; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc07g0185511 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc07g0185511
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRibonuclease H
Genome locationCMiso1.1chr07:3560853..3562007
RNA-Seq ExpressionCmc07g0185511
SyntenyCmc07g0185511
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006310 - DNA recombination (biological process)
GO:0015074 - DNA integration (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0005634 - nucleus (cellular component)
GO:0030430 - host cell cytoplasm (cellular component)
GO:0003723 - RNA binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR041577 - Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0066746.1 uncharacterized protein E6C27_scaffold271G00850 [Cucumis melo var. makuwa]5.6e-21195.83Show/hide
Query:  MLVNNTAGYSIFSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLF
        MLVNNTAGYS FSFMDGFSGYNQIKMAEEDREK TFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLF
Subjt:  MLVNNTAGYSIFSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLF

Query:  DRLRKYQLKFNLSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAF
        DRLRKYQLKFN SKCTFGATSGKLLGFIVSEEGIKVDP+KV AIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCE IFKLL KNNP KWNEDCEEAF
Subjt:  DRLRKYQLKFNLSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAF

Query:  NKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIK
        NKIKQYLQSPPVLIPPA GRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKF DYESRYS LERTCCALVWTAHRLRQYMLYH TCLISKMDPIK
Subjt:  NKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIK

Query:  YIFEKSSLSGRIAKWQVLLSEYDIVYVTKKAIKGSTVADHLAAQPVANYEPMMIDFPDENIFLVEKNARDHETRTMLFDGQVMF
        YIFEKSSLSGRIAKWQVLLSEYDIVYVTKKAIKGS VADHLAAQP ANYEPM IDF DENIFLVEKNARDHETRTMLFDGQVMF
Subjt:  YIFEKSSLSGRIAKWQVLLSEYDIVYVTKKAIKGSTVADHLAAQPVANYEPMMIDFPDENIFLVEKNARDHETRTMLFDGQVMF

TYK24459.1 uncharacterized protein E5676_scaffold717G00160 [Cucumis melo var. makuwa]5.1e-20493.42Show/hide
Query:  MLVNNTAGYSIFSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLF
        MLV+NTAGYS FSFMDGFSGYNQIKMAEEDREKTTFITLWGTF YKVMPFGLKN GATYQRAMVTLFHDMMHKEIEVYVDDMIAKSK DEDHT TLQKLF
Subjt:  MLVNNTAGYSIFSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLF

Query:  DRLRKYQLKFNLSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAF
        DRLRKYQLK N SKCTFGAT GKLLGFIVSEEGIKVDP+KV AIMEM SPK EKEIRGFLGRLNYISRFIS+LTPTCEPIFKLLRKNNP KWNEDCEEAF
Subjt:  DRLRKYQLKFNLSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAF

Query:  NKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIK
        NKIKQYLQSPPVLIPPAPGRPLILYLTVLESSM GVLGQHDLSGKKEHAIYYLSKKF DYESRYSMLERTCCALVWTAHRLRQYMLYH TCLISKMD IK
Subjt:  NKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIK

Query:  YIFEKSSLSGRIAKWQVLLSEYDIVYVTKKAIKGSTVADHLAAQPVANYEPMMIDFPDENIFLVEKNARDHETRTMLFDG
        YIFEK SLSGRIAKWQVLLSEYDIVYVTKKAIKGS VADHLAAQPVA+YEPM IDFPD+NIFLVEKNARDHET TMLFDG
Subjt:  YIFEKSSLSGRIAKWQVLLSEYDIVYVTKKAIKGSTVADHLAAQPVANYEPMMIDFPDENIFLVEKNARDHETRTMLFDG

XP_031737561.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402452 [Cucumis sativus]2.2e-19990.79Show/hide
Query:  MLVNNTAGYSIFSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLF
        MLV+NTAGYS FSFMDGFSGYNQIKMAEEDREKTTFITLWGTF YKVMPFGLKN GATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKA+EDHT  LQKLF
Subjt:  MLVNNTAGYSIFSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLF

Query:  DRLRKYQLKFNLSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAF
        DRLRKYQLK N SKCTFGATSGKLLGFIVSEEGIKVDP+KV AIM+M SP+ EKE+R FLGRLNYISRFISHLTPTCEPIFKLLRKNNP KWNEDCEEAF
Subjt:  DRLRKYQLKFNLSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAF

Query:  NKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIK
        NKIKQYLQSPPVLIPPAPGRPLILYLTVLE SM GVLGQHDLSGKKEHAIYYLSKKF DYES+YSMLERTCCALVWTAHRLRQYMLYH T LISKMDPIK
Subjt:  NKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIK

Query:  YIFEKSSLSGRIAKWQVLLSEYDIVYVTKKAIKGSTVADHLAAQPVANYEPMMIDFPDENIFLVEKNARDHETRTMLFDG
        YIFEK SLSGRIAKWQVLLSEYDIVYVTKKAIKGS +ADHLAAQPVA+YEPM +DFPDENIFLVE +A DHET  MLFDG
Subjt:  YIFEKSSLSGRIAKWQVLLSEYDIVYVTKKAIKGSTVADHLAAQPVANYEPMMIDFPDENIFLVEKNARDHETRTMLFDG

XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]2.2e-19990.79Show/hide
Query:  MLVNNTAGYSIFSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLF
        MLV+NTAGYS FSFMDGFSGYNQIKMAEEDREKTTFITLWGTF YKVMPFGLKN GATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKA+EDHT  LQKLF
Subjt:  MLVNNTAGYSIFSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLF

Query:  DRLRKYQLKFNLSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAF
        DRLRKYQLK N SKCTFGATSGKLLGFIVSEEGIKVDP+KV AIM+M SP+ EKE+R FLGRLNYISRFISHLTPTCEPIFKLLRKNNP KWNEDCEEAF
Subjt:  DRLRKYQLKFNLSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAF

Query:  NKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIK
        NKIKQYLQSPPVLIPPAPGRPLILYLTVLE SM GVLGQHDLSGKKEHAIYYLSKKF DYES+YSMLERTCCALVWTAHRLRQYMLYH T LISKMDPIK
Subjt:  NKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIK

Query:  YIFEKSSLSGRIAKWQVLLSEYDIVYVTKKAIKGSTVADHLAAQPVANYEPMMIDFPDENIFLVEKNARDHETRTMLFDG
        YIFEK SLSGRIAKWQVLLSEYDIVYVTKKAIKGS +ADHLAAQPVA+YEPM +DFPDENIFLVE +A DHET  MLFDG
Subjt:  YIFEKSSLSGRIAKWQVLLSEYDIVYVTKKAIKGSTVADHLAAQPVANYEPMMIDFPDENIFLVEKNARDHETRTMLFDG

XP_031741698.1 uncharacterized protein LOC116403895 [Cucumis sativus]2.2e-19990.79Show/hide
Query:  MLVNNTAGYSIFSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLF
        MLV+NTAGYS FSFMDGFSGYNQIKMAEEDREKTTFITLWGTF YKVMPFGLKN GATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKA+EDHT  LQKLF
Subjt:  MLVNNTAGYSIFSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLF

Query:  DRLRKYQLKFNLSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAF
        DRLRKYQLK N SKCTFGATSGKLLGFIVSEEGIKVDP+KV AIM+M SP+ EKE+R FLGRLNYISRFISHLTPTCEPIFKLLRKNNP KWNEDCEEAF
Subjt:  DRLRKYQLKFNLSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAF

Query:  NKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIK
        NKIKQYLQSPPVLIPPAPGRPLILYLTVLE SM GVLGQHDLSGKKEHAIYYLSKKF DYES+YSMLERTCCALVWTAHRLRQYMLYH T LISKMDPIK
Subjt:  NKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIK

Query:  YIFEKSSLSGRIAKWQVLLSEYDIVYVTKKAIKGSTVADHLAAQPVANYEPMMIDFPDENIFLVEKNARDHETRTMLFDG
        YIFEK SLSGRIAKWQVLLSEYDIVYVTKKAIKGS +ADHLAAQPVA+YEPM +DFPDENIFLVE +A DHET  MLFDG
Subjt:  YIFEKSSLSGRIAKWQVLLSEYDIVYVTKKAIKGSTVADHLAAQPVANYEPMMIDFPDENIFLVEKNARDHETRTMLFDG

