; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc06g0177231 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0177231
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr06:33985277..33986443
RNA-Seq ExpressionCmc06g0177231
SyntenyCmc06g0177231
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0005524 - ATP binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041085.1 uncharacterized protein E6C27_scaffold477G00590 [Cucumis melo var. makuwa]5.5e-19888.92Show/hide
Query:  MIKSWGEQDEGFFIECRALEVEGLIGTKCCKADVIPEVVSPVLSVLDQFMDVFEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREM
        MIKSWGEQDEGFFIECRALEVEGLI TKCCKADVIPEVVSPVLSVLDQFMDVFEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREM
Subjt:  MIKSWGEQDEGFFIECRALEVEGLIGTKCCKADVIPEVVSPVLSVLDQFMDVFEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREM

Query:  LSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMP
        LSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMP
Subjt:  LSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMP

Query:  FGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSKNVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPK
        FGLINAPTTFQALMNAIFKPHLRK                                       KKCSFAQ KVEYLGHVISGEGAEVDLEKIKSI EWPK
Subjt:  FGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSKNVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPK

Query:  PTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVLI
        PTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVG VLI
Subjt:  PTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVLI

KAA0062752.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.1e-16572.16Show/hide
Query:  MIKSWGEQDEGFFIECRALEVEGLIGTKCCKADVIPEVVSPVLSVLDQFMDVFEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREM
        M+K+W E+D GF IECR+L+V  + G + C  +        + SV+ Q+ DVF+WP+KLPP+R+IEH IH+KEGTDPINVRPYRY +HQ+ EMEKLV+EM
Subjt:  MIKSWGEQDEGFFIECRALEVEGLIGTKCCKADVIPEVVSPVLSVLDQFMDVFEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREM

Query:  LSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMP
        L SGVI+PSTSP+SS VLLVKKKDGSW F VDYRAVNN+TIP+KFPIPVVEELFDELCGA+L SKIDLKSGYH I+MADEDIE TAFRTHEGHYEFLVMP
Subjt:  LSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMP

Query:  FGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSKNVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPK
        FGL NAP TFQALMNAIFKP LRKF+LVFF DIL+YS+N  EHV H+E+V   LR+HELYAN+KKC FAQ K+EYLGHVIS EG  VD EKIK+I +WP+
Subjt:  FGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSKNVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPK

Query:  PTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVLI
        PTN++E RG LGLTGYYR FV  YG+IAAPLTQLLKKGGF W EEA +AF +LK AM+SLPVL LP+FN+ FEIE +ASGYGVG VL+
Subjt:  PTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVLI

KAA0064684.1 tetratricopeptide repeat protein SKI3 [Cucumis melo var. makuwa]5.1e-16774.23Show/hide
Query:  MIKSWGEQDEGFFIECRALEVEGLIGTKCCKADVIPEVVSPVLSVLDQFMDVFEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREM
        MIK+WG +DEGF +ECRA+E   L     C A +  EV S + +VL QF DVFEWP+KLPP+R IEH IHLK+G DPINVRPYRY + QKEEMEKLV+EM
Subjt:  MIKSWGEQDEGFFIECRALEVEGLIGTKCCKADVIPEVVSPVLSVLDQFMDVFEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREM

Query:  LSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMP
        L SGVI+P+ SPFSS VLLVKKKDGSW F VDYRAVNN+TIP+KFP PVVEELFDEL GA++ SKIDLK  YH I+M ++DIE TAFRTHEGHYEFLVMP
Subjt:  LSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMP

Query:  FGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSKNVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPK
        FGL NAP TFQALMN IFKP LRKF+LVFF DILIYSKN  +HV HM  V S LR+HELYAN+KKCSFAQ KVEYLGH++SGEG EVD EKIKSI +WPK
Subjt:  FGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSKNVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPK

Query:  PTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVLI
        PTNI+EVRG LGLTGYYR FVQ YG+IAAPLTQLLKKGG+KW+ EAE+AF +LK+AM SLP+L LP+FNQPFEI+T+ASGYGVG VLI
Subjt:  PTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVLI

