; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0175231 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0175231
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionReverse transcriptase
Genome locationCMiso1.1chr06:32160739..32161425
RNA-Seq ExpressionCmc06g0175231
SyntenyCmc06g0175231
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0043227 - membrane-bounded organelle (cellular component)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036671.1 gag protease polyprotein [Cucumis melo var. makuwa]4.3e-126100Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLG
        VSVDPAKIEAVTGWTRPSTVSEVRSFLG
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLG

KAA0043391.1 pol protein [Cucumis melo var. makuwa]4.3e-126100Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLG
        VSVDPAKIEAVTGWTRPSTVSEVRSFLG
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLG

KAA0048687.1 pol protein [Cucumis melo var. makuwa]4.3e-126100Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLG
        VSVDPAKIEAVTGWTRPSTVSEVRSFLG
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLG

KAA0066266.1 pol protein [Cucumis melo var. makuwa]4.3e-126100Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLG
        VSVDPAKIEAVTGWTRPSTVSEVRSFLG
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLG

TYK01613.1 pol protein [Cucumis melo var. makuwa]4.3e-126100Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLG
        VSVDPAKIEAVTGWTRPSTVSEVRSFLG
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLG

TrEMBL top hitse value%identityAlignment
A0A5A7T538 Reverse transcriptase2.1e-126100Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLG
        VSVDPAKIEAVTGWTRPSTVSEVRSFLG
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLG

A0A5A7TP96 Reverse transcriptase2.1e-126100Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLG
        VSVDPAKIEAVTGWTRPSTVSEVRSFLG
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLG

A0A5A7U330 Reverse transcriptase2.1e-126100Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLG
        VSVDPAKIEAVTGWTRPSTVSEVRSFLG
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLG

A0A5A7VIT9 Reverse transcriptase2.1e-126100Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLG
        VSVDPAKIEAVTGWTRPSTVSEVRSFLG
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLG

A0A5D3BPI1 Reverse transcriptase2.1e-126100Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
        TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLG
        VSVDPAKIEAVTGWTRPSTVSEVRSFLG
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLG

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.66.4e-4840.09Show/hide
Query:  KELKVQLQELLDKGFIRPSVSPWGAPVLFV-KKKDGS----MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKT
        +E++ Q+Q++L++G IR S SP+ +P+  V KK+D S     R+ IDYR+LN++TV +R+P+P +D++  +L     F+ IDL  G+HQ+ +  E V KT
Subjt:  KELKVQLQELLDKGFIRPSVSPWGAPVLFV-KKKDGS----MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKT

Query:  AFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGV
        AF +++GHYE++ M FGL NAPA F   MN + R  L+   +V++DDI+++S +  EH + L +V + L    L  +  KCEF  ++ +FLGHV++  G+
Subjt:  AFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGV

Query:  SVDPAKIEAVTGWTRPSTVSEVRSFLG
          +P KIEA+  +  P+   E+++FLG
Subjt:  SVDPAKIEAVTGWTRPSTVSEVRSFLG

P0CT41 Transposon Tf2-12 polyprotein2.4e-4739.04Show/hide
Query:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK
        + P +++ +  ++ + L  G IR S +    PV+FV KK+G++R+ +DY+ LNK    N YPLP I+ L  ++QG+T+F+K+DL+S YH +R++  D  K
Subjt:  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPK

Query:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG
         AFR   G +E++VM +G++ APA F   +N +  E  ++ V+ ++DDILI+SK+E+EH +H++ VLQ L++  L    +KCEF   QV F+G+ +S+ G
Subjt:  TAFRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAG

Query:  VSVDPAKIEAVTGWTRPSTVSEVRSFLG
         +     I+ V  W +P    E+R FLG
Subjt:  VSVDPAKIEAVTGWTRPSTVSEVRSFLG

P20825 Retrovirus-related Pol polyprotein from transposon 2975.8e-4939.82Show/hide
Query:  ELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD-----GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA
        E++ Q+QE+L++G IR S SP+ +P   V KK         R+ IDYR+LN++T+ +RYP+P +D++  +L     F+ IDL  G+HQ+ + +E + KTA
Subjt:  ELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKD-----GSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTA

Query:  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVS
        F ++ GHYE++ M FGL NAPA F   MN + R  L+   +V++DDI+I+S +  EH   +++V   L D  L  +  KCEF  K+ +FLGH+V+  G+ 
Subjt:  FRSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVS

Query:  VDPAKIEAVTGWTRPSTVSEVRSFLG
         +P K++A+  +  P+   E+R+FLG
Subjt:  VDPAKIEAVTGWTRPSTVSEVRSFLG

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein1.1e-4743.24Show/hide
Query:  KELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSR
        +E+   +Q+LLD  FI PS SP  +PV+ V KKDG+ RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+ +DL SGYHQ+ ++ +D  KTAF + 
Subjt:  KELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSR

Query:  YGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPA
         G YE+ VM FGL NAP+ F   M   FR+    FV V++DDILI+S++  EH +HL  VL+ L++  L  K  KC+F  ++  FLG+ +    ++    
Subjt:  YGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPA

Query:  KIEAVTGWTRPSTVSEVRSFLG
        K  A+  +  P TV + + FLG
Subjt:  KIEAVTGWTRPSTVSEVRSFLG

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.1e-4743.24Show/hide
Query:  KELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSR
        +E+   +Q+LLD  FI PS SP  +PV+ V KKDG+ RLC+DYR LNK T+ + +PLPRID+L  ++  A +F+ +DL SGYHQ+ ++ +D  KTAF + 
Subjt:  KELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSR

Query:  YGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPA
         G YE+ VM FGL NAP+ F   M   FR+    FV V++DDILI+S++  EH +HL  VL+ L++  L  K  KC+F  ++  FLG+ +    ++    
Subjt:  YGHYEFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPA

Query:  KIEAVTGWTRPSTVSEVRSFLG
        K  A+  +  P TV + + FLG
Subjt:  KIEAVTGWTRPSTVSEVRSFLG

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein1.5e-1247.83Show/hide
Query:  HLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLG
        HL MVLQ    ++ YA   KC F   Q+++LG  H++S  GVS DPAK+EA+ GW  P   +E+R FLG
Subjt:  HLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLG--HVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCCCCGCAGAACTGAAAGAACTGAAGGTACAGTTGCAGGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAGTCTTGTTCGTTAA
GAAGAAGGACGGATCGATGCGTCTGTGCATTGACTATAGGGAGTTGAACAAAGTAACCGTAAAGAACAGATATCCCTTGCCCAGGATAGACGATCTATTTGACCAGTTAC
AGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGGTCGGGGTACCATCAGCTGAGAATTAAGGATGAGGATGTACCGAAGACAGCATTTCGTTCCAGATATGGACACTAT
GAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTTCTAGACACTTTTGTGATTGTGTTTATCGA
CGATATCTTGATATACTCCAAGACGGAGGCCGAACACGAGGAGCATTTACGCATGGTTTTGCAAACACTTCGGGATAATAAGTTGTACGCAAAGTTCTCGAAGTGCGAGT
TTTGGCTGAAGCAGGTGTCCTTTCTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCTGTAGATCCAGCTAAGATAGAGGCAGTCACCGGTTGGACCCGACCTTCCACAGTC
AGTGAGGTTCGTAGTTTTCTGGGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCCCCCGCAGAACTGAAAGAACTGAAGGTACAGTTGCAGGAATTGCTTGATAAGGGATTCATTCGACCGAGCGTGTCACCTTGGGGTGCGCCAGTCTTGTTCGTTAA
GAAGAAGGACGGATCGATGCGTCTGTGCATTGACTATAGGGAGTTGAACAAAGTAACCGTAAAGAACAGATATCCCTTGCCCAGGATAGACGATCTATTTGACCAGTTAC
AGGGAGCCACAGTGTTCTCTAAGATTGATCTTCGGTCGGGGTACCATCAGCTGAGAATTAAGGATGAGGATGTACCGAAGACAGCATTTCGTTCCAGATATGGACACTAT
GAGTTTATTGTGATGTCTTTTGGTTTGACGAATGCTCCGGCAGTGTTTATGGACTTGATGAACAGAGTGTTTAGGGAGTTTCTAGACACTTTTGTGATTGTGTTTATCGA
CGATATCTTGATATACTCCAAGACGGAGGCCGAACACGAGGAGCATTTACGCATGGTTTTGCAAACACTTCGGGATAATAAGTTGTACGCAAAGTTCTCGAAGTGCGAGT
TTTGGCTGAAGCAGGTGTCCTTTCTGGGCCACGTGGTTTCTAAGGCTGGAGTCTCTGTAGATCCAGCTAAGATAGAGGCAGTCACCGGTTGGACCCGACCTTCCACAGTC
AGTGAGGTTCGTAGTTTTCTGGGTTAG
Protein sequenceShow/hide protein sequence
MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDEDVPKTAFRSRYGHY
EFIVMSFGLTNAPAVFMDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWLKQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTV
SEVRSFLG