TrEMBL top hitse value%identityAlignment
A0A5A7T7R4 Ribonuclease H3.6e-19591.35Show/hide
Query:  IFSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLFDRLRKYQLKF
        + SFMDGFSGYNQIKMA+EDREKTTFITLWGTF YKVMPFGLKN GATYQR MVTLFHDMMHKEIEVYVDDMIAKSK DEDHT TLQKLFDRLRKYQLK 
Subjt:  IFSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLFDRLRKYQLKF

Query:  NLSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAFNKIKQYLQSP
        N SKC FGATSGKLLGFIVSEEGIKVDP+KV AIMEM SPK EKEIRGFLGRLNYISRFISHLTPTCEPIFKLL KNNP KWNEDCEEAFNKIKQYLQSP
Subjt:  NLSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAFNKIKQYLQSP

Query:  PVLIPPAPGRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIKYIFEKSSLSG
        PVL+PPAPGRPLILYLTVLESSM GVLGQHDLSGKK+H IYYLSKKF +YESRYSMLERTCC LVWTAHRLRQYMLYH TCLISKMDPIKYIFEK SLSG
Subjt:  PVLIPPAPGRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIKYIFEKSSLSG

Query:  RIAKWQVLLSEYDIVYVTKKAIKGSTVADHLAAQPVANYEPMMIDFPDENIFLVEKNARDHETRTMLFDG
        RIAKWQVLLSEYDIVYVTKKAIK S VADHLAAQPVA+YEPM IDFPD+NIFLVEKNARDHET TMLFDG
Subjt:  RIAKWQVLLSEYDIVYVTKKAIKGSTVADHLAAQPVANYEPMMIDFPDENIFLVEKNARDHETRTMLFDG

A0A5A7TRL7 Ribonuclease H1.1e-18085.26Show/hide
Query:  MLVNNTAGYSIFSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLF
        MLV+NTA YS FSFMDGFSGYNQIKMA+EDREKTTFITLWGTF YK                              VYVDDMIAKSK DEDHT TLQKLF
Subjt:  MLVNNTAGYSIFSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLF

Query:  DRLRKYQLKFNLSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAF
        DRLRKYQLK N SKCTFGATS KLLGFIVSEEGIKVDP+KV AIMEM SPK EKEIRGFLGRLNYISRFISHLTPTC+PIFKLLRKNNP KWNEDCEEAF
Subjt:  DRLRKYQLKFNLSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAF

Query:  NKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIK
        NKIKQYLQSPPVLIPPAPGRPLILYLTVLESSM GVLGQHDLSGKKEHAIYYLSKKF +YESRYSMLERTCCALVWTAHRLRQYMLYH TCLISKMDPIK
Subjt:  NKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIK

Query:  YIFEKSSLSGRIAKWQVLLSEYDIVYVTKKAIKGSTVADHLAAQPVANYEPMMIDFPDENIFLVEKNARDHETRTMLFDG
        YIFEK SLSGRIAKWQVLLSEYDIVYVTKKAIKGS VADHLAAQPVA+YEPM IDFPD+NIFLVEKNARDHET TMLFDG
Subjt:  YIFEKSSLSGRIAKWQVLLSEYDIVYVTKKAIKGSTVADHLAAQPVANYEPMMIDFPDENIFLVEKNARDHETRTMLFDG

A0A5A7VK41 Reverse transcriptase domain-containing protein2.7e-21195.83Show/hide
Query:  MLVNNTAGYSIFSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLF
        MLVNNTAGYS FSFMDGFSGYNQIKMAEEDREK TFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLF
Subjt:  MLVNNTAGYSIFSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLF

Query:  DRLRKYQLKFNLSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAF
        DRLRKYQLKFN SKCTFGATSGKLLGFIVSEEGIKVDP+KV AIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCE IFKLL KNNP KWNEDCEEAF
Subjt:  DRLRKYQLKFNLSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAF

Query:  NKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIK
        NKIKQYLQSPPVLIPPA GRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKF DYESRYS LERTCCALVWTAHRLRQYMLYH TCLISKMDPIK
Subjt:  NKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIK

Query:  YIFEKSSLSGRIAKWQVLLSEYDIVYVTKKAIKGSTVADHLAAQPVANYEPMMIDFPDENIFLVEKNARDHETRTMLFDGQVMF
        YIFEKSSLSGRIAKWQVLLSEYDIVYVTKKAIKGS VADHLAAQP ANYEPM IDF DENIFLVEKNARDHETRTMLFDGQVMF
Subjt:  YIFEKSSLSGRIAKWQVLLSEYDIVYVTKKAIKGSTVADHLAAQPVANYEPMMIDFPDENIFLVEKNARDHETRTMLFDGQVMF

A0A5D3DMD2 Ribonuclease H2.5e-20493.42Show/hide
Query:  MLVNNTAGYSIFSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLF
        MLV+NTAGYS FSFMDGFSGYNQIKMAEEDREKTTFITLWGTF YKVMPFGLKN GATYQRAMVTLFHDMMHKEIEVYVDDMIAKSK DEDHT TLQKLF
Subjt:  MLVNNTAGYSIFSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLF

Query:  DRLRKYQLKFNLSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAF
        DRLRKYQLK N SKCTFGAT GKLLGFIVSEEGIKVDP+KV AIMEM SPK EKEIRGFLGRLNYISRFIS+LTPTCEPIFKLLRKNNP KWNEDCEEAF
Subjt:  DRLRKYQLKFNLSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAF

Query:  NKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIK
        NKIKQYLQSPPVLIPPAPGRPLILYLTVLESSM GVLGQHDLSGKKEHAIYYLSKKF DYESRYSMLERTCCALVWTAHRLRQYMLYH TCLISKMD IK
Subjt:  NKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIK

Query:  YIFEKSSLSGRIAKWQVLLSEYDIVYVTKKAIKGSTVADHLAAQPVANYEPMMIDFPDENIFLVEKNARDHETRTMLFDG
        YIFEK SLSGRIAKWQVLLSEYDIVYVTKKAIKGS VADHLAAQPVA+YEPM IDFPD+NIFLVEKNARDHET TMLFDG
Subjt:  YIFEKSSLSGRIAKWQVLLSEYDIVYVTKKAIKGSTVADHLAAQPVANYEPMMIDFPDENIFLVEKNARDHETRTMLFDG

A0A5D3DUB3 Retrovirus-related Pol polyprotein from transposon 17.61.2e-17993.18Show/hide
Query:  TFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLFDRLRKYQLKFNLSKCTFGATSGKLLGFIVSEEGI
        TFITLWGTF YKVMPFGLKN GATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHT TLQKLFDRLRKYQLK N SKCTFGATSGKLLGFIVSEE I
Subjt:  TFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLFDRLRKYQLKFNLSKCTFGATSGKLLGFIVSEEGI

Query:  KVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMD
        KVDPNKV AIMEM SPK EKEIRGFLGRLNYISRFISHLTPTC+PIFKLLRKNNPEKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSM 
Subjt:  KVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAFNKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMD

Query:  GVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIKYIFEKSSLSGRIAKWQVLLSEYDIVYVTKKAIKG
        GVLGQHDLS KKEHAIYYLSKKF DYESRYS+LERTCCALVWTAHRLRQYMLYH TCLISKMDPIKYIFEK SLSGRIAKWQVLLSEYDIVYVTKKA+KG
Subjt:  GVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIKYIFEKSSLSGRIAKWQVLLSEYDIVYVTKKAIKG

Query:  STVADHLAAQPVANYEPMMIDFPDENIFLVEKNARDH
        STVADHLAAQPVA+YEPM IDFP+ENIFLVEKN   H
Subjt:  STVADHLAAQPVANYEPMMIDFPDENIFLVEKNARDH

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.1e-4432.34Show/hide
Query:  FSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLFDRLRKYQLKFN
        F+ +D   G++QI+M  E   KT F T  G + Y  MPFGLKN  AT+QR M  +   +++K   VY+DD+I  S + ++H  +L  +F++L K  LK  
Subjt:  FSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLFDRLRKYQLKFN

Query:  LSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKN-NPEKWNEDCEEAFNKIKQYLQSP
        L KC F       LG +++ +GIK +P K+ AI +   P   KEI+ FLG   Y  +FI +     +P+ K L+KN   +  N + + AF K+K  +   
Subjt:  LSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKN-NPEKWNEDCEEAFNKIKQYLQSP