KAA0067574.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]8.1e-16572.68Show/hide
Query:  MIKSWGEQDEGFFIECRALEVEGLIGTKCCKADVIPEVVSPVLSVLDQFMDVFEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREM
        MIK+WG++D GF IECR++EVE L    C           P+ SV+ Q+ DVFEWP+KLPP+R+IEH I +KEGT+PINVRP RY +H+KEEMEKLV+EM
Subjt:  MIKSWGEQDEGFFIECRALEVEGLIGTKCCKADVIPEVVSPVLSVLDQFMDVFEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREM

Query:  LSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMP
        L+SGVI+PSTSP+SS +LLVKKKD SW F VDYRAVNN+TIP+KFPIPVVEELFDELCGASL SKIDLKSGYH I+M D+DIE TAFRTHEGHYEFLVMP
Subjt:  LSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMP

Query:  FGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSKNVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPK
        FGL NAP TFQAL+N IFKP LRKF+LVFF DILIYSKN  +HV HM  V S LR+HELYAN+KKC+FAQ K+EYLGHVISGEG  VD EKIK+I  WP+
Subjt:  FGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSKNVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPK

Query:  PTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVLI
        PTNI+E+RG LGLTGYYR FV  YG+IAAPLTQ LKKGG+KW EEA +AF KLK AM+SLP+L LP+FNQPFEIET+ASG+GVG VL+
Subjt:  PTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVLI

TYK08827.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.1e-16572.16Show/hide
Query:  MIKSWGEQDEGFFIECRALEVEGLIGTKCCKADVIPEVVSPVLSVLDQFMDVFEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREM
        M+K+W E+D GF IECR+L+V  + G + C  +        + SV+ Q+ DVF+WP+KLPP+R+IEH IH+KEGTDPINVRPYRY +HQ+ EMEKLV+EM
Subjt:  MIKSWGEQDEGFFIECRALEVEGLIGTKCCKADVIPEVVSPVLSVLDQFMDVFEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREM

Query:  LSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMP
        L SGVI+PSTSP+SS VLLVKKKDGSW F VDYRAVNN+TIP+KFPIPVVEELFDELCGA+L SKIDLKSGYH I+MADEDIE TAFRTHEGHYEFLVMP
Subjt:  LSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMP

Query:  FGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSKNVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPK
        FGL NAP TFQALMNAIFKP LRKF+LVFF DIL+YS+N  EHV H+E+V   LR+HELYAN+KKC FAQ K+EYLGHVIS EG  VD EKIK+I +WP+
Subjt:  FGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSKNVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPK

Query:  PTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVLI
        PTN++E RG LGLTGYYR FV  YG+IAAPLTQLLKKGGF W EEA +AF +LK AM+SLPVL LP+FN+ FEIE +ASGYGVG VL+
Subjt:  PTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVLI

TrEMBL top hitse value%identityAlignment
A0A5A7TI54 Uncharacterized protein2.7e-19888.92Show/hide
Query:  MIKSWGEQDEGFFIECRALEVEGLIGTKCCKADVIPEVVSPVLSVLDQFMDVFEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREM
        MIKSWGEQDEGFFIECRALEVEGLI TKCCKADVIPEVVSPVLSVLDQFMDVFEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREM
Subjt:  MIKSWGEQDEGFFIECRALEVEGLIGTKCCKADVIPEVVSPVLSVLDQFMDVFEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREM

Query:  LSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMP
        LSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMP
Subjt:  LSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMP

Query:  FGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSKNVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPK
        FGLINAPTTFQALMNAIFKPHLRK                                       KKCSFAQ KVEYLGHVISGEGAEVDLEKIKSI EWPK
Subjt:  FGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSKNVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPK

Query:  PTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVLI
        PTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVG VLI
Subjt:  PTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVLI

