; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0175251 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0175251
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRibonuclease H
Genome locationCMiso1.1chr06:32194983..32196002
RNA-Seq ExpressionCmc06g0175251
SyntenyCmc06g0175251
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065293.1 uncharacterized protein E6C27_scaffold1023G00060 [Cucumis melo var. makuwa]4.2e-194100Show/hide
Query:  YNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTFGVS
        YNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTFGVS
Subjt:  YNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTFGVS

Query:  SRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPTPGR
        SRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPTPGR
Subjt:  SRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPTPGR

Query:  PLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQVLLS
        PLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQVLLS
Subjt:  PLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQVLLS

Query:  EFDIVYITRKAIKGSVIADCLAELPIEDYEPISR
        EFDIVYITRKAIKGSVIADCLAELPIEDYEPISR
Subjt:  EFDIVYITRKAIKGSVIADCLAELPIEDYEPISR

XP_031737561.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402452 [Cucumis sativus]7.1e-15779.17Show/hide
Query:  FSGYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTF
        FSGYNQIKMA ED+EKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHD+MHKEIEVYVDDM+AKS+  E H   L+KLF+ LRK+QLKLNP+KCTF
Subjt:  FSGYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTF

Query:  GVSSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPT
        G +S KLLGFIVS EGIKVDPDK++AI+D+  P+T+KEVR+FLGRLNY +RFISHLT TCEPI KLLRKN    WNEDC++AF+KIK YLQSPP+L+PP 
Subjt:  GVSSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPT

Query:  PGRPLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQV
        PGRPLI  LTV EGSMG VLGQHD +GKKE A+YYLSKKFT+YESKYS+LE+TCCAL WT  RLRQYMLY+TTWLISKMDPIKYIFEKPSLSGRIAKWQV
Subjt:  PGRPLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQV

Query:  LLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPIS
        LLSE+DIVY+T+KAIKGS +AD LA  P+ DYEP+S
Subjt:  LLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPIS

XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]7.1e-15779.17Show/hide
Query:  FSGYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTF
        FSGYNQIKMA ED+EKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHD+MHKEIEVYVDDM+AKS+  E H   L+KLF+ LRK+QLKLNP+KCTF
Subjt:  FSGYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTF

Query:  GVSSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPT
        G +S KLLGFIVS EGIKVDPDK++AI+D+  P+T+KEVR+FLGRLNY +RFISHLT TCEPI KLLRKN    WNEDC++AF+KIK YLQSPP+L+PP 
Subjt:  GVSSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPT

Query:  PGRPLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQV
        PGRPLI  LTV EGSMG VLGQHD +GKKE A+YYLSKKFT+YESKYS+LE+TCCAL WT  RLRQYMLY+TTWLISKMDPIKYIFEKPSLSGRIAKWQV
Subjt:  PGRPLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQV

Query:  LLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPIS
        LLSE+DIVY+T+KAIKGS +AD LA  P+ DYEP+S
Subjt:  LLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPIS

XP_031741698.1 uncharacterized protein LOC116403895 [Cucumis sativus]7.1e-15779.17Show/hide
Query:  FSGYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTF
        FSGYNQIKMA ED+EKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHD+MHKEIEVYVDDM+AKS+  E H   L+KLF+ LRK+QLKLNP+KCTF
Subjt:  FSGYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTF

Query:  GVSSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPT
        G +S KLLGFIVS EGIKVDPDK++AI+D+  P+T+KEVR+FLGRLNY +RFISHLT TCEPI KLLRKN    WNEDC++AF+KIK YLQSPP+L+PP 
Subjt:  GVSSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPT

Query:  PGRPLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQV
        PGRPLI  LTV EGSMG VLGQHD +GKKE A+YYLSKKFT+YESKYS+LE+TCCAL WT  RLRQYMLY+TTWLISKMDPIKYIFEKPSLSGRIAKWQV
Subjt:  PGRPLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQV

Query:  LLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPIS
        LLSE+DIVY+T+KAIKGS +AD LA  P+ DYEP+S
Subjt:  LLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPIS

XP_031742240.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116404130 [Cucumis sativus]4.1e-15778.93Show/hide
Query:  DFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCT
        DFSGYNQIKMA ED+EKTTFITLWGTFCYKVMPFGLKNAGATYQRA+VTLFHD+MHKEIEVYVDDM+AKS+  E H   L+KLF+ LRK+QLKLNP+KCT
Subjt:  DFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCT

