:  SFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL

TrEMBL top hitse value%identityAlignment
A0A5A7T6Q1 Peroxidase 641.2e-6685.81Show/hide
Query:  MLSLGIIQPSNSPYSSLVLLVKKKDGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHYEFLVM
        M+S GIIQP NSPYSSLVLLVKK DGSWRFCM+YRALNN T+PDKFPIP+IEELFDELNG NLFSKIDLKA YHQIRMHKEDIEKTAF THEGHYEFLVM
Subjt:  MLSLGIIQPSNSPYSSLVLLVKKKDGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHYEFLVM

Query:  SFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL
         FGLTNAP TFQSL+NS+FR YLRKFVLV F  ILIYSRG+EEH YHL
Subjt:  SFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL

A0A5A7U2S1 Ty3/gypsy retrotransposon protein1.8e-6279.05Show/hide
Query:  MLSLGIIQPSNSPYSSLVLLVKKKDGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHYEFLVM
        MLS GII+PS SPYSS VLLV+KKDGSWRFC+DYRALNNVT+PDKFPIP++EELFDELNG ++FSKIDLKA YHQIRMH EDIEKTAF THEGHYEF+VM
Subjt:  MLSLGIIQPSNSPYSSLVLLVKKKDGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHYEFLVM

Query:  SFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL
         FGLTNAP+TFQ+LMN +F+ +LR+FVLV F DILIYS+G+EEH  HL
Subjt:  SFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL

A0A5A7U6J3 Ty3/gypsy retrotransposon protein1.8e-6279.05Show/hide
Query:  MLSLGIIQPSNSPYSSLVLLVKKKDGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHYEFLVM
        MLS GII+PS SPYSS VLLV+KKDGSWRFC+DYRALNNVT+PDKFPIP++EELFDELNG ++FSKIDLKA YHQIRMH EDIEKTAF THEGHYEF+VM
Subjt:  MLSLGIIQPSNSPYSSLVLLVKKKDGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHYEFLVM

Query:  SFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL
         FGLTNAP+TFQ+LMN +F+ +LR+FVLV F DILIYS+G+EEH  HL
Subjt:  SFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL

A0A5D3CXB1 Ty3/gypsy retrotransposon protein1.8e-6279.05Show/hide
Query:  MLSLGIIQPSNSPYSSLVLLVKKKDGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHYEFLVM
        MLS GII+PS SPYSS VLLV+KKDGSWRFC+DYRALNNVT+PDKFPIP++EELFDELNG ++FSKIDLKA YHQIRMH EDIEKTAF THEGHYEF+VM
Subjt:  MLSLGIIQPSNSPYSSLVLLVKKKDGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHYEFLVM

Query:  SFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL
         FGLTNAP+TFQ+LMN +F+ +LR+FVLV F DILIYS+G+EEH  HL
Subjt:  SFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL

A0A5D3DI73 Ty3/gypsy retrotransposon protein1.8e-6279.05Show/hide
Query:  MLSLGIIQPSNSPYSSLVLLVKKKDGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHYEFLVM
        MLS GII+PS SPYSS VLLV+KKDGSWRFC+DYRALNNVT+PDKFPIP++EELFDELNG ++FSKIDLKA YHQIRMH EDIEKTAF THEGHYEF+VM
Subjt:  MLSLGIIQPSNSPYSSLVLLVKKKDGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHYEFLVM

Query:  SFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL
         FGLTNAP+TFQ+LMN +F+ +LR+FVLV F DILIYS+G+EEH  HL
Subjt:  SFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.65.5e-3247.71Show/hide
Query:  MLSLGIIQPSNSPYSSLVLLV-KKKDGS----WRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHY
        ML+ GII+ SNSPY+S + +V KK+D S    +R  +DYR LN +T+ D+ PIP ++E+  +L   N F+ IDL   +HQI M  E + KTAF T  GHY
Subjt:  MLSLGIIQPSNSPYSSLVLLV-KKKDGS----WRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHY

Query:  EFLVMSFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL
        E+L M FGL NAP TFQ  MN I R  L K  LV   DI+++S  ++EH+  L
Subjt:  EFLVMSFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL

P20825 Retrovirus-related Pol polyprotein from transposon 2973.2e-3247.33Show/hide
Query:  MLSLGIIQPSNSPYSSLVLLVKKKD-----GSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHY
        ML+ G+I+ SNSPY+S   +V KK        +R  +DYR LN +T+PD++PIP ++E+  +L     F+ IDL   +HQI M +E I KTAF T  GHY
Subjt:  MLSLGIIQPSNSPYSSLVLLVKKKD-----GSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHY

Query:  EFLVMSFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHV
        E+L M FGL NAP TFQ  MN+I R  L K  LV   DI+I+S  + EH+
Subjt:  EFLVMSFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHV

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.8e-3048.65Show/hide
Query:  MLSLGIIQPSNSPYSSLVLLVKKKDGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHYEFLVM
        +L    I PS SP SS V+LV KKDG++R C+DYR LN  T+ D FP+P I+ L   +    +F+ +DL + YHQI M  +D  KTAF T  G YE+ VM
Subjt:  MLSLGIIQPSNSPYSSLVLLVKKKDGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHYEFLVM

Query:  SFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL
         FGL NAP+TF   M   FR    +FV V   DILI+S   EEH  HL
Subjt:  SFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus2.4e-2741.61Show/hide
Query:  MLSLGIIQPSNSPYSSLVLLVKKK-----DGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHY
        +L  GII+PSNSPY+S + +V KK     +  +R  +D++ LN VT+PD +PIP I      L     F+ +DL + +HQI M + DI KTAF T  G Y
Subjt:  MLSLGIIQPSNSPYSSLVLLVKKK-----DGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHY

Query:  EFLVMSFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEH
        EFL + FGL NAP  FQ +++ I R ++ K   V   DI+++S   + H
Subjt:  EFLVMSFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEH

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.8e-3048.65Show/hide
Query:  MLSLGIIQPSNSPYSSLVLLVKKKDGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHYEFLVM
        +L    I PS SP SS V+LV KKDG++R C+DYR LN  T+ D FP+P I+ L   +    +F+ +DL + YHQI M  +D  KTAF T  G YE+ VM
Subjt:  MLSLGIIQPSNSPYSSLVLLVKKKDGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHYEFLVM

Query:  SFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL
         FGL NAP+TF   M   FR    +FV V   DILI+S   EEH  HL
Subjt:  SFGLTNAPTTFQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL

Arabidopsis top hitse value%identityAlignment
ATMG00850.1 DNA/RNA polymerases superfamily protein2.2e-0475Show/hide
Query:  MLSLGIIQPSNSPYSSLVLLVKKKDGSW
        ML   IIQPS SPYSS VLLV+KKDG W
Subjt:  MLSLGIIQPSNSPYSSLVLLVKKKDGSW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGTCTTTAGGAATCATACAGCCGAGCAATAGTCCATATTCAAGCCTAGTGTTGCTAGTAAAGAAAAAGGATGGAAGCTGGAGATTTTGCATGGATTATCGCGCCCT
CAACAATGTGACAATGCCAGATAAGTTTCCTATTCCTATCATTGAAGAATTATTTGATGAACTTAATGGTACAAATCTATTTTCTAAGATCGATTTAAAGGCTGATTATC
ATCAGATTAGAATGCATAAGGAGGATATTGAAAAGACAGCTTTTGGAACTCATGAAGGACATTATGAATTTTTAGTGATGTCCTTTGGCTTAACAAATGCTCCAACTACA
TTTCAGTCACTCATGAATTCTATTTTTCGATCTTACCTAAGGAAATTTGTCTTGGTAATTTTTTATGACATCTTGATATACAGTAGAGGAATAGAGGAGCATGTATATCA
TTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGTTGTCTTTAGGAATCATACAGCCGAGCAATAGTCCATATTCAAGCCTAGTGTTGCTAGTAAAGAAAAAGGATGGAAGCTGGAGATTTTGCATGGATTATCGCGCCCT
CAACAATGTGACAATGCCAGATAAGTTTCCTATTCCTATCATTGAAGAATTATTTGATGAACTTAATGGTACAAATCTATTTTCTAAGATCGATTTAAAGGCTGATTATC
ATCAGATTAGAATGCATAAGGAGGATATTGAAAAGACAGCTTTTGGAACTCATGAAGGACATTATGAATTTTTAGTGATGTCCTTTGGCTTAACAAATGCTCCAACTACA
TTTCAGTCACTCATGAATTCTATTTTTCGATCTTACCTAAGGAAATTTGTCTTGGTAATTTTTTATGACATCTTGATATACAGTAGAGGAATAGAGGAGCATGTATATCA
TTTATAA
Protein sequenceShow/hide protein sequence
MLSLGIIQPSNSPYSSLVLLVKKKDGSWRFCMDYRALNNVTMPDKFPIPIIEELFDELNGTNLFSKIDLKADYHQIRMHKEDIEKTAFGTHEGHYEFLVMSFGLTNAPTT
FQSLMNSIFRSYLRKFVLVIFYDILIYSRGIEEHVYHL