Query:  PVLIPPAPGRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIKYIFEKSSLSG
        P+L  P   +   L     + ++  VL Q        H + Y+S+   ++E  YS +E+   A+VW     R Y+L     + S   P+ +++     + 
Subjt:  PVLIPPAPGRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIKYIFEKSSLSG

Query:  RIAKWQVLLSEYDIVYVTKKAIKG--STVADHLA
        ++ +W+V LSE+D      K IKG  + VAD L+
Subjt:  RIAKWQVLLSEYDIVYVTKKAIKG--STVADHLA

P0CT34 Transposon Tf2-1 polyprotein4.3e-3627.32Show/hide
Query:  LVNNTAGYSIFSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLFD
        L+    G +IF+ +D  S Y+ I++ + D  K  F    G F Y VMP+G+    A +Q  + T+  +     +  Y+DD++  SK++ +H   ++ +  
Subjt:  LVNNTAGYSIFSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLFD

Query:  RLRKYQLKFNLSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAFN
        +L+   L  N +KC F  +  K +G+ +SE+G       +  +++   PK  KE+R FLG +NY+ +FI   +    P+  LL+K+   KW     +A  
Subjt:  RLRKYQLKFNLSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAFN

Query:  KIKQYLQSPPVLIPPAPGRPLILYLTVLESSMDGVLGQ-HDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIK
         IKQ L SPPVL      + ++L     + ++  VL Q HD    K + + Y S K    +  YS+ ++   A++ +    R Y       L S ++P K
Subjt:  KIKQYLQSPPVLIPPAPGRPLILYLTVLESSMDGVLGQ-HDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIK

Query:  YIFEKSSLSGRI-----------AKWQVLLSEYDIVYVTKKAIKGSTVADHLAAQPVANYEPMMIDFPDENIFLVEK
         + +  +L GRI           A+WQ+ L +++   +  +    + +AD L ++ V   EP+  D  D +I  V +
Subjt:  YIFEKSSLSGRI-----------AKWQVLLSEYDIVYVTKKAIKGSTVADHLAAQPVANYEPMMIDFPDENIFLVEK

P0CT41 Transposon Tf2-12 polyprotein4.3e-3627.32Show/hide
Query:  LVNNTAGYSIFSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLFD
        L+    G +IF+ +D  S Y+ I++ + D  K  F    G F Y VMP+G+    A +Q  + T+  +     +  Y+DD++  SK++ +H   ++ +  
Subjt:  LVNNTAGYSIFSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLFD

Query:  RLRKYQLKFNLSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAFN
        +L+   L  N +KC F  +  K +G+ +SE+G       +  +++   PK  KE+R FLG +NY+ +FI   +    P+  LL+K+   KW     +A  
Subjt:  RLRKYQLKFNLSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAFN

Query:  KIKQYLQSPPVLIPPAPGRPLILYLTVLESSMDGVLGQ-HDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIK
         IKQ L SPPVL      + ++L     + ++  VL Q HD    K + + Y S K    +  YS+ ++   A++ +    R Y       L S ++P K
Subjt:  KIKQYLQSPPVLIPPAPGRPLILYLTVLESSMDGVLGQ-HDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIK

Query:  YIFEKSSLSGRI-----------AKWQVLLSEYDIVYVTKKAIKGSTVADHLAAQPVANYEPMMIDFPDENIFLVEK
         + +  +L GRI           A+WQ+ L +++   +  +    + +AD L ++ V   EP+  D  D +I  V +
Subjt:  YIFEKSSLSGRI-----------AKWQVLLSEYDIVYVTKKAIKGSTVADHLAAQPVANYEPMMIDFPDENIFLVEK

P20825 Retrovirus-related Pol polyprotein from transposon 2972.8e-4332.53Show/hide
Query:  FSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLFDRLRKYQLKFN
        F+ +D   G++QI+M EE   KT F T  G + Y  MPFGL+N  AT+QR M  +   +++K   VY+DD+I  S +  +H  ++Q +F +L    LK  
Subjt:  FSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLFDRLRKYQLKFN

Query:  LSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNP-EKWNEDCEEAFNKIKQYLQSP
        L KC F       LG IV+ +GIK +P KV AI+    P  +KEIR FLG   Y  +FI +     +P+   L+K    +    +  EAF K+K  +   
Subjt:  LSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNP-EKWNEDCEEAFNKIKQYLQSP