Query:  FGVSSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPP
        FG +S KLLGFIVS EGIKVDPDK++AI+D+  P+T+KEVR+FLGRLNY +RFISHLT TCEPI KLLRKN    WNEDC++AF+KIK YLQSPP+L+PP
Subjt:  FGVSSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPP

Query:  TPGRPLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQ
         PGRPLI  LTV EGSMG VLGQHD +GKKE A+YYLSKKFT+YESKYS+LE+TCCAL WT  RLRQYMLY+TTWLISKMDPIKYIFEKPSLSGRIAKWQ
Subjt:  TPGRPLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQ

Query:  VLLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPIS
        VLLSE+DIVY+T+KAIKGS +AD LA  P+ DYEP+S
Subjt:  VLLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPIS

TrEMBL top hitse value%identityAlignment
A0A5A7VAU5 Uncharacterized protein2.1e-194100Show/hide
Query:  YNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTFGVS
        YNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTFGVS
Subjt:  YNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTFGVS

Query:  SRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPTPGR
        SRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPTPGR
Subjt:  SRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPTPGR

Query:  PLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQVLLS
        PLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQVLLS
Subjt:  PLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQVLLS

Query:  EFDIVYITRKAIKGSVIADCLAELPIEDYEPISR
        EFDIVYITRKAIKGSVIADCLAELPIEDYEPISR
Subjt:  EFDIVYITRKAIKGSVIADCLAELPIEDYEPISR

A0A5D3DMD2 Ribonuclease H1.5e-15277.31Show/hide
Query:  FSGYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTF
        FSGYNQIKMA ED+EKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHD+MHKEIEVYVDDM+AKS+ +E H  TL+KLF+ LRK+QLKLNP+KCTF
Subjt:  FSGYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTF

Query:  GVSSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPT
        G +  KLLGFIVS EGIKVDPDK++AI+++  PKT+KE+R FLGRLNY +RFIS+LT TCEPI KLLRKN    WNEDC++AF+KIK YLQSPP+L+PP 
Subjt:  GVSSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPT

Query:  PGRPLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQV
        PGRPLI  LTV E SMG VLGQHD +GKKE A+YYLSKKFT+YES+YS+LE+TCCAL WT  RLRQYMLY+TT LISKMD IKYIFEKPSLSGRIAKWQV
Subjt:  PGRPLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQV

Query:  LLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPI
        LLSE+DIVY+T+KAIKGS +AD LA  P+ DYEP+
Subjt:  LLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPI

A0A6J1DM29 LOW QUALITY PROTEIN: uncharacterized protein LOC1110222311.1e-15580.48Show/hide
Query:  FSGYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTF
        FSGYN+IKMAPED+EKTTFITLWGTFCYKVM FGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDM+AKSR  E+H + LRKLFE LRKFQLKLNP KCTF
Subjt:  FSGYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTF

Query:  GVSSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPT
        GV+S KLLGF+V +EGIKVDPDK++AI+++ PPKT KEVR FLGRLNY ARFISHLT TCEPI KLLRKN    W EDCQ AFDKIK Y QSPPILVPPT
Subjt:  GVSSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPT

Query:  PGRPLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQV
         GRPLI  LT+ E SMGCVLGQHD +G+KEQA+YYLSKKFT+ E+ YS +EKTCCALAW   RLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIA+WQV
Subjt:  PGRPLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQV

Query:  LLSEFDIVYITRKAIKGSVIADCLAELPIEDYE
        LLSE+DIVY+T+KAIKGS +AD LA+ PI DYE
Subjt:  LLSEFDIVYITRKAIKGSVIADCLAELPIEDYE

A0A6J1DZ90 Ribonuclease H1.6e-15478.51Show/hide
Query:  FSGYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTF
        FSG N IKMAPED+EKTTFITLWGTFCYKVMPFGLKN GATYQRAMVTLFHDLMHKEIEVYVDDM+AKS+  E+H   LRKLF+ LRKF+LKLNP KC F
Subjt:  FSGYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTF

Query:  GVSSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPT
        G ++ KLLGF+VS+EGIKVDPDK++AI+++ PP+TQKEVR FLGRLNY ARFISHLT TCEPI KLLRKN    W+EDCQ AF+KIK YLQ PPILVPPT
Subjt:  GVSSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPT

Query:  PGRPLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQV
        PGRPLI  LTV E SMGCVLGQHD +G+KEQA+YYLSKKFT+ E++YS +EKTCCALAW  +RLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIA+WQV
Subjt:  PGRPLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQV

Query:  LLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPI
        LLSE+DIVY+T+KAIKGS +AD LA+ PI DY P+
Subjt:  LLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPI

A0A6J1E2J7 Ribonuclease H7.1e-15579.1Show/hide
Query:  FSGYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTF
        FSGYNQIKMAPED+EKTT ITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDM+AKS+  E+H   LRKLF+ LRKF+LKLNP KC F
Subjt:  FSGYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTF

Query:  GVSSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPT
        G ++ KLLGF+VS+E IKVD DK++AI+++ PP+TQKEVR FLGRLNY AR ISHLT TCEPI KLLRKN    W+EDCQ AFDKIK YLQ PPILVPPT
Subjt:  GVSSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPT

Query:  PGRPLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQV
        PGRPLI  LTV E SMGCVLGQHD +G+KEQA+YYLSKKFT+ E++YS +EKTCCALAW T+RLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIA+WQV
Subjt:  PGRPLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQV

Query:  LLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPI
        LLSE+DIVY+TRKAIKGS +AD LA+ PI DY P+
Subjt:  LLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPI

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.64.8e-4733.73Show/hide
Query:  GYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTFGV
        G++QI+M PE   KT F T  G + Y  MPFGLKNA AT+QR M  +   L++K   VY+DD++  S   ++H+ +L  +FE L K  LKL   KC F  
Subjt:  GYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTFGV

Query:  SSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKN-EICHWNEDCQKAFDKIKDYLQSPPILVPPTP
             LG +++ +GIK +P+KI+AI     P   KE+++FLG   Y  +FI +     +P+ K L+KN +I   N +   AF K+K  +   PIL  P  
Subjt:  SSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKN-EICHWNEDCQKAFDKIKDYLQSPPILVPPTP

Query:  GRPLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQVL
         +         + ++G VL Q          + Y+S+    +E  YS +EK   A+ W T+  R Y+L     + S   P+ +++     + ++ +W+V 
Subjt:  GRPLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQVL

Query:  LSEFDIVYITRKAIKG--SVIADCLAELPIED
        LSEFD      K IKG  + +AD L+ + +E+
Subjt:  LSEFDIVYITRKAIKG--SVIADCLAELPIED

P0CT34 Transposon Tf2-1 polyprotein9.9e-3729.02Show/hide
Query:  SGYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTFG
        S Y+ I++   D+ K  F    G F Y VMP+G+  A A +Q  + T+  +     +  Y+DD++  S+ E +HV  ++ + + L+   L +N AKC F 
Subjt:  SGYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTFG

Query:  VSSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPTP
         S  K +G+ +S +G     + I  ++  + PK +KE+R FLG +NY  +FI   +Q   P+  LL+K+    W     +A + IK  L SPP+L     
Subjt:  VSSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPTP

Query:  GRPLIFCLTVKEGSMGCVLGQ-HDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRI-----
         + ++      + ++G VL Q HD    K   V Y S K +  +  YS+ +K   A+  + +  R Y       L S ++P K + +  +L GRI     
Subjt:  GRPLIFCLTVKEGSMGCVLGQ-HDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRI-----

Query:  ------AKWQVLLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPISR
              A+WQ+ L +F+   I  +    + IAD L+ + +++ EPI +
Subjt:  ------AKWQVLLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPISR

P0CT41 Transposon Tf2-12 polyprotein9.9e-3729.02Show/hide
Query:  SGYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTFG
        S Y+ I++   D+ K  F    G F Y VMP+G+  A A +Q  + T+  +     +  Y+DD++  S+ E +HV  ++ + + L+   L +N AKC F 
Subjt:  SGYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTFG

Query:  VSSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPTP
         S  K +G+ +S +G     + I  ++  + PK +KE+R FLG +NY  +FI   +Q   P+  LL+K+    W     +A + IK  L SPP+L     
Subjt:  VSSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPTP

Query:  GRPLIFCLTVKEGSMGCVLGQ-HDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRI-----
         + ++      + ++G VL Q HD    K   V Y S K +  +  YS+ +K   A+  + +  R Y       L S ++P K + +  +L GRI     
Subjt:  GRPLIFCLTVKEGSMGCVLGQ-HDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRI-----