A0A5A7V3E4 Ty3/gypsy retrotransposon protein1.0e-16572.16Show/hide
Query:  MIKSWGEQDEGFFIECRALEVEGLIGTKCCKADVIPEVVSPVLSVLDQFMDVFEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREM
        M+K+W E+D GF IECR+L+V  + G + C  +        + SV+ Q+ DVF+WP+KLPP+R+IEH IH+KEGTDPINVRPYRY +HQ+ EMEKLV+EM
Subjt:  MIKSWGEQDEGFFIECRALEVEGLIGTKCCKADVIPEVVSPVLSVLDQFMDVFEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREM

Query:  LSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMP
        L SGVI+PSTSP+SS VLLVKKKDGSW F VDYRAVNN+TIP+KFPIPVVEELFDELCGA+L SKIDLKSGYH I+MADEDIE TAFRTHEGHYEFLVMP
Subjt:  LSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMP

Query:  FGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSKNVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPK
        FGL NAP TFQALMNAIFKP LRKF+LVFF DIL+YS+N  EHV H+E+V   LR+HELYAN+KKC FAQ K+EYLGHVIS EG  VD EKIK+I +WP+
Subjt:  FGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSKNVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPK

Query:  PTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVLI
        PTN++E RG LGLTGYYR FV  YG+IAAPLTQLLKKGGF W EEA +AF +LK AM+SLPVL LP+FN+ FEIE +ASGYGVG VL+
Subjt:  PTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVLI

A0A5A7VBR1 Tetratricopeptide repeat protein SKI32.4e-16774.23Show/hide
Query:  MIKSWGEQDEGFFIECRALEVEGLIGTKCCKADVIPEVVSPVLSVLDQFMDVFEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREM
        MIK+WG +DEGF +ECRA+E   L     C A +  EV S + +VL QF DVFEWP+KLPP+R IEH IHLK+G DPINVRPYRY + QKEEMEKLV+EM
Subjt:  MIKSWGEQDEGFFIECRALEVEGLIGTKCCKADVIPEVVSPVLSVLDQFMDVFEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREM

Query:  LSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMP
        L SGVI+P+ SPFSS VLLVKKKDGSW F VDYRAVNN+TIP+KFP PVVEELFDEL GA++ SKIDLK  YH I+M ++DIE TAFRTHEGHYEFLVMP
Subjt:  LSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMP

Query:  FGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSKNVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPK
        FGL NAP TFQALMN IFKP LRKF+LVFF DILIYSKN  +HV HM  V S LR+HELYAN+KKCSFAQ KVEYLGH++SGEG EVD EKIKSI +WPK
Subjt:  FGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSKNVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPK

Query:  PTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVLI
        PTNI+EVRG LGLTGYYR FVQ YG+IAAPLTQLLKKGG+KW+ EAE+AF +LK+AM SLP+L LP+FNQPFEI+T+ASGYGVG VLI
Subjt:  PTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVLI

A0A5D3BBH4 Ty3/gypsy retrotransposon protein3.9e-16572.68Show/hide
Query:  MIKSWGEQDEGFFIECRALEVEGLIGTKCCKADVIPEVVSPVLSVLDQFMDVFEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREM
        MIK+WG++D GF IECR++EVE L    C           P+ SV+ Q+ DVFEWP+KLPP+R+IEH I +KEGT+PINVRP RY +H+KEEMEKLV+EM
Subjt:  MIKSWGEQDEGFFIECRALEVEGLIGTKCCKADVIPEVVSPVLSVLDQFMDVFEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREM

Query:  LSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMP
        L+SGVI+PSTSP+SS +LLVKKKD SW F VDYRAVNN+TIP+KFPIPVVEELFDELCGASL SKIDLKSGYH I+M D+DIE TAFRTHEGHYEFLVMP
Subjt:  LSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMP

Query:  FGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSKNVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPK
        FGL NAP TFQAL+N IFKP LRKF+LVFF DILIYSKN  +HV HM  V S LR+HELYAN+KKC+FAQ K+EYLGHVISGEG  VD EKIK+I  WP+
Subjt:  FGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSKNVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPK

Query:  PTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVLI
        PTNI+E+RG LGLTGYYR FV  YG+IAAPLTQ LKKGG+KW EEA +AF KLK AM+SLP+L LP+FNQPFEIET+ASG+GVG VL+
Subjt:  PTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVLI

A0A5D3CA10 Ty3/gypsy retrotransposon protein1.0e-16572.16Show/hide
Query:  MIKSWGEQDEGFFIECRALEVEGLIGTKCCKADVIPEVVSPVLSVLDQFMDVFEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREM
        M+K+W E+D GF IECR+L+V  + G + C  +        + SV+ Q+ DVF+WP+KLPP+R+IEH IH+KEGTDPINVRPYRY +HQ+ EMEKLV+EM
Subjt:  MIKSWGEQDEGFFIECRALEVEGLIGTKCCKADVIPEVVSPVLSVLDQFMDVFEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREM

Query:  LSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMP
        L SGVI+PSTSP+SS VLLVKKKDGSW F VDYRAVNN+TIP+KFPIPVVEELFDELCGA+L SKIDLKSGYH I+MADEDIE TAFRTHEGHYEFLVMP
Subjt:  LSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMP

Query:  FGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSKNVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPK
        FGL NAP TFQALMNAIFKP LRKF+LVFF DIL+YS+N  EHV H+E+V   LR+HELYAN+KKC FAQ K+EYLGHVIS EG  VD EKIK+I +WP+
Subjt:  FGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSKNVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPK

Query:  PTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVLI
        PTN++E RG LGLTGYYR FV  YG+IAAPLTQLLKKGGF W EEA +AF +LK AM+SLPVL LP+FN+ FEIE +ASGYGVG VL+
Subjt:  PTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVLI

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.68.9e-6638.07Show/hide
Query:  SVLDQFMDV-FEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREMLSSGVIQPSTSPFSSLVLLV-KKKDGS----WCFYVDYRAVN
        ++L ++ D+ +   DKL      +H I+ K      +   Y   Y Q  E+E  +++ML+ G+I+ S SP++S + +V KK+D S    +   +DYR +N
Subjt:  SVLDQFMDV-FEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREMLSSGVIQPSTSPFSSLVLLV-KKKDGS----WCFYVDYRAVN

Query:  NSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMPFGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYS
          T+ ++ PIP ++E+  +L   +  + IDL  G+H I+M  E +  TAF T  GHYE+L MPFGL NAP TFQ  MN I +P L K  LV+  DI+++S
Subjt:  NSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMPFGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYS

Query:  KNVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPKPTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKK
         ++DEH+  + LVF  L K  L     KC F + +  +LGHV++ +G + + EKI++I ++P PT  +E++  LGLTGYYR F+  +  IA P+T+ LKK
Subjt:  KNVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPKPTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKK

Query:  GG--FKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVL
               N E + AF KLK  +   P+L +P+F + F + T+AS   +G VL
Subjt:  GG--FKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVL

P20825 Retrovirus-related Pol polyprotein from transposon 2974.7e-6739.03Show/hide
Query:  VLDQFMDV-FEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREMLSSGVIQPSTSPFSSLVLLVKKKD-----GSWCFYVDYRAVNN
        +L++F ++ ++  +KL     I+H ++    + PI  + Y      + E+E  V+EML+ G+I+ S SP++S   +V KK        +   +DYR +N 
Subjt:  VLDQFMDV-FEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREMLSSGVIQPSTSPFSSLVLLVKKKD-----GSWCFYVDYRAVNN

Query:  STIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMPFGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSK
         TIP+++PIP ++E+  +L      + IDL  G+H I+M +E I  TAF T  GHYE+L MPFGL NAP TFQ  MN I +P L K  LV+  DI+I+S 
Subjt:  STIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMPFGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSK

Query:  NVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPKPTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKG
        ++ EH+N ++LVF+ L    L     KC F + +  +LGH+++ +G + +  K+K+IV +P PT  +E+R  LGLTGYYR F+  Y  IA P+T  LKK 
Subjt:  NVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPKPTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKG

Query:  GFKWNEEAE--EAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVL
             ++ E  EAF KLK  ++  P+L LP+F + F + T+AS   +G VL
Subjt:  GFKWNEEAE--EAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVL

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein2.1e-5937.15Show/hide
Query:  IEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREMLSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLIS
        ++H I +K G     ++PY      ++E+ K+V+++L +  I PS SP SS V+LV KKDG++   VDYR +N +TI + FP+P ++ L   +  A + +
Subjt:  IEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREMLSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLIS

Query:  KIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMPFGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSKNVDEHVNHMELVFSTLRKHELYANRK
         +DL SGYH I M  +D   TAF T  G YE+ VMPFGL+NAP+TF   M   F+    +F+ V+  DILI+S++ +EH  H++ V   L+   L   +K
Subjt:  KIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMPFGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSKNVDEHVNHMELVFSTLRKHELYANRK

Query:  KCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPKPTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLT
        KC FA  + E+LG+ I  +       K  +I ++P P  +++ +  LG+  YYR F+     IA P+ QL      +W E+ ++A  KLK A+ + PVL 
Subjt:  KCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPKPTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLT

Query:  LPNFNQPFEIETNASGYGVGVVL
          N    + + T+AS  G+G VL
Subjt:  LPNFNQPFEIETNASGYGVGVVL

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus6.4e-6434.81Show/hide
Query:  SVLDQFMDVFEWP-DKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREMLSSGVIQPSTSPFSSLVLLVKKK-----DGSWCFYVDYRAVN
        S+L +F  +FE P   +  +  ++  I      DPI  + Y Y  + + E+E+ + E+L  G+I+PS SP++S + +V KK     +  +   VD++ +N
Subjt:  SVLDQFMDVFEWP-DKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREMLSSGVIQPSTSPFSSLVLLVKKK-----DGSWCFYVDYRAVN

Query:  NSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMPFGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYS
          TIP+ +PIP +      L  A   + +DL SG+H I M + DI  TAF T  G YEFL +PFGL NAP  FQ +++ I + H+ K   V+  DI+++S
Subjt:  NSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMPFGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYS

Query:  KNVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPKPTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLK-
        ++ D H  ++ LV ++L K  L  N +K  F  ++VE+LG++++ +G + D +K+++I E P PT+++E++  LG+T YYR F+Q Y  +A PLT L + 
Subjt:  KNVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPKPTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLK-

Query:  -----------KGGFKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVL
                   K     +E A ++F  LK  + S  +L  P F +PF + T+AS + +G VL
Subjt:  -----------KGGFKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVL

Q99315 Transposon Ty3-G Gag-Pol polyprotein1.2e-5937.15Show/hide
Query:  IEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREMLSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLIS
        ++H I +K G     ++PY      ++E+ K+V+++L +  I PS SP SS V+LV KKDG++   VDYR +N +TI + FP+P ++ L   +  A + +
Subjt:  IEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREMLSSGVIQPSTSPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLIS

Query:  KIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMPFGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSKNVDEHVNHMELVFSTLRKHELYANRK
         +DL SGYH I M  +D   TAF T  G YE+ VMPFGL+NAP+TF   M   F+    +F+ V+  DILI+S++ +EH  H++ V   L+   L   +K
Subjt:  KIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMPFGLINAPTTFQALMNAIFKPHLRKFLLVFFSDILIYSKNVDEHVNHMELVFSTLRKHELYANRK

Query:  KCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPKPTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLT
        KC FA  + E+LG+ I  +       K  +I ++P P  +++ +  LG+  YYR F+     IA P+ QL      +W E+ ++A  KLK A+ + PVL 
Subjt:  KCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPKPTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLT

Query:  LPNFNQPFEIETNASGYGVGVVL
          N    + + T+AS  G+G VL
Subjt:  LPNFNQPFEIETNASGYGVGVVL

Arabidopsis top hitse value%identityAlignment
ATMG00850.1 DNA/RNA polymerases superfamily protein1.2e-0451.28Show/hide
Query:  QKEEMEKLVREMLSSGVIQPSTSPFSSLVLLVKKKDGSW
        ++  ++  + EML + +IQPS SP+SS VLLV+KKDG W
Subjt:  QKEEMEKLVREMLSSGVIQPSTSPFSSLVLLVKKKDGSW

ATMG00860.1 DNA/RNA polymerases superfamily protein5.8e-3652.67Show/hide
Query:  VNHMELVFSTLRKHELYANRKKCSFAQSKVEYLG--HVISGEGAEVDLEKIKSIVEWPKPTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFK
        +NH+ +V     +H+ YANRKKC+F Q ++ YLG  H+ISGEG   D  K++++V WP+P N  E+RG LGLTGYYR FV+ YG I  PLT+LLKK   K
Subjt:  VNHMELVFSTLRKHELYANRKKCSFAQSKVEYLG--HVISGEGAEVDLEKIKSIVEWPKPTNIREVRGLLGLTGYYRWFVQGYGSIAAPLTQLLKKGGFK

Query:  WNEEAEEAFGKLKQAMMSLPVLTLPNFNQPF
        W E A  AF  LK A+ +LPVL LP+   PF
Subjt:  WNEEAEEAFGKLKQAMMSLPVLTLPNFNQPF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTAAGTCATGGGGAGAGCAAGATGAAGGCTTTTTCATTGAATGTCGAGCATTAGAAGTCGAAGGCTTAATCGGGACTAAATGTTGTAAGGCTGATGTGATTCCTGA
AGTAGTCAGTCCTGTGCTTTCAGTTTTGGATCAGTTCATGGACGTCTTTGAATGGCCAGATAAACTGCCGCCTAAGAGAGACATTGAACATCATATACATCTAAAGGAGG
GGACTGACCCCATAAACGTAAGACCTTACCGATATTGTTATCACCAAAAGGAAGAAATGGAAAAATTGGTAAGGGAGATGCTTTCATCAGGAGTAATTCAGCCCAGTACC
AGCCCCTTTTCCAGCCTTGTACTTCTGGTCAAGAAAAAGGATGGTAGCTGGTGTTTCTATGTAGACTATAGGGCTGTGAATAACTCTACTATTCCGAATAAATTTCCTAT
ACCTGTAGTTGAGGAGTTGTTTGATGAATTATGTGGTGCATCCTTAATTTCGAAGATTGACTTGAAATCCGGGTATCATCATATTCAAATGGCTGATGAGGACATTGAAA
ATACTGCCTTTAGAACTCATGAAGGCCACTATGAGTTCTTAGTTATGCCCTTTGGACTAATAAATGCACCGACCACATTTCAAGCTTTGATGAATGCAATTTTCAAACCT
CACTTGAGGAAGTTCCTCTTAGTATTTTTTAGTGACATACTGATTTACAGTAAGAATGTGGATGAACATGTGAATCATATGGAACTAGTCTTTTCTACCCTGAGGAAGCA
CGAGCTGTATGCAAACAGAAAAAAGTGCAGTTTTGCTCAGTCAAAGGTAGAATATTTGGGTCATGTTATTTCTGGAGAAGGTGCGGAAGTTGATTTGGAAAAGATAAAGT
CTATAGTTGAATGGCCGAAGCCTACCAATATCAGGGAAGTCAGAGGATTGCTTGGGTTAACTGGCTATTATAGATGGTTTGTGCAAGGGTATGGTTCCATAGCAGCACCC
CTAACTCAATTGCTTAAGAAGGGGGGGTTCAAGTGGAATGAAGAGGCTGAAGAAGCCTTTGGAAAGTTGAAACAAGCAATGATGTCTCTTCCCGTTTTAACACTACCAAA
CTTTAACCAACCGTTTGAAATTGAAACAAACGCATCAGGTTATGGTGTTGGTGTTGTATTGATTTAG
mRNA sequenceShow/hide mRNA sequence
ATGATTAAGTCATGGGGAGAGCAAGATGAAGGCTTTTTCATTGAATGTCGAGCATTAGAAGTCGAAGGCTTAATCGGGACTAAATGTTGTAAGGCTGATGTGATTCCTGA
AGTAGTCAGTCCTGTGCTTTCAGTTTTGGATCAGTTCATGGACGTCTTTGAATGGCCAGATAAACTGCCGCCTAAGAGAGACATTGAACATCATATACATCTAAAGGAGG
GGACTGACCCCATAAACGTAAGACCTTACCGATATTGTTATCACCAAAAGGAAGAAATGGAAAAATTGGTAAGGGAGATGCTTTCATCAGGAGTAATTCAGCCCAGTACC
AGCCCCTTTTCCAGCCTTGTACTTCTGGTCAAGAAAAAGGATGGTAGCTGGTGTTTCTATGTAGACTATAGGGCTGTGAATAACTCTACTATTCCGAATAAATTTCCTAT
ACCTGTAGTTGAGGAGTTGTTTGATGAATTATGTGGTGCATCCTTAATTTCGAAGATTGACTTGAAATCCGGGTATCATCATATTCAAATGGCTGATGAGGACATTGAAA
ATACTGCCTTTAGAACTCATGAAGGCCACTATGAGTTCTTAGTTATGCCCTTTGGACTAATAAATGCACCGACCACATTTCAAGCTTTGATGAATGCAATTTTCAAACCT
CACTTGAGGAAGTTCCTCTTAGTATTTTTTAGTGACATACTGATTTACAGTAAGAATGTGGATGAACATGTGAATCATATGGAACTAGTCTTTTCTACCCTGAGGAAGCA
CGAGCTGTATGCAAACAGAAAAAAGTGCAGTTTTGCTCAGTCAAAGGTAGAATATTTGGGTCATGTTATTTCTGGAGAAGGTGCGGAAGTTGATTTGGAAAAGATAAAGT
CTATAGTTGAATGGCCGAAGCCTACCAATATCAGGGAAGTCAGAGGATTGCTTGGGTTAACTGGCTATTATAGATGGTTTGTGCAAGGGTATGGTTCCATAGCAGCACCC
CTAACTCAATTGCTTAAGAAGGGGGGGTTCAAGTGGAATGAAGAGGCTGAAGAAGCCTTTGGAAAGTTGAAACAAGCAATGATGTCTCTTCCCGTTTTAACACTACCAAA
CTTTAACCAACCGTTTGAAATTGAAACAAACGCATCAGGTTATGGTGTTGGTGTTGTATTGATTTAG
Protein sequenceShow/hide protein sequence
MIKSWGEQDEGFFIECRALEVEGLIGTKCCKADVIPEVVSPVLSVLDQFMDVFEWPDKLPPKRDIEHHIHLKEGTDPINVRPYRYCYHQKEEMEKLVREMLSSGVIQPST
SPFSSLVLLVKKKDGSWCFYVDYRAVNNSTIPNKFPIPVVEELFDELCGASLISKIDLKSGYHHIQMADEDIENTAFRTHEGHYEFLVMPFGLINAPTTFQALMNAIFKP
HLRKFLLVFFSDILIYSKNVDEHVNHMELVFSTLRKHELYANRKKCSFAQSKVEYLGHVISGEGAEVDLEKIKSIVEWPKPTNIREVRGLLGLTGYYRWFVQGYGSIAAP
LTQLLKKGGFKWNEEAEEAFGKLKQAMMSLPVLTLPNFNQPFEIETNASGYGVGVVLI