| GenBank top hits | e value | %identity | Alignment |
|---|
| KAA0056761.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 4.8e-87 | 97.52 | Show/hide |
Query: SPVRTPFDASKHLKKNKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGYCDANWVT
SPVRTPFDASKHLKKNKGDSVSQPEYAKII SVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHF KFP VLEGYCDANWVT
Subjt: SPVRTPFDASKHLKKNKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGYCDANWVT
Query: DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDVPL
DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEA+WIKNLLGDVPL
Subjt: DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDVPL
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| TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 4.8e-87 | 97.52 | Show/hide |
Query: SPVRTPFDASKHLKKNKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGYCDANWVT
SPVRTPFDASKHLKKNKGDSVSQPEYAKII SVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHF KFP VLEGYCDANWVT
Subjt: SPVRTPFDASKHLKKNKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGYCDANWVT
Query: DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDVPL
DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEA+WIKNLLGDVPL
Subjt: DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDVPL
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| TYK06518.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 4.8e-87 | 97.52 | Show/hide |
Query: SPVRTPFDASKHLKKNKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGYCDANWVT
SPVRTPFDASKHLKKNKGDSVSQPEYAKII SVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHF KFP VLEGYCDANWVT
Subjt: SPVRTPFDASKHLKKNKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGYCDANWVT
Query: DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDVPL
DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEA+WIKNLLGDVPL
Subjt: DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDVPL
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| TYK07244.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 4.8e-87 | 97.52 | Show/hide |
Query: SPVRTPFDASKHLKKNKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGYCDANWVT
SPVRTPFDASKHLKKNKGDSVSQPEYAKII SVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHF KFP VLEGYCDANWVT
Subjt: SPVRTPFDASKHLKKNKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGYCDANWVT
Query: DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDVPL
DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEA+WIKNLLGDVPL
Subjt: DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDVPL
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| TYK07981.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 9.8e-88 | 98.14 | Show/hide |
Query: SPVRTPFDASKHLKKNKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGYCDANWVT
SPVRTPFDASKHLKKNKGDSVSQPEYAKII SVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFP VLEGYCDANWVT
Subjt: SPVRTPFDASKHLKKNKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGYCDANWVT
Query: DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDVPL
DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEA+WIKNLLGDVPL
Subjt: DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDVPL
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7SP23 Ty1-copia retrotransposon protein | 2.3e-87 | 97.52 | Show/hide |
Query: SPVRTPFDASKHLKKNKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGYCDANWVT
SPVRTPFDASKHLKKNKGDSVSQPEYAKII SVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHF KFP VLEGYCDANWVT
Subjt: SPVRTPFDASKHLKKNKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGYCDANWVT
Query: DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDVPL
DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEA+WIKNLLGDVPL
Subjt: DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDVPL
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| A0A5A7SRD3 Ty1-copia retrotransposon protein | 2.3e-87 | 97.52 | Show/hide |
Query: SPVRTPFDASKHLKKNKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGYCDANWVT
SPVRTPFDASKHLKKNKGDSVSQPEYAKII SVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHF KFP VLEGYCDANWVT
Subjt: SPVRTPFDASKHLKKNKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGYCDANWVT
Query: DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDVPL
DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEA+WIKNLLGDVPL
Subjt: DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDVPL
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| A0A5D3C1A6 Ty1-copia retrotransposon protein | 2.3e-87 | 97.52 | Show/hide |
Query: SPVRTPFDASKHLKKNKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGYCDANWVT
SPVRTPFDASKHLKKNKGDSVSQPEYAKII SVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHF KFP VLEGYCDANWVT
Subjt: SPVRTPFDASKHLKKNKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGYCDANWVT
Query: DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDVPL
DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEA+WIKNLLGDVPL
Subjt: DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDVPL
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| A0A5D3C5T2 Ty1-copia retrotransposon protein | 2.3e-87 | 97.52 | Show/hide |
Query: SPVRTPFDASKHLKKNKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGYCDANWVT
SPVRTPFDASKHLKKNKGDSVSQPEYAKII SVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHF KFP VLEGYCDANWVT
Subjt: SPVRTPFDASKHLKKNKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGYCDANWVT
Query: DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDVPL
DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEA+WIKNLLGDVPL
Subjt: DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDVPL
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| A0A5D3C7Z8 Ty1-copia retrotransposon protein | 4.7e-88 | 98.14 | Show/hide |
Query: SPVRTPFDASKHLKKNKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGYCDANWVT
SPVRTPFDASKHLKKNKGDSVSQPEYAKII SVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFP VLEGYCDANWVT
Subjt: SPVRTPFDASKHLKKNKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGYCDANWVT
Query: DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDVPL
DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEA+WIKNLLGDVPL
Subjt: DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDVPL
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 1.4e-20 | 36.65 | Show/hide |
Query: VRTPFDASKHLKKNKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNK---FPVVLEGYCDANWV
V TP + + + D +I +MY+M TRPD+ AV+ LSRY+ N W L+ +LRYLKGTID L F K F + GY D++W
Subjt: VRTPFDASKHLKKNKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNK---FPVVLEGYCDANWV
Query: TDNDEVNSTSGYVF-LLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDV
+ ST+GY+F + I W + +Q +A S+ E+E++AL A +EA W+K LL +
Subjt: TDNDEVNSTSGYVF-LLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDV
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| P0CV72 Secreted RxLR effector protein 161 | 1.1e-25 | 46.09 | Show/hide |
Query: YAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVV-LEGYCDANWVTDNDEVNSTSGYVFLLGGGAISWKS
Y + ++MYLM TRPD+A AV LS++ +P HW AL+ +LRYL+ T Y L F + L GY DA+W D + STSGY+F L GG +SW+S
Subjt: YAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVV-LEGYCDANWVTDNDEVNSTSGYVFLLGGGAISWKS
Query: TKQTCIARSTMESEFIALELAGQEAKWI
KQ +A S+ E E++AL A QEA W+
Subjt: TKQTCIARSTMESEFIALELAGQEAKWI
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 6.7e-31 | 42.26 | Show/hide |
Query: PVRTPFDASKHLKK--------NKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGY
PV TP L K KG+ P Y+ + S+MY M TRPDIA+AV +SR+ NP + HW+A++ +LRYL+GT CL F +L+GY
Subjt: PVRTPFDASKHLKK--------NKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVVLEGY
Query: CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDVPL
DA+ D D S++GY+F GGAISW+S Q C+A ST E+E+IA G+E W+K L ++ L
Subjt: CDANWVTDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDVPL
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 3.8e-26 | 40.62 | Show/hide |
Query: PVRTPFDASKHLKKNKGDSVSQP-EYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVV-LEGYCDANWV
PV TP S L G ++ P EY I+ S+ YL +TRPDI+YAV+RLS++ H P H AL+ +LRYL GT ++ + K + L Y DA+W
Subjt: PVRTPFDASKHLKKNKGDSVSQP-EYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVV-LEGYCDANWV
Query: TDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDV
D D+ ST+GY+ LG ISW S KQ + RS+ E+E+ ++ E +WI +LL ++
Subjt: TDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDV
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 3.1e-28 | 41.88 | Show/hide |
Query: PVRTPFDASKHLKKNKGDSVSQP-EYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVV-LEGYCDANWV
PV TP S L + G + P EY I+ S+ YL +TRPD++YAV+RLS+Y H P HW+AL+ +LRYL GT D+ + K + L Y DA+W
Subjt: PVRTPFDASKHLKKNKGDSVSQP-EYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNKFPVV-LEGYCDANWV
Query: TDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDV
D D+ ST+GY+ LG ISW S KQ + RS+ E+E+ ++ E +WI +LL ++
Subjt: TDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDV
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8 | 1.4e-20 | 33.95 | Show/hide |
Query: PVRTPFDASKHLKKNK-GDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHF-NKFPVVLEGYCDANWV
P P D S + GD V Y ++I +MYL TR DI++AV++LS+++ P H A+ +L Y+KGT+ L + ++ + L+ + DA++
Subjt: PVRTPFDASKHLKKNK-GDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHF-NKFPVVLEGYCDANWV
Query: TDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDVPL
+ D ST+GY LG ISWKS KQ +++S+ E+E+ AL A E W+ ++ L
Subjt: TDNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKWIKNLLGDVPL
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| ATMG00240.1 Gag-Pol-related retrotransposon family protein | 1.0e-05 | 31.33 | Show/hide |
Query: MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFN-KFPVVLEGYCDANWVTDNDEVNSTSGYVFLL
MYL TRPD+ +AV+RLS+++ A+ +L Y+KGT+ L ++ + L+ + D++W + D S +G+ L+
Subjt: MYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFN-KFPVVLEGYCDANWVTDNDEVNSTSGYVFLL
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| ATMG00810.1 DNA/RNA polymerases superfamily protein | 6.0e-19 | 31.79 | Show/hide |
Query: PVRTPFDASKHLKKNKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNK-FPVVLEGYCDANWVT
P+ TP + + ++ I+ ++ YL TRPDI+YAV+ + + H P +D L+ +LRY+KGTI + L+ +K + ++ +CD++W
Subjt: PVRTPFDASKHLKKNKGDSVSQPEYAKIICSVMYLMNYTRPDIAYAVSRLSRYTHNPNRYHWDALRHLLRYLKGTIDYCLHFNK-FPVVLEGYCDANWVT
Query: DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKW
ST+G+ LG ISW + +Q ++RS+ E+E+ AL L E W
Subjt: DNDEVNSTSGYVFLLGGGAISWKSTKQTCIARSTMESEFIALELAGQEAKW
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