Query:  ------AKWQVLLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPISR
              A+WQ+ L +F+   I  +    + IAD L+ + +++ EPI +
Subjt:  ------AKWQVLLSEFDIVYITRKAIKGSVIADCLAELPIEDYEPISR

P20825 Retrovirus-related Pol polyprotein from transposon 2973.0e-4131.93Show/hide
Query:  GYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTFGV
        G++QI+M  E   KT F T  G + Y  MPFGL+NA AT+QR M  +   L++K   VY+DD++  S    +H+ +++ +F  L    LKL   KC F  
Subjt:  GYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTFGV

Query:  SSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRK-NEICHWNEDCQKAFDKIKDYLQSPPILVPPTP
             LG IV+ +GIK +P K++AIV    P   KE+R+FLG   Y  +FI +     +P+   L+K  +I     +  +AF+K+K  +   PIL  P  
Subjt:  SSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRK-NEICHWNEDCQKAFDKIKDYLQSPPILVPPTP

Query:  GRPLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQVL
         +  +        ++G VL Q+         + ++S+   ++E  YS +EK   A+ W T+  R Y+L     + S   P++++        ++ +W+V 
Subjt:  GRPLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQVL

Query:  LSE--FDIVYITRKAIKGSVIADCLAELPIED
        LSE  F I YI  K    + +AD L+ + IE+
Subjt:  LSE--FDIVYITRKAIKGSVIADCLAELPIED

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.8e-3828.91Show/hide
Query:  SGYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTFG
        SG++QI M   D  KT F TL G + +  +PFGLKNA A +QR +  +  + + K   VY+DD++  S   + H   LR +   L K  L++N  K  F 
Subjt:  SGYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTFG

Query:  VSSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLR-----------KNEICHWNEDCQKAFDKIKDYL
         +  + LG+IV+ +GIK DP K++AI ++ PP + KE++ FLG  +Y  +FI    +  +P+  L R                  +E   ++F+ +K  L
Subjt:  VSSRKLLGFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLR-----------KNEICHWNEDCQKAFDKIKDYL

Query:  QSPPILVPPTPGRPLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYML-YYTTWLISKMDPIKYIFEKP
         S  IL  P   +P          ++G VL Q D    +++ + Y+S+     E  Y+ +EK   A+ W+   LR Y+    T  + +   P+ +     
Subjt:  QSPPILVPPTPGRPLIFCLTVKEGSMGCVLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYML-YYTTWLISKMDPIKYIFEKP

Query:  SLSGRIAKWQVLLSEFDIVYITRKAIKGSVIADCLAELP
        + + ++ +W+  + E++   I +   K +V+AD L+ +P
Subjt:  SLSGRIAKWQVLLSEFDIVYITRKAIKGSVIADCLAELP

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein4.6e-1332.31Show/hide
Query:  LRKLFECLRKFQLKLNPAKCTFGVSSRKLLG--FIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWN
        L  + +   + Q   N  KC FG      LG   I+S EG+  DP K++A+V    PK   E+R FLG   Y  RF+ +  +   P+ +LL+KN +  W 
Subjt:  LRKLFECLRKFQLKLNPAKCTFGVSSRKLLG--FIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWN

Query:  EDCQKAFDKIKDYLQSPPILVPPTPGRPLI
        E    AF  +K  + + P+L  P    P +
Subjt:  EDCQKAFDKIKDYLQSPPILVPPTPGRPLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTTTCAGGATACAACCAGATCAAAATGGCTCCAGAAGATCAAGAAAAAACGACGTTCATCACCTTGTGGGGAACGTTCTGCTACAAAGTAATGCCTTTTGGGTT
AAAAAATGCAGGAGCAACTTATCAGAGAGCGATGGTTACATTATTCCACGACTTGATGCATAAAGAAATTGAGGTTTATGTTGATGATATGGTTGCCAAGTCCAGACTCG
AAGAAAAGCATGTGGTTACCCTTCGTAAGCTTTTTGAATGTTTGCGAAAGTTCCAACTAAAGTTGAATCCAGCAAAATGCACATTTGGAGTTTCTTCTAGGAAGTTATTG
GGTTTCATTGTTAGTCGTGAAGGCATCAAGGTGGACCCAGACAAAATCCAGGCTATAGTTGACTTAAGGCCACCAAAAACACAAAAGGAGGTTAGAAGTTTTTTAGGAAG
GTTGAATTACACTGCACGGTTTATTTCACACCTTACTCAAACTTGTGAGCCAATTTTAAAATTGCTTCGCAAAAATGAGATTTGTCATTGGAATGAAGATTGCCAAAAAG
CTTTTGACAAGATCAAAGACTACTTGCAAAGCCCTCCTATCCTCGTTCCGCCAACTCCAGGACGACCTTTGATCTTCTGCTTGACAGTGAAGGAGGGGTCAATGGGATGT
GTGCTGGGACAACATGACTCTACTGGAAAGAAAGAGCAAGCTGTCTATTATTTGAGCAAAAAGTTCACAAATTATGAATCAAAATACTCATTGTTGGAAAAAACATGTTG
TGCTTTAGCATGGACGACTCAAAGATTAAGACAGTATATGTTGTACTATACTACATGGCTTATTTCAAAAATGGATCCTATAAAATACATTTTTGAAAAGCCATCCTTAT
CAGGAAGGATAGCTAAGTGGCAAGTGTTGTTATCAGAGTTTGATATCGTTTACATTACTAGAAAGGCCATAAAGGGTAGTGTGATTGCTGATTGCTTAGCGGAGTTACCA
ATTGAGGACTATGAGCCCATTTCCAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGGATTTTTCAGGATACAACCAGATCAAAATGGCTCCAGAAGATCAAGAAAAAACGACGTTCATCACCTTGTGGGGAACGTTCTGCTACAAAGTAATGCCTTTTGGGTT
AAAAAATGCAGGAGCAACTTATCAGAGAGCGATGGTTACATTATTCCACGACTTGATGCATAAAGAAATTGAGGTTTATGTTGATGATATGGTTGCCAAGTCCAGACTCG
AAGAAAAGCATGTGGTTACCCTTCGTAAGCTTTTTGAATGTTTGCGAAAGTTCCAACTAAAGTTGAATCCAGCAAAATGCACATTTGGAGTTTCTTCTAGGAAGTTATTG
GGTTTCATTGTTAGTCGTGAAGGCATCAAGGTGGACCCAGACAAAATCCAGGCTATAGTTGACTTAAGGCCACCAAAAACACAAAAGGAGGTTAGAAGTTTTTTAGGAAG
GTTGAATTACACTGCACGGTTTATTTCACACCTTACTCAAACTTGTGAGCCAATTTTAAAATTGCTTCGCAAAAATGAGATTTGTCATTGGAATGAAGATTGCCAAAAAG
CTTTTGACAAGATCAAAGACTACTTGCAAAGCCCTCCTATCCTCGTTCCGCCAACTCCAGGACGACCTTTGATCTTCTGCTTGACAGTGAAGGAGGGGTCAATGGGATGT
GTGCTGGGACAACATGACTCTACTGGAAAGAAAGAGCAAGCTGTCTATTATTTGAGCAAAAAGTTCACAAATTATGAATCAAAATACTCATTGTTGGAAAAAACATGTTG
TGCTTTAGCATGGACGACTCAAAGATTAAGACAGTATATGTTGTACTATACTACATGGCTTATTTCAAAAATGGATCCTATAAAATACATTTTTGAAAAGCCATCCTTAT
CAGGAAGGATAGCTAAGTGGCAAGTGTTGTTATCAGAGTTTGATATCGTTTACATTACTAGAAAGGCCATAAAGGGTAGTGTGATTGCTGATTGCTTAGCGGAGTTACCA
ATTGAGGACTATGAGCCCATTTCCAGATGA
Protein sequenceShow/hide protein sequence
MDFSGYNQIKMAPEDQEKTTFITLWGTFCYKVMPFGLKNAGATYQRAMVTLFHDLMHKEIEVYVDDMVAKSRLEEKHVVTLRKLFECLRKFQLKLNPAKCTFGVSSRKLL
GFIVSREGIKVDPDKIQAIVDLRPPKTQKEVRSFLGRLNYTARFISHLTQTCEPILKLLRKNEICHWNEDCQKAFDKIKDYLQSPPILVPPTPGRPLIFCLTVKEGSMGC
VLGQHDSTGKKEQAVYYLSKKFTNYESKYSLLEKTCCALAWTTQRLRQYMLYYTTWLISKMDPIKYIFEKPSLSGRIAKWQVLLSEFDIVYITRKAIKGSVIADCLAELP
IEDYEPISR