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Cmc06g0177821 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc06g0177821
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPHD finger protein ALFIN-LIKE 1-like
Genome locationCMiso1.1chr06:34421930..34448121
RNA-Seq ExpressionCmc06g0177821
SyntenyCmc06g0177821
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0042393 - histone binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041041.1 PHD finger protein ALFIN-LIKE 1-like [Cucumis melo var. makuwa]2.9e-3197.18Show/hide
Query:  MSRGRTLEFSSLRGVGSAVEDLGAVESWEGRRSHEYLLHLIPNPWTILLPRLLLPINIIHFVSFPFCFGFF
        MSRGRTLEFSSLRGVGSAVEDLGAVESWEGRRSHEYLLHLIPNPWTILLPRLLLPINIIHFVSFPFCFG +
Subjt:  MSRGRTLEFSSLRGVGSAVEDLGAVESWEGRRSHEYLLHLIPNPWTILLPRLLLPINIIHFVSFPFCFGFF
TrEMBL top hitse value%identityAlignment
A0A5A7THA3 PHD finger protein ALFIN-LIKE 1-like1.4e-3197.18Show/hide
Query:  MSRGRTLEFSSLRGVGSAVEDLGAVESWEGRRSHEYLLHLIPNPWTILLPRLLLPINIIHFVSFPFCFGFF
        MSRGRTLEFSSLRGVGSAVEDLGAVESWEGRRSHEYLLHLIPNPWTILLPRLLLPINIIHFVSFPFCFG +
Subjt:  MSRGRTLEFSSLRGVGSAVEDLGAVESWEGRRSHEYLLHLIPNPWTILLPRLLLPINIIHFVSFPFCFGFF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCTCGTGGAAGGACTTTAGAGTTCTCCTCCCTTCGTGGGGTGGGATCTGCGGTTGAGGATCTCGGAGCAGTGGAGTCATGGGAGGGTCGCCGAAGCCATGAGTACCT
TCTTCATCTCATTCCAAATCCTTGGACCATTCTGTTGCCGAGGCTGCTTCTGCCTATTAACATTATCCACTTCGTTTCCTTCCCTTTCTGCTTTGGGTTCTTCTGCTCTC
TATAG
mRNA sequenceShow/hide mRNA sequence
TTTCAAACTTAATCAACGGAATGCAACGATGAAAATTTTAGGTTTATTTACTTTTCTTCTTGGTCTCTCGTCACTTGCACGCAACCTTTTGAACTCTCAAACCATTCAAC
CTTCTTCTTCTTCTTCTTCCGCCTCCGTGCACGGTGGTCGAATCTCTAAACCCTAATCTCTTACCACCTCGATCTCTTCTTTTGGGGACTTTATTCTCTGGTCTTTCATG
TCTCGTGGAAGGACTTTAGAGTTCTCCTCCCTTCGTGGGGTGGGATCTGCGGTTGAGGATCTCGGAGCAGTGGAGTCATGGGAGGGTCGCCGAAGCCATGAGTACCTTCT
TCATCTCATTCCAAATCCTTGGACCATTCTGTTGCCGAGGCTGCTTCTGCCTATTAACATTATCCACTTCGTTTCCTTCCCTTTCTGCTTTGGGTTCTTCTGCTCTCTAT
AGGGTTTCCGAGAATGCTATAATTCGTGAGGCTTTGCACAACCTTCGGGAGCATCTATCGAGCTGCTATTCATGACCTTCTCGAAGGGTGGACTTGGGCTTTCCAAAATG
ACGTCGAAGAGATTTTCAGATTACGCCCGCTTGCCGCTCTTGTTCTCGCCCTCGCTTACGATGCCGGTGAATTCTACGGTCCTTGTGATCCAGGTCATGCGGCTTTCTTA
ATTCTTGTGATCCAGGTGAGGGAAGTTTGTGTCTGTATGGACATCCTAATGAAACATGGGAAGTGGTTCAAGAGCCTGCACTTGGAATTAATTTTGCAAGAGATGGCATG
AACAGAAAAGGATTGGCTATCTCTTGTTGCTGTACATAGTGATTCCTGGTTGCTCTACGTGGCTTTCTATTTTGGAGCAAGGCTTGACTGAAACAAAAGGTGACATATCC
ATTAGATGGTTTGAGGTTACACATGGCAGTTGACCGTTGACCCTGGGTTTCGAACAGCATCCAAGGTTTGTTGACTTGTCCTACCTATATCTGAAAATTGAAAAACAATC
AATTGTGTAGTATGGCTGAAAAATTCTTCATATGTAAATAATGGACAATTTCGGTTTCTAGATTGCCTCAAATAAGCTATGAGAGGAAGGCATTACATCTTAGTACAGTG
GTCTTGGACAATTTCGGTTTCTTATGTTGTATTCAATAAAAATAAATACCATGTTCCTTGGCTATAATAGTGTGTACAAGGGTAAAAAAGTCTTTGATAGAGGATTCTCA
AAGGAGAACTGAAACATTCAAAGCCTTGCTTTCGGCTTCCCTAGCTAGCCACATTGATGTTCTATCCTTTCGACACTGAGGAAAGACAGATGTAAATGAAGGGTTCACCT
TACAAGACAGTGTTTGATGTTTTTGCAGGTAATTTGTATTAGTTGTTATGTCTGCAAATGAATTTATATTATTATAGTTGTTATTGAGTTGTTATAAGTAAGTCTGAAGT
GTGGCAATGATTGTTTAGGAGTGAAATCTGGGGAGGTTTGTAGACTAAAACGCTCTGACATACATGATTTATGTTCTTCGTAATTCTGTGCTAGCTCATTCCCTATGTGA
GTGTGCCTACATTCTTGTCCTCCCAATCTTTTCCCAACTTTTTCATGTTTTTAATTTTGAACTGCACTCTTGGTTTTCGTATAACTGTAACAGATGTTCCTTTACTTTTA
CTGTGAAACCACTTTATCTATTTGCAATATGCTGAATGTTCTATTAGAAATCTACTTACAGGAATATAGATGATGAATTACACAGATTTATTTTGTTACAGTACGATGAT
GAAATTTAGTTGTTTCTATTCCTTTATGTAATTGTGGTTTAATCCTAACAATAAAAAATC
Protein sequenceShow/hide protein sequence
MSRGRTLEFSSLRGVGSAVEDLGAVESWEGRRSHEYLLHLIPNPWTILLPRLLLPINIIHFVSFPFCFGFFCSL