CuGenDBv2

Gene ID	Cmc07g0184761
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Genome location	CMiso1.1chr07:2758833..2759207
RNA-Seq Expression	Cmc07g0184761
Synteny	Cmc07g0184761
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006488 - dolichol-linked oligosaccharide biosynthetic process (biological process) GO:0015074 - DNA integration (biological process) GO:0005634 - nucleus (cellular component) GO:0016020 - membrane (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0005524 - ATP binding (molecular function) GO:0016887 - ATPase activity (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0035107.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

8.6e-60

99.18

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Query:  MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS
        MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS
Subjt:  MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS

Query:  LNSVVGLNNPGTMKVKGKVGEK
        LNSVVGLNNPGTMKVKGKVGE+
Subjt:  LNSVVGLNNPGTMKVKGKVGEK

KAA0038753.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

4.2e-59

100

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Query:  MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS
        MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS
Subjt:  MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS

Query:  LNSVVGLNNPGTMKVKGKVG
        LNSVVGLNNPGTMKVKGKVG
Subjt:  LNSVVGLNNPGTMKVKGKVG

KAA0055700.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

8.6e-60

98.37

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Query:  MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS
        MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS
Subjt:  MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS

Query:  LNSVVGLNNPGTMKVKGKVGEKK
        LNSVVGLNNPGTMKVKGKVGE++
Subjt:  LNSVVGLNNPGTMKVKGKVGEKK

KAA0063375.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

8.6e-60

98.37

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Query:  MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS
        MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS
Subjt:  MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS

Query:  LNSVVGLNNPGTMKVKGKVGEKK
        LNSVVGLNNPGTMKVKGKVGE++
Subjt:  LNSVVGLNNPGTMKVKGKVGEKK

TYK00786.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]

4.2e-59

97.56

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Query:  MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS
        MRTITLREVGTGDNRREGP KRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS
Subjt:  MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS

Query:  LNSVVGLNNPGTMKVKGKVGEKK
        LNSVVGLNNPGTMKVKGKVGE++
Subjt:  LNSVVGLNNPGTMKVKGKVGEKK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SS61 Ty3/gypsy retrotransposon protein

2.1e-59

100

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Query:  MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS
        MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS
Subjt:  MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS

Query:  LNSVVGLNNPGTMKVKGKVG
        LNSVVGLNNPGTMKVKGKVG
Subjt:  LNSVVGLNNPGTMKVKGKVG

A0A5A7T0J9 Ty3/gypsy retrotransposon protein

4.1e-60

99.18

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Query:  MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS
        MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS
Subjt:  MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS

Query:  LNSVVGLNNPGTMKVKGKVGEK
        LNSVVGLNNPGTMKVKGKVGE+
Subjt:  LNSVVGLNNPGTMKVKGKVGEK

A0A5A7UKN8 Ty3/gypsy retrotransposon protein

4.1e-60

98.37

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Query:  MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS
        MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS
Subjt:  MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS

Query:  LNSVVGLNNPGTMKVKGKVGEKK
        LNSVVGLNNPGTMKVKGKVGE++
Subjt:  LNSVVGLNNPGTMKVKGKVGEKK

A0A5A7VBU7 Ty3/gypsy retrotransposon protein

4.1e-60

98.37

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Query:  MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS
        MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS
Subjt:  MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS

Query:  LNSVVGLNNPGTMKVKGKVGEKK
        LNSVVGLNNPGTMKVKGKVGE++
Subjt:  LNSVVGLNNPGTMKVKGKVGEKK

A0A5D3DMY9 Ty3/gypsy retrotransposon protein

2.1e-59

100

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Query:  MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS
        MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS
Subjt:  MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELS

Query:  LNSVVGLNNPGTMKVKGKVG
        LNSVVGLNNPGTMKVKGKVG
Subjt:  LNSVVGLNNPGTMKVKGKVG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

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ATGAGGACGATAACACTGAGGGAGGTGGGTACGGGCGACAACCGTCGGGAAGGGCCCACGAAACGGTTATCTGATGCCGAGTTCCAAGCTCGAAGGGAAAAAGGGTTATG
TTTTCGCTGTGGGGAGAAGTATTTCGCCGGACATCGGTGCAAGTCGAAGGAGCATAAGGAGCTTCGAATGCTGGTAGTCAAGGAAGGAGGGGAGGAACTGGAGATTGTGG
AGGAAGAGTTTTTTGATGCCGAAACTGAGATGAAACCAGCTGAAGTACCAAACGTGGAAAATTTAAACATAGAACTATCGCTCAACTCCGTGGTGGGGCTGAACAATCCG
GGAACCATGAAAGTAAAAGGGAAGGTGGGGGAGAAGAAGTGGTGA

mRNA sequence

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Protein sequence

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MRTITLREVGTGDNRREGPTKRLSDAEFQARREKGLCFRCGEKYFAGHRCKSKEHKELRMLVVKEGGEELEIVEEEFFDAETEMKPAEVPNVENLNIELSLNSVVGLNNP
GTMKVKGKVGEKKW

Cmc07g0184761 (gene) of Melon (Charmono) v1.1 genome