Query:  PVLIPPAPGRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIKYIFEKSSLSG
        P+L  P   +  +L       ++  VL Q+       H I ++S+   D+E  YS +E+   A+VW     R Y+L     + S   P++++        
Subjt:  PVLIPPAPGRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIKYIFEKSSLSG

Query:  RIAKWQVLLSEYDIVYVTKKAIKGSTVADHLA
        ++ +W+V LSEY       K  K ++VAD L+
Subjt:  RIAKWQVLLSEYDIVYVTKKAIKGSTVADHLA

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.9e-3930.64Show/hide
Query:  FSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLFDRLRKYQLKFN
        F+ +D  SG++QI M E D  KT F TL G + +  +PFGLKN  A +QR +  +  + + K   VY+DD+I  S+  + H   L+ +   L K  L+ N
Subjt:  FSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLFDRLRKYQLKFN

Query:  LSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLR-----------KNNPEKWNEDCEEAF
        L K  F  T  + LG+IV+ +GIK DP KV AI EM  P   KE++ FLG  +Y  +FI       +P+  L R              P   +E   ++F
Subjt:  LSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLR-----------KNNPEKWNEDCEEAF

Query:  NKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLI-SKMDPI
        N +K  L S  +L  P   +P  L       ++  VL Q D    ++  I Y+S+     E  Y+ +E+   A++W+   LR Y+    T  + +   P+
Subjt:  NKIKQYLQSPPVLIPPAPGRPLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLI-SKMDPI

Query:  KYIFEKSSLSGRIAKWQVLLSEYDIVYVTKKAIKGSTVADHLAAQP
         +     + + ++ +W+  + EY+   + K   K + VAD L+  P
Subjt:  KYIFEKSSLSGRIAKWQVLLSEYDIVYVTKKAIKGSTVADHLAAQP

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein6.8e-1335.54Show/hide
Query:  KYQLKFNLSKCTFGATSGKLLG--FIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAFNK
        ++Q   N  KC FG      LG   I+S EG+  DP K+ A++    PK   E+RGFLG   Y  RF+ +      P+ +LL+KN+  KW E    AF  
Subjt:  KYQLKFNLSKCTFGATSGKLLG--FIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAFNK

