; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0177121 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0177121
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrotransposon protein
Genome locationCMiso1.1chr06:33899707..33900659
RNA-Seq ExpressionCmc06g0177121
SyntenyCmc06g0177121
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016787 - hydrolase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR027806 - Harbinger transposase-derived nuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0034843.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-14698.07Show/hide
Query:  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE
        MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREF RSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE
Subjt:  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE

Query:  CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG
        CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGV DTKGDFVYVL GWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG
Subjt:  CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG

Query:  FLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY
        FLAPYRGQRYHLQEWRGP+N PSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY
Subjt:  FLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY

KAA0035620.1 retrotransposon protein [Cucumis melo var. makuwa]2.7e-14898.84Show/hide
Query:  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE
        MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREF RSGETISRHFNMVLLAVIRLH+ELLKKPQPVPNE
Subjt:  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE

Query:  CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG
        CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG
Subjt:  CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG

Query:  FLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY
        FLAPYRGQRYHLQEWRGPEN PSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY
Subjt:  FLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY

KAA0046727.1 retrotransposon protein [Cucumis melo var. makuwa]9.4e-14999.23Show/hide
Query:  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE
        MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREF RSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE
Subjt:  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE

Query:  CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG
        CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG
Subjt:  CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG

Query:  FLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY
        FLAPYRGQRYHLQEWRGPEN PSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY
Subjt:  FLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY

KAA0048361.1 retrotransposon protein [Cucumis melo var. makuwa]2.6e-14697.68Show/hide
Query:  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE
        MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREF RSGETISRHFNMVLLAVIRLH+ELLKKPQPVPNE
Subjt:  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE

Query:  CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG
        CTDQRW+WFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEG AADSRILRDALSRPNRLKVPKGYYYLVDAGY NAEG
Subjt:  CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG

Query:  FLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY
        FLAPYRGQRYHLQEWRGPEN PSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY
Subjt:  FLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY

KAA0051057.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-14697.68Show/hide
Query:  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE
        MIHGSDLVC QSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHIL HDVKNRVIQREF RSGETISRHFNMVLLAVIRLH+ELLKKPQPVPNE
Subjt:  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE

Query:  CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG
        CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG
Subjt:  CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG

Query:  FLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY
        FLAPYRGQRYHLQEWRGPEN PSTSKEFFNMKHS ARNVIERAFGVLKGRWAILRGKSY
Subjt:  FLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY

TrEMBL top hitse value%identityAlignment
A0A5A7SWD8 Retrotransposon protein7.3e-14798.07Show/hide
Query:  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE
        MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREF RSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE
Subjt:  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE

Query:  CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG
        CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGV DTKGDFVYVL GWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG
Subjt:  CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG

Query:  FLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY
        FLAPYRGQRYHLQEWRGP+N PSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY
Subjt:  FLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY

A0A5A7TXW1 Retrotransposon protein4.5e-14999.23Show/hide
Query:  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE
        MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREF RSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE
Subjt:  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE

Query:  CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG
        CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG
Subjt:  CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG

Query:  FLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY
        FLAPYRGQRYHLQEWRGPEN PSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY
Subjt:  FLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY

A0A5A7U476 Retrotransposon protein1.2e-14697.68Show/hide
Query:  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE
        MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREF RSGETISRHFNMVLLAVIRLH+ELLKKPQPVPNE
Subjt:  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE

Query:  CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG
        CTDQRW+WFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEG AADSRILRDALSRPNRLKVPKGYYYLVDAGY NAEG
Subjt:  CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG

Query:  FLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY
        FLAPYRGQRYHLQEWRGPEN PSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY
Subjt:  FLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY

A0A5A7U9H2 Retrotransposon protein7.3e-14797.68Show/hide
Query:  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE
        MIHGSDLVC QSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHIL HDVKNRVIQREF RSGETISRHFNMVLLAVIRLH+ELLKKPQPVPNE
Subjt:  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE

Query:  CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG
        CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG
Subjt:  CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG

Query:  FLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY
        FLAPYRGQRYHLQEWRGPEN PSTSKEFFNMKHS ARNVIERAFGVLKGRWAILRGKSY
Subjt:  FLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY

A0A5D3BDX0 Retrotransposon protein1.3e-14898.84Show/hide
Query:  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE
        MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREF RSGETISRHFNMVLLAVIRLH+ELLKKPQPVPNE
Subjt:  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE

Query:  CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG
        CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG
Subjt:  CTDQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEG

Query:  FLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY
        FLAPYRGQRYHLQEWRGPEN PSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY
Subjt:  FLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSY

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein1.9e-3837.11Show/hide
Query:  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKP-----QPVPNEC-T
        C Q  RM   CF  LC++L+T   L  T  + +EE VAMFL I  H+   R +   F R+ ET+ R F  VL A   L  + ++ P       +P     
Subjt:  CRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKP-----QPVPNEC-T

Query:  DQR-WRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKG-YYYLVDAGYPNAEG
        DQR W +F   +GA+DGT++ V V    +  Y  R    + N++ +CD K  F Y+  G  GS  D+ +L+ A    +   +P    YYLVD+GYPN +G
Subjt:  DQR-WRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKG-YYYLVDAGYPNAEG

Query:  FLAPYRGQ-----RYHL-QEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGR
         LAPYR       RYH+ Q + GP   P    E FN  H+S R+VIER F + K +
Subjt:  FLAPYRGQ-----RYHL-QEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGR

AT5G28730.1 unknown protein1.0e-2033.49Show/hide
Query:  IHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNEC
        I+ +++ C+   RM    F  LC +L    GL S+  + ++E VA+FL I A +   R I   F  + ETI R F+ VL A+ RL  E + +P+ V    
Subjt:  IHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNEC

Query:  TDQRWRWFENCLGALDGTYIKVNVPASDRARY----RTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKV-PKGYYYLVDAGYP
          +  R   N L               D  RY        G  + NVL +CD    F Y   G  GS  D+R+L  A+S      V P   YYLVD+GY 
Subjt:  TDQRWRWFENCLGALDGTYIKVNVPASDRARY----RTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKV-PKGYYYLVDAGYP

Query:  NAEGFLAPYRGQRYHLQE
        N  G+LAPYR +    Q+
Subjt:  NAEGFLAPYRGQRYHLQE

AT5G28950.1 unknown protein1.4e-1738.94Show/hide
Query:  WFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSR-PNRLKVP---KGYYYLVDAGYPNAEGFLA
        +F++C+GA+D T+I   V       +R RKG+++ N+L  C+   +F+YVL+GWEGSA DS++L DAL+R  NRL VP   +    +V+    N +  L 
Subjt:  WFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSR-PNRLKVP---KGYYYLVDAGYPNAEGFLA

Query:  PYRGQRYHLQEWR
            QR +  +WR
Subjt:  PYRGQRYHLQEWR

AT5G35695.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.1e-2553.92Show/hide
Query:  FVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAI
        F+YVL+GWEGSA DSR+L DAL +          +YLVD G+ N   FLAP+RG RYHLQE+ G    P T  E FN++H S RNVIER FG+ K R+AI
Subjt:  FVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAI

Query:  LR
         +
Subjt:  LR

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)8.4e-4740Show/hide
Query:  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE
        +++G +  C ++ RMD+  F  LC LL+T   L  T  + +E  +A+FL I+ H+++ R +Q  F  SGETISRHFN VL AVI +  +     QP  N 
Subjt:  MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNE

Query:  CT-DQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAE
         T +    +F++C+G +D  +I V V   ++  +R   G +  NVL        F YVLAGWEGSA+D ++L  AL+R N+L+VP+G YY+VD  YPN  
Subjt:  CT-DQRWRWFENCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAE

Query:  GFLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL
        GF+APY G            N+   +KE FN +H      I R FG LK R+ IL
Subjt:  GFLAPYRGQRYHLQEWRGPENTPSTSKEFFNMKHSSARNVIERAFGVLKGRWAIL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCATGGGTCAGACCTTGTCTGTCGCCAAAGTACGAGAATGGACCGAAGATGTTTCGCCATTCTGTGTCACCTACTGAGGACCATTGCTGGACTAACGTCGACGGA
AGTCGTCGATGTTGAGGAGATGGTAGCAATGTTCCTCCACATTCTTGCGCACGATGTGAAAAATCGTGTCATTCAACGAGAGTTCACGCGGTCGGGCGAGACAATTTCCC
GCCATTTCAACATGGTCTTGTTGGCTGTCATTCGACTTCATGACGAGCTGTTGAAAAAACCACAACCGGTGCCTAATGAATGCACAGATCAAAGATGGAGGTGGTTTGAG
AATTGCCTAGGTGCATTAGATGGCACGTACATAAAAGTCAACGTTCCAGCAAGTGACCGGGCTAGGTATAGAACACGCAAGGGGGAGGTGGCCACAAATGTACTTGGCGT
GTGTGACACGAAAGGAGATTTTGTTTACGTACTTGCCGGTTGGGAAGGATCAGCTGCGGACTCACGCATCCTCCGTGATGCCCTTTCAAGACCTAATAGGCTTAAGGTGC
CCAAGGGCTATTACTACTTGGTTGATGCCGGGTACCCAAATGCGGAGGGTTTCCTGGCACCATACAGAGGGCAACGCTATCACTTACAAGAATGGCGTGGCCCTGAAAAT
ACACCTTCAACGTCCAAAGAGTTCTTCAATATGAAACATTCTTCTGCTCGTAATGTAATCGAAAGAGCATTCGGTGTCTTGAAGGGTCGATGGGCGATACTGCGGGGAAA
GTCATACTTATTGGTAATTTAA
mRNA sequenceShow/hide mRNA sequence
ATGATTCATGGGTCAGACCTTGTCTGTCGCCAAAGTACGAGAATGGACCGAAGATGTTTCGCCATTCTGTGTCACCTACTGAGGACCATTGCTGGACTAACGTCGACGGA
AGTCGTCGATGTTGAGGAGATGGTAGCAATGTTCCTCCACATTCTTGCGCACGATGTGAAAAATCGTGTCATTCAACGAGAGTTCACGCGGTCGGGCGAGACAATTTCCC
GCCATTTCAACATGGTCTTGTTGGCTGTCATTCGACTTCATGACGAGCTGTTGAAAAAACCACAACCGGTGCCTAATGAATGCACAGATCAAAGATGGAGGTGGTTTGAG
AATTGCCTAGGTGCATTAGATGGCACGTACATAAAAGTCAACGTTCCAGCAAGTGACCGGGCTAGGTATAGAACACGCAAGGGGGAGGTGGCCACAAATGTACTTGGCGT
GTGTGACACGAAAGGAGATTTTGTTTACGTACTTGCCGGTTGGGAAGGATCAGCTGCGGACTCACGCATCCTCCGTGATGCCCTTTCAAGACCTAATAGGCTTAAGGTGC
CCAAGGGCTATTACTACTTGGTTGATGCCGGGTACCCAAATGCGGAGGGTTTCCTGGCACCATACAGAGGGCAACGCTATCACTTACAAGAATGGCGTGGCCCTGAAAAT
ACACCTTCAACGTCCAAAGAGTTCTTCAATATGAAACATTCTTCTGCTCGTAATGTAATCGAAAGAGCATTCGGTGTCTTGAAGGGTCGATGGGCGATACTGCGGGGAAA
GTCATACTTATTGGTAATTTAA
Protein sequenceShow/hide protein sequence
MIHGSDLVCRQSTRMDRRCFAILCHLLRTIAGLTSTEVVDVEEMVAMFLHILAHDVKNRVIQREFTRSGETISRHFNMVLLAVIRLHDELLKKPQPVPNECTDQRWRWFE
NCLGALDGTYIKVNVPASDRARYRTRKGEVATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDALSRPNRLKVPKGYYYLVDAGYPNAEGFLAPYRGQRYHLQEWRGPEN
TPSTSKEFFNMKHSSARNVIERAFGVLKGRWAILRGKSYLLVI