CuGenDBv2

Gene ID	Cmc07g0185251
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Genome location	CMiso1.1chr07:3324354..3324704
RNA-Seq Expression	Cmc07g0185251
Synteny	Cmc07g0185251
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ADJ18449.1 gag/pol protein, partial [Bryonia dioica]

1.7e-54

92.24

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Query:  MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
        MLVYG+KDLILTGYTDSDFQ+DKDARKSTSGSV TLNGGAVVWRS+KQ+CIADSTMEAEYVAACEA KE VWL+KFLTDLEVVPNMHLPITLYCDNSGAV
Subjt:  MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAV

Query:  ANSREPRSHKRGKHIE
        ANS+EPRSHKRGKHIE
Subjt:  ANSREPRSHKRGKHIE

KAA0041899.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]

1.7e-54

93.1

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Query:  MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
        MLVYGSKDLILTGYTDSDFQTDKDARKSTSGS+ TLNGGAV+WRSIKQSCIA+STMEAEYVA CEA KE VWLKKF TDLEVVPNMHLPITLYCDNSGAV
Subjt:  MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAV

Query:  ANSREPRSHKRGKHIE
        ANSREPRSHKRGKHIE
Subjt:  ANSREPRSHKRGKHIE

KAA0059674.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]

1.0e-54

93.1

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Query:  MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
        MLVYGSKDLILTGYTDSDFQTDKD+RKSTSGSV TLNGGAVVWR+IKQSCIADSTMEAE++ ACEA KE VWLKKFLTDLEVVPNMHLPITLYCDNSGAV
Subjt:  MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAV

Query:  ANSREPRSHKRGKHIE
        ANSREPRSHKRGKHIE
Subjt:  ANSREPRSHKRGKHIE

KAA0066714.1 gag/pol protein [Cucumis melo var. makuwa]

1.3e-57

99.14

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Query:  MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
        MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEA KEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
Subjt:  MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAV

Query:  ANSREPRSHKRGKHIE
        ANSREPRSHKRGKHIE
Subjt:  ANSREPRSHKRGKHIE

TYK06386.1 gag/pol protein [Cucumis melo var. makuwa]

1.7e-54

94.83

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Query:  MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
        MLVYGSKDLIL GYTDSDFQTDKDARKSTSGSV TLNGGAVVWRSIKQSCIADSTME EYVAACEA KE VWLKKFLTDLE VPNMHLPITLYCDNSGAV
Subjt:  MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAV

Query:  ANSREPRSHKRGKHIE
        ANSREPRSHKRGKHIE
Subjt:  ANSREPRSHKRGKHIE

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TKJ0 Retrovirus-related pol polyprotein from transposon tnt 1-94

8.4e-55

93.1

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Query:  MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
        MLVYGSKDLILTGYTDSDFQTDKDARKSTSGS+ TLNGGAV+WRSIKQSCIA+STMEAEYVA CEA KE VWLKKF TDLEVVPNMHLPITLYCDNSGAV
Subjt:  MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAV

Query:  ANSREPRSHKRGKHIE
        ANSREPRSHKRGKHIE
Subjt:  ANSREPRSHKRGKHIE

A0A5A7UX57 Retrovirus-related pol polyprotein from transposon tnt 1-94

4.9e-55

93.1

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Query:  MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
        MLVYGSKDLILTGYTDSDFQTDKD+RKSTSGSV TLNGGAVVWR+IKQSCIADSTMEAE++ ACEA KE VWLKKFLTDLEVVPNMHLPITLYCDNSGAV
Subjt:  MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAV

Query:  ANSREPRSHKRGKHIE
        ANSREPRSHKRGKHIE
Subjt:  ANSREPRSHKRGKHIE

A0A5A7VHA0 Gag/pol protein

6.2e-58

99.14

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Query:  MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
        MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEA KEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
Subjt:  MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAV

