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Cmc06g0174351 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0174351
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptionserine/arginine-rich splicing factor RS40-like isoform X1
Genome locationCMiso1.1chr06:31334976..31336149
RNA-Seq ExpressionCmc06g0174351
SyntenyCmc06g0174351
Gene Ontology termsGO:0000398 - mRNA splicing, via spliceosome (biological process)
GO:0016607 - nuclear speck (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR000504 - RNA recognition motif domain
IPR012677 - Nucleotide-binding alpha-beta plait domain superfamily
IPR035979 - RNA-binding domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7015551.1 Serine/arginine-rich splicing factor RS40 [Cucurbita argyrosperma subsp. argyrosperma]1.3e-1290Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
        MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS F+ +
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
XP_008449096.1 PREDICTED: serine/arginine-rich splicing factor RS40-like isoform X1 [Cucumis melo]1.3e-1290Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
        MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS F+ +
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
XP_022940255.1 serine/arginine-rich splicing factor RS40-like isoform X1 [Cucurbita moschata]1.3e-1290Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
        MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS F+ +
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
XP_022965059.1 serine/arginine-rich splicing factor RS40-like isoform X1 [Cucurbita maxima]1.3e-1290Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
        MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS F+ +
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
XP_023553356.1 serine/arginine-rich splicing factor RS40-like isoform X1 [Cucurbita pepo subsp. pepo]1.3e-1290Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
        MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS F+ +
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
TrEMBL top hitse value%identityAlignment
A0A1S4DXA1 serine/arginine-rich splicing factor RS40-like isoform X16.1e-1390Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
        MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS F+ +
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
A0A5A7VJB8 Serine/arginine-rich splicing factor RS40-like isoform X16.1e-1390Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
        MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS F+ +
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
A0A6J1HKQ4 serine/arginine-rich splicing factor RS40-like isoform X26.1e-1390Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
        MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS F+ +
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
A0A6J1HMP1 serine/arginine-rich splicing factor RS40-like isoform X16.1e-1390Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
        MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS F+ +
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
A0A6J1HPZ2 serine/arginine-rich splicing factor RS40-like isoform X16.1e-1390Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
        MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKS F+ +
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
SwissProt top hitse value%identityAlignment
P92964 Serine/arginine-rich splicing factor RS311.2e-1067.5Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
        M+P+F GNFEY+ RQ DLERLF +YG+VDRVDMKS ++ V
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
P92965 Serine/arginine-rich splicing factor RS402.2e-1275Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
        MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+ F+ V
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
P92966 Serine/arginine-rich splicing factor RS411.7e-1275Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
        MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+ F+ V
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
Q9ZPX8 Serine/arginine-rich splicing factor RS31A5.6e-0857.5Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
        M+ ++ GNF+YD R  DLERLFS++G+V RVDMKS ++ V
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
Arabidopsis top hitse value%identityAlignment
AT3G61860.1 RNA-binding (RRM/RBD/RNP motifs) family protein8.6e-1267.5Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
        M+P+F GNFEY+ RQ DLERLF +YG+VDRVDMKS ++ V
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
AT4G25500.1 arginine/serine-rich splicing factor 351.6e-1375Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
        MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+ F+ V
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
AT4G25500.4 arginine/serine-rich splicing factor 351.6e-1375Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
        MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+ F+ V
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
AT5G52040.1 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-1375Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
        MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+ F+ V
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
AT5G52040.2 RNA-binding (RRM/RBD/RNP motifs) family protein1.2e-1375Show/hide
Query:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV
        MKP+FCGNFEYDAR+ DLERLF +YGKV+RVDMK+ F+ V
Subjt:  MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLV

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGCCGATTTTTTGTGGAAACTTCGAGTATGATGCTCGCCAGCCTGATTTGGAAAGGCTGTTTAGTCGATATGGAAAAGTTGATAGAGTGGATATGAAATCTGAATT
TTCTTTGGTGCAGGATTTTCTTCGCATATTTCATAATCCTCTTGGATAA
mRNA sequenceShow/hide mRNA sequence
TAGTTTTGTATTTTCTTTTCCTCAAAAAGGGAAAATAAGTGAAAATATTTGAAATTATTCCGTATATGAAAATTAGGGTTAAAGAAAAGAAAACCCTAAATCTTATTTTC
TCCACAGCCGCAGTCCTCACACGGTACCTCTCGCTATCTCACCGGCGAATCCACACTGCGTTAATCGATCTCCGACGGCAGCCATACCATCTACGGCGGCCTCAAAGGAC
TTTTCTCATAGACTTTACGATTTTCTTTGAAACGGTAGTATGAAGCCGATTTTTTGTGGAAACTTCGAGTATGATGCTCGCCAGCCTGATTTGGAAAGGCTGTTTAGTCG
ATATGGAAAAGTTGATAGAGTGGATATGAAATCTGAATTTTCTTTGGTGCAGGATTTTCTTCGCATATTTCATAATCCTCTTGGATAAAGATGGCTCTTCAGATTTGAGT
GTTCTGCCTGGGACAAGCTTCTTCTTGTTTCCAAGAAGATTCATAGCGATCCTCAATGGCACCGACATCTTACATTTTCCTC
Protein sequenceShow/hide protein sequence
MKPIFCGNFEYDARQPDLERLFSRYGKVDRVDMKSEFSLVQDFLRIFHNPLG