CuGenDBv2

Gene ID	Cmc07g0186461
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	DNA-directed RNA polymerase subunit beta'
Genome location	CMiso1.1chr07:4393648..4394813
RNA-Seq Expression	Cmc07g0186461
Synteny	Cmc07g0186461
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR006592 - RNA polymerase, N-terminal IPR007080 - RNA polymerase Rpb1, domain 1 IPR042102 - RNA polymerase Rpb1, domain 3 superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AAZ94642.1 RNA polymerase beta I subunit [Cucumis sativus]

6.7e-98

55.53

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Query:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK
        MVLCLL VLPPELRPIIQIDGGKLMSSDIN LYRRVIYRNNT IDLLTTSRSTPGELVMCQEKLVQE VDTLLDNGIR QPMRDGHNKV KSFSDVIEGK
Subjt:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK

Query:  EGRF--------------------------------------------------------------------CYWAIY----------------------
        EGRF                                                                      W I                       
Subjt:  EGRF--------------------------------------------------------------------CYWAIY----------------------

Query:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH
                                                                          VPTQD+LIGLYVLTSGN RGICANRYNPSNRKNH
Subjt:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH

Query:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI
        KNEKI NNNYKYTKEPFFCN YDAIG YRQKRINLDSPL LRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI+KSIKKEILCIYI
Subjt:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI

CAJ00749.1 RNA polymerase beta chain [Cucumis sativus]

6.7e-98

55.53

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Query:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK
        MVLCLL VLPPELRPIIQIDGGKLMSSDIN LYRRVIYRNNT IDLLTTSRSTPGELVMCQEKLVQE VDTLLDNGIR QPMRDGHNKV KSFSDVIEGK
Subjt:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK

Query:  EGRF--------------------------------------------------------------------CYWAIY----------------------
        EGRF                                                                      W I                       
Subjt:  EGRF--------------------------------------------------------------------CYWAIY----------------------

Query:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH
                                                                          VPTQD+LIGLYVLTSGN RGICANRYNPSNRKNH
Subjt:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH

Query:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI
        KNEKI NNNYKYTKEPFFCN YDAIG YRQKRINLDSPL LRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI+KSIKKEILCIYI
Subjt:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI

YP_009525177.1 RNA polymerase beta subunit [Hodgsonia macrocarpa]

2.3e-98

55.53

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Query:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK
        MVLCLL VLPPELRPIIQIDGGKLMSSDIN LYRRVIYRNNT IDLLTTSRSTPGELVMCQEKLVQE VDTLLDNGIR QPMRDGHNKV KSFSDVIEGK
Subjt:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK

Query:  EGRF--------------------------------------------------------------------CYWAIY----------------------
        EGRF                                                                      W I                       
Subjt:  EGRF--------------------------------------------------------------------CYWAIY----------------------

Query:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH
                                                                          VPTQD+LIGLYVLTSGN RGICANRYNP NRKNH
Subjt:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH

Query:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI
        KNEKIDNNNYKYTKEPFFCN YDAIG YRQKRINLDSPL LRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI+KSIKKEILCIYI
Subjt:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI

YP_009752657.1 RNA polymerase beta' subunit [Ampelosycios humblotii]

2.3e-98

55.53

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Query:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK
        MVLCLL VLPPELRPIIQIDGGKLMSSDIN LYRRVIYRNNT IDLLTTSRSTPGELVMCQEKLVQE VDTLLDNGIR QPMRDGHNKV KSFSDVIEGK
Subjt:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK

Query:  EGRF--------------------------------------------------------------------CYWAIY----------------------
        EGRF                                                                      W I                       
Subjt:  EGRF--------------------------------------------------------------------CYWAIY----------------------

Query:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH
                                                                          VPTQD+LIGLYVLTSGN RGICANRYNP NRKNH
Subjt:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH

Query:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI
        KNEKIDNNNYKYTKEPFFCN YDAIG YRQKRINLDSPL LRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI+KSIKKEILCIYI
Subjt:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI

YP_247590.2 RNA polymerase beta' subunit [Cucumis sativus]

6.7e-98

55.53

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Query:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK
        MVLCLL VLPPELRPIIQIDGGKLMSSDIN LYRRVIYRNNT IDLLTTSRSTPGELVMCQEKLVQE VDTLLDNGIR QPMRDGHNKV KSFSDVIEGK
Subjt:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK

Query:  EGRF--------------------------------------------------------------------CYWAIY----------------------
        EGRF                                                                      W I                       
Subjt:  EGRF--------------------------------------------------------------------CYWAIY----------------------

Query:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH
                                                                          VPTQD+LIGLYVLTSGN RGICANRYNPSNRKNH
Subjt:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH

Query:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI
        KNEKI NNNYKYTKEPFFCN YDAIG YRQKRINLDSPL LRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI+KSIKKEILCIYI
Subjt:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI

TrEMBL top hits

e value

%identity

Alignment

A0A1X9Q1T5 DNA-directed RNA polymerase subunit beta'

3.2e-98

55.53

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Query:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK
        MVLCLL VLPPELRPIIQIDGGKLMSSDIN LYRRVIYRNNT IDLLTTSRSTPGELVMCQEKLVQE VDTLLDNGIR QPMRDGHNKV KSFSDVIEGK
Subjt:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK

Query:  EGRF--------------------------------------------------------------------CYWAIY----------------------
        EGRF                                                                      W I                       
Subjt:  EGRF--------------------------------------------------------------------CYWAIY----------------------

Query:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH
                                                                          VPTQD+LIGLYVLTSGN RGICANRYNPSNRKNH
Subjt:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH

Query:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI
        KNEKI NNNYKYTKEPFFCN YDAIG YRQKRINLDSPL LRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI+KSIKKEILCIYI
Subjt:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI

A0A218KG20 DNA-directed RNA polymerase subunit beta'

3.2e-98

55.53

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Query:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK
        MVLCLL VLPPELRPIIQIDGGKLMSSDIN LYRRVIYRNNT IDLLTTSRSTPGELVMCQEKLVQE VDTLLDNGIR QPMRDGHNKV KSFSDVIEGK
Subjt:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK

Query:  EGRF--------------------------------------------------------------------CYWAIY----------------------
        EGRF                                                                      W I                       
Subjt:  EGRF--------------------------------------------------------------------CYWAIY----------------------

Query:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH
                                                                          VPTQD+LIGLYVLTSGN RGICANRYNPSNRKNH
Subjt:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH

Query:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI
        KNEKI NNNYKYTKEPFFCN YDAIG YRQKRINLDSPL LRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI+KSIKKEILCIYI
Subjt:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI

A0A286SB83 DNA-directed RNA polymerase subunit beta'

3.2e-98

55.53

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Query:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK
        MVLCLL VLPPELRPIIQIDGGKLMSSDIN LYRRVIYRNNT IDLLTTSRSTPGELVMCQEKLVQE VDTLLDNGIR QPