; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0174801 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0174801
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationCMiso1.1chr06:31787215..31787694
RNA-Seq ExpressionCmc06g0174801
SyntenyCmc06g0174801
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR013103 - Reverse transcriptase, RNA-dependent DNA polymerase
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032842.1 hypothetical protein E6C27_scaffold1987G00140 [Cucumis melo var. makuwa]6.2e-7993.08Show/hide
Query:  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPT
        MSKGFKVNESDKCIYYK EGRLCIIICLYVDDMLIFGSNLHVINDVKSML+ NFDMKDLGEADVILGIKITR ENGISLDQSHYIEKILKKYNYFDSKP 
Subjt:  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPT

Query:  CTPYDSSVKLFKNTGDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH
        CTPYDSSVKLFKNTGDSVNQ EYASIIGSLRYAADC RP+IAYA+GLLCRFT+R SLEH
Subjt:  CTPYDSSVKLFKNTGDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH

KAA0058878.1 putative polyprotein [Cucumis melo var. makuwa]4.2e-7588.05Show/hide
Query:  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPT
        MSKGFKVNESDKC+YYKT+GRLCIIICLYVDDML F SNLHVINDVKSMLS NFDMKDLGEAD+ILGIKITRT+NGISLDQS+YIEKILKKYNYFDSKP 
Subjt:  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPT

Query:  CTPYDSSVKLFKNTGDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH
        CTPYDSSVKLFKNTGD+VNQ EY SIIGSLRY ADC RP+IAYA+GLLCRFT+R  LEH
Subjt:  CTPYDSSVKLFKNTGDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH

KAA0060459.1 hypothetical protein E6C27_scaffold22G002870 [Cucumis melo var. makuwa]2.4e-7893.08Show/hide
Query:  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPT
        MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLS NFDMKDLGEADVILGIKITRTENGI LDQSHYIEK LKKYNYFDSKPT
Subjt:  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPT

Query:  CTPYDSSVKLFKNTGDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH
        CTPYDSSVKLFKNTGDSVNQ EYASIIGSLRYA D  RP+IAYA+GLLCRFT+R SLEH
Subjt:  CTPYDSSVKLFKNTGDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH

TYK00058.1 hypothetical protein E5676_scaffold596G00040 [Cucumis melo var. makuwa]9.5e-8093.08Show/hide
Query:  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPT
        MSKGFKVNESD+CIYYKTEGR+CIIICLYVDDMLIFGSNLH+INDVKSMLSANFDMKDLGEADVILGIKI RTENGISLDQSHYIEKILKKYNYF+SKP 
Subjt:  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPT

Query:  CTPYDSSVKLFKNTGDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH
        CTPYDSSVKLFKNTGDSVNQ EYASIIGSLRYAADC RP+IAY IGLLCRFT+RLSLEH
Subjt:  CTPYDSSVKLFKNTGDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH

TYK06419.1 hypothetical protein E5676_scaffold163G001210 [Cucumis melo var. makuwa]1.5e-7791.19Show/hide
Query:  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPT
        +SKGFKVNESDKCIYYKTEGRLCIIICLYVDD+LIFGSNL+VINDVKSMLS NFDMK+L EADVILGIKITRT+NGISLDQSHYIEKILKKYNYFDSKPT
Subjt:  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPT

Query:  CTPYDSSVKLFKNTGDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH
        CTPYDSSVKLF+NTGDSVNQ EYASIIGSLRYAADC RP+IAYA+GLLCRFT+R SLEH
Subjt:  CTPYDSSVKLFKNTGDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH

TrEMBL top hitse value%identityAlignment
A0A5A7SNZ1 Reverse transcriptase Ty1/copia-type domain-containing protein3.0e-7993.08Show/hide
Query:  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPT
        MSKGFKVNESDKCIYYK EGRLCIIICLYVDDMLIFGSNLHVINDVKSML+ NFDMKDLGEADVILGIKITR ENGISLDQSHYIEKILKKYNYFDSKP 
Subjt:  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPT

Query:  CTPYDSSVKLFKNTGDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH
        CTPYDSSVKLFKNTGDSVNQ EYASIIGSLRYAADC RP+IAYA+GLLCRFT+R SLEH
Subjt:  CTPYDSSVKLFKNTGDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH

A0A5D3BLQ7 Reverse transcriptase Ty1/copia-type domain-containing protein4.6e-8093.08Show/hide
Query:  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPT
        MSKGFKVNESD+CIYYKTEGR+CIIICLYVDDMLIFGSNLH+INDVKSMLSANFDMKDLGEADVILGIKI RTENGISLDQSHYIEKILKKYNYF+SKP 
Subjt:  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPT

Query:  CTPYDSSVKLFKNTGDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH
        CTPYDSSVKLFKNTGDSVNQ EYASIIGSLRYAADC RP+IAY IGLLCRFT+RLSLEH
Subjt:  CTPYDSSVKLFKNTGDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH

A0A5D3C7T6 Reverse transcriptase Ty1/copia-type domain-containing protein7.4e-7891.19Show/hide
Query:  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPT
        +SKGFKVNESDKCIYYKTEGRLCIIICLYVDD+LIFGSNL+VINDVKSMLS NFDMK+L EADVILGIKITRT+NGISLDQSHYIEKILKKYNYFDSKPT
Subjt:  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPT

Query:  CTPYDSSVKLFKNTGDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH
        CTPYDSSVKLF+NTGDSVNQ EYASIIGSLRYAADC RP+IAYA+GLLCRFT+R SLEH
Subjt:  CTPYDSSVKLFKNTGDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH

A0A5D3D4T4 Reverse transcriptase Ty1/copia-type domain-containing protein1.1e-7893.08Show/hide
Query:  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPT
        MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLS NFDMKDLGEADVILGIKITRTENGI LDQSHYIEK LKKYNYFDSKPT
Subjt:  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPT

Query:  CTPYDSSVKLFKNTGDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH
        CTPYDSSVKLFKNTGDSVNQ EYASIIGSLRYA D  RP+IAYA+GLLCRFT+R SLEH
Subjt:  CTPYDSSVKLFKNTGDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH

A0A5D3DJH9 Putative polyprotein2.0e-7588.05Show/hide
Query:  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPT
        MSKGFKVNESDKC+YYKT+GRLCIIICLYVDDML F SNLHVINDVKSMLS NFDMKDLGEAD+ILGIKITRT+NGISLDQS+YIEKILKKYNYFDSKP 
Subjt:  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPT

Query:  CTPYDSSVKLFKNTGDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH
        CTPYDSSVKLFKNTGD+VNQ EY SIIGSLRY ADC RP+IAYA+GLLCRFT+R  LEH
Subjt:  CTPYDSSVKLFKNTGDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH

SwissProt top hitse value%identityAlignment
P04146 Copia protein2.7e-1634.19Show/hide
Query:  VNES-DKCIYYKTEGRL--CIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPTCTP
        VN S D+CIY   +G +   I + LYVDD++I   ++  +N+ K  L   F M DL E    +GI+I   E+ I L QS Y++KIL K+N  +     TP
Subjt:  VNES-DKCIYYKTEGRL--CIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPTCTP

Query:  YDSSVKLFKNTGDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLE
          S +       D        S+IG L Y   C RP++  A+ +L R++++ + E
Subjt:  YDSSVKLFKNTGDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLE

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-947.0e-2542.24Show/hide
Query:  SDKCIYYK--TEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKIT--RTENGISLDQSHYIEKILKKYNYFDSKPTCTPYD
        SD C+Y+K  +E    II+ LYVDDMLI G +  +I  +K  LS +FDMKDLG A  ILG+KI   RT   + L Q  YIE++L+++N  ++KP  TP  
Subjt:  SDKCIYYK--TEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKIT--RTENGISLDQSHYIEKILKKYNYFDSKPTCTPYD

Query:  SSVKLFK-------NTGDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH
          +KL K           ++ +  Y+S +GSL YA  C RP+IA+A+G++ RF      EH
Subjt:  SSVKLFK-------NTGDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH

P25600 Putative transposon Ty5-1 protein YCL074W1.0e-1534.67Show/hide
Query:  GFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENG-ISLDQSHYIEKILKKYNYFDSKPTCT
        GF  +E +  +Y+++     I I +YVDD+L+   +  + + VK  L+  + MKDLG+ D  LG+ I ++ NG I+L    YI K   +      K T T
Subjt:  GFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENG-ISLDQSHYIEKILKKYNYFDSKPTCT

Query:  PYDSSVKLFKNTGDSVNQF-EYASIIGSLRYAADCIRPNIAYAIGLLCRF
        P  +S  LF+ T   +     Y SI+G L + A+  RP+I+Y + LL RF
Subjt:  PYDSSVKLFKNTGDSVNQF-EYASIIGSLRYAADCIRPNIAYAIGLLCRF

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE13.1e-1734.39Show/hide
Query:  GFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPTCTP
        GF  + SD  ++    G+  + + +YVDD+LI G++  ++++    LS  F +KD  E    LGI+  R   G+ L Q  YI  +L + N   +KP  TP
Subjt:  GFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPTCTP

Query:  YDSSVKLFKNTGDSV-NQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH
           S KL   +G  + +  EY  I+GSL+Y A   RP+I+YA+  L +F +  + EH
Subjt:  YDSSVKLFKNTGDSV-NQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE27.7e-1631.25Show/hide
Query:  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPT
        ++ GF  + SD  ++    GR  I + +YVDD+LI G++  ++      LS  F +K+  +    LGI+  R   G+ L Q  Y   +L + N   +KP 
Subjt:  MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPT

Query:  CTPYDSSVKLFKNTGDSV-NQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH
         TP  +S KL  ++G  + +  EY  I+GSL+Y A   RP+++YA+  L ++ +  + +H
Subjt:  CTPYDSSVKLFKNTGDSV-NQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 82.7e-1631.21Show/hide
Query:  GFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPTCTP
        GF  + SD   + K    L + + +YVDD++I  +N   ++++KS L + F ++DLG     LG++I R+  GI++ Q  Y   +L +      KP+  P
Subjt:  GFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPTCTP

Query:  YDSSVKLFKNT-GDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH
         D SV    ++ GD V+   Y  +IG L Y     R +I++A+  L +F+    L H
Subjt:  YDSSVKLFKNT-GDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH

ATMG00810.1 DNA/RNA polymerases superfamily protein1.6e-1636Show/hide
Query:  ICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPTCTPYDSSVKLFKNTGDSVNQFEYAS
        + LYVDD+L+ GS+  ++N +   LS+ F MKDLG     LGI+I    +G+ L Q+ Y E+IL      D KP  TP    +    +T    +  ++ S
Subjt:  ICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPTCTPYDSSVKLFKNTGDSVNQFEYAS

Query:  IIGSLRYAADCIRPNIAYAIGLLCR
        I+G+L+Y     RP+I+YA+ ++C+
Subjt:  IIGSLRYAADCIRPNIAYAIGLLCR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAAAAGGATTTAAAGTAAATGAAAGTGACAAATGTATCTACTATAAGACTGAAGGTAGGCTATGTATTATCATATGTCTATACGTAGATGACATGTTAATA
TTTGGATCAAACTTGCACGTCATAAATGATGTAAAATCTATGTTAAGTGCAAATTTTGACATGAAAGACCTGGGTGAAGCTGATGTAATCTTAGGCATCAAAATT
ACAAGAACTGAAAATGGAATTTCCTTAGATCAATCTCATTACATAGAAAAGATTCTAAAGAAGTACAACTACTTCGATAGTAAACCAACTTGTACACCTTATGAC
TCTAGTGTGAAATTATTCAAGAACACTGGTGACAGTGTTAACCAATTCGAGTATGCTAGTATCATAGGTAGTTTGAGGTATGCTGCTGATTGCATTAGACCAAAC
ATAGCTTACGCCATAGGATTACTATGTAGGTTTACCAACAGACTTAGTCTAGAACACTAG
mRNA sequenceShow/hide mRNA sequence
ATGTCAAAAGGATTTAAAGTAAATGAAAGTGACAAATGTATCTACTATAAGACTGAAGGTAGGCTATGTATTATCATATGTCTATACGTAGATGACATGTTAATA
TTTGGATCAAACTTGCACGTCATAAATGATGTAAAATCTATGTTAAGTGCAAATTTTGACATGAAAGACCTGGGTGAAGCTGATGTAATCTTAGGCATCAAAATT
ACAAGAACTGAAAATGGAATTTCCTTAGATCAATCTCATTACATAGAAAAGATTCTAAAGAAGTACAACTACTTCGATAGTAAACCAACTTGTACACCTTATGAC
TCTAGTGTGAAATTATTCAAGAACACTGGTGACAGTGTTAACCAATTCGAGTATGCTAGTATCATAGGTAGTTTGAGGTATGCTGCTGATTGCATTAGACCAAAC
ATAGCTTACGCCATAGGATTACTATGTAGGTTTACCAACAGACTTAGTCTAGAACACTAG
Protein sequenceShow/hide protein sequence
MSKGFKVNESDKCIYYKTEGRLCIIICLYVDDMLIFGSNLHVINDVKSMLSANFDMKDLGEADVILGIKITRTENGISLDQSHYIEKILKKYNYFDSKPTCTPYD
SSVKLFKNTGDSVNQFEYASIIGSLRYAADCIRPNIAYAIGLLCRFTNRLSLEH