Query:  IKQYLQSPPVLIPPAPGRPLI
        +K  + + PVL  P    P +
Subjt:  IKQYLQSPPVLIPPAPGRPLI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTGGTGAATAACACTGCAGGATACTCAATTTTCTCCTTCATGGATGGTTTTTCAGGATATAATCAGATCAAAATGGCTGAAGAAGATAGAGAAAAAACGACATTCAT
TACCCTTTGGGGAACATTCTACTATAAAGTAATGCCTTTTGGTTTGAAAAATGTTGGTGCAACATATCAGCGAGCAATGGTTACACTTTTTCATGATATGATGCATAAAG
AAATAGAGGTGTATGTTGATGATATGATCGCAAAATCCAAAGCAGATGAAGATCATACAATCACACTTCAAAAATTATTTGATCGGTTGAGAAAGTATCAATTGAAATTT
AATCTATCCAAATGTACATTTGGGGCAACCTCGGGAAAGCTACTGGGATTCATCGTCAGTGAAGAAGGGATCAAAGTAGACCCAAATAAAGTAAGTGCTATCATGGAAAT
GTCATCCCCTAAAGTAGAAAAAGAAATTCGAGGTTTTCTGGGAAGATTGAACTACATATCTAGATTTATCTCACATTTAACACCAACATGCGAACCAATCTTCAAGCTCT
TACGTAAAAACAACCCAGAAAAATGGAATGAGGATTGTGAAGAAGCTTTCAACAAAATTAAGCAGTATTTGCAGAGCCCACCAGTACTGATACCTCCAGCTCCAGGGCGA
CCATTAATCTTGTATTTAACAGTATTAGAAAGTTCCATGGATGGTGTTTTAGGACAACATGATTTATCAGGGAAGAAGGAGCATGCCATTTATTATTTGAGCAAAAAGTT
TATCGATTATGAATCTAGATACTCAATGTTAGAGCGAACTTGTTGTGCTTTGGTATGGACTGCTCATCGTTTGAGGCAATATATGTTATACCACATGACATGTCTTATTT
CAAAAATGGATCCAATAAAATACATTTTTGAGAAATCGTCATTATCTGGAAGGATTGCAAAATGGCAAGTTTTGTTGTCAGAGTACGATATTGTTTATGTTACTAAAAAA
GCAATAAAGGGAAGCACAGTTGCTGATCATTTAGCTGCTCAACCAGTAGCAAATTACGAACCTATGATGATTGATTTCCCAGATGAAAACATATTTCTAGTTGAAAAGAA
TGCTAGAGATCATGAGACAAGGACTATGCTTTTCGATGGCCAAGTTATGTTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTTGGTGAATAACACTGCAGGATACTCAATTTTCTCCTTCATGGATGGTTTTTCAGGATATAATCAGATCAAAATGGCTGAAGAAGATAGAGAAAAAACGACATTCAT
TACCCTTTGGGGAACATTCTACTATAAAGTAATGCCTTTTGGTTTGAAAAATGTTGGTGCAACATATCAGCGAGCAATGGTTACACTTTTTCATGATATGATGCATAAAG
AAATAGAGGTGTATGTTGATGATATGATCGCAAAATCCAAAGCAGATGAAGATCATACAATCACACTTCAAAAATTATTTGATCGGTTGAGAAAGTATCAATTGAAATTT
AATCTATCCAAATGTACATTTGGGGCAACCTCGGGAAAGCTACTGGGATTCATCGTCAGTGAAGAAGGGATCAAAGTAGACCCAAATAAAGTAAGTGCTATCATGGAAAT
GTCATCCCCTAAAGTAGAAAAAGAAATTCGAGGTTTTCTGGGAAGATTGAACTACATATCTAGATTTATCTCACATTTAACACCAACATGCGAACCAATCTTCAAGCTCT
TACGTAAAAACAACCCAGAAAAATGGAATGAGGATTGTGAAGAAGCTTTCAACAAAATTAAGCAGTATTTGCAGAGCCCACCAGTACTGATACCTCCAGCTCCAGGGCGA
CCATTAATCTTGTATTTAACAGTATTAGAAAGTTCCATGGATGGTGTTTTAGGACAACATGATTTATCAGGGAAGAAGGAGCATGCCATTTATTATTTGAGCAAAAAGTT
TATCGATTATGAATCTAGATACTCAATGTTAGAGCGAACTTGTTGTGCTTTGGTATGGACTGCTCATCGTTTGAGGCAATATATGTTATACCACATGACATGTCTTATTT
CAAAAATGGATCCAATAAAATACATTTTTGAGAAATCGTCATTATCTGGAAGGATTGCAAAATGGCAAGTTTTGTTGTCAGAGTACGATATTGTTTATGTTACTAAAAAA
GCAATAAAGGGAAGCACAGTTGCTGATCATTTAGCTGCTCAACCAGTAGCAAATTACGAACCTATGATGATTGATTTCCCAGATGAAAACATATTTCTAGTTGAAAAGAA
TGCTAGAGATCATGAGACAAGGACTATGCTTTTCGATGGCCAAGTTATGTTTTGA
Protein sequenceShow/hide protein sequence
MLVNNTAGYSIFSFMDGFSGYNQIKMAEEDREKTTFITLWGTFYYKVMPFGLKNVGATYQRAMVTLFHDMMHKEIEVYVDDMIAKSKADEDHTITLQKLFDRLRKYQLKF
NLSKCTFGATSGKLLGFIVSEEGIKVDPNKVSAIMEMSSPKVEKEIRGFLGRLNYISRFISHLTPTCEPIFKLLRKNNPEKWNEDCEEAFNKIKQYLQSPPVLIPPAPGR
PLILYLTVLESSMDGVLGQHDLSGKKEHAIYYLSKKFIDYESRYSMLERTCCALVWTAHRLRQYMLYHMTCLISKMDPIKYIFEKSSLSGRIAKWQVLLSEYDIVYVTKK
AIKGSTVADHLAAQPVANYEPMMIDFPDENIFLVEKNARDHETRTMLFDGQVMF