Query:  ANSREPRSHKRGKHIE
        ANSREPRSHKRGKHIE
Subjt:  ANSREPRSHKRGKHIE

A0A5D3C7T2 Gag/pol protein

8.4e-55

94.83

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Query:  MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
        MLVYGSKDLIL GYTDSDFQTDKDARKSTSGSV TLNGGAVVWRSIKQSCIADSTME EYVAACEA KE VWLKKFLTDLE VPNMHLPITLYCDNSGAV
Subjt:  MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAV

Query:  ANSREPRSHKRGKHIE
        ANSREPRSHKRGKHIE
Subjt:  ANSREPRSHKRGKHIE

E2GK51 Gag/pol protein (Fragment)

8.4e-55

92.24

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Query:  MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
        MLVYG+KDLILTGYTDSDFQ+DKDARKSTSGSV TLNGGAVVWRS+KQ+CIADSTMEAEYVAACEA KE VWL+KFLTDLEVVPNMHLPITLYCDNSGAV
Subjt:  MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAV

Query:  ANSREPRSHKRGKHIE
        ANS+EPRSHKRGKHIE
Subjt:  ANSREPRSHKRGKHIE

SwissProt top hits

e value

%identity

Alignment

P04146 Copia protein

1.5e-13

37.38

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Query:  LTGYTDSDFQTDKDARKSTSGSV-STLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSH
        + GY DSD+   +  RKST+G +    +   + W + +Q+ +A S+ EAEY+A  EA +E +WLK  LT + +   +  PI +Y DN G ++ +  P  H
Subjt:  LTGYTDSDFQTDKDARKSTSGSV-STLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSH

Query:  KRGKHIE
        KR KHI+
Subjt:  KRGKHIE

P0CV72 Secreted RxLR effector protein 161

9.3e-11

53.97

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Query:  LTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWL
        L GY+D+D+  D ++R+STSG +  LNGG V WRS KQ  +A S+ E EY+A  EAT+E VWL
Subjt:  LTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWL

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94

3.4e-21

45.22

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Query:  LVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAVA
        L +G  D IL GYTD+D   D D RKS++G + T +GGA+ W+S  Q C+A ST EAEY+AA E  KE++WLK+FL +L +    ++   +YCD+  A+ 
Subjt:  LVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAVA

Query:  NSREPRSHKRGKHIE
         S+    H R KHI+
Subjt:  NSREPRSHKRGKHIE

Arabidopsis top hits

e value

%identity

Alignment

AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8

1.1e-14

37.07

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Query:  LVYGSK-DLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAV
        L Y S+ ++ L  ++D+ FQ+ KD R+ST+G    L    + W+S KQ  ++ S+ EAEY A   AT E++WL +F  +L++   +  P  L+CDN+ A+
Subjt:  LVYGSK-DLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAV

Query:  ANSREPRSHKRGKHIE
          +     H+R KHIE
Subjt:  ANSREPRSHKRGKHIE

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCTTGTGTATGGTTCTAAGGATCTGATCCTTACTGGATACACTGACTCCGATTTTCAAACTGATAAAGATGCTAGAAAGTCTACATCAGGATCAGTTTCCACTTTGAA
CGGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCTTGTATTGCCGACTCCACTATGGAAGCTGAATATGTAGCTGCCTGTGAAGCAACAAAGGAAGTAGTATGGCTTA
AAAAGTTCTTAACCGATTTGGAAGTTGTTCCAAATATGCATTTGCCAATCACCTTGTATTGTGACAACAGTGGTGCAGTTGCAAATTCGCGAGAACCTAGAAGTCACAAA
CGTGGAAAGCACATTGAATGA

mRNA sequence

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Protein sequence

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MLVYGSKDLILTGYTDSDFQTDKDARKSTSGSVSTLNGGAVVWRSIKQSCIADSTMEAEYVAACEATKEVVWLKKFLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHK
RGKHIE

Cmc07g0185251 (gene) of Melon (Charmono) v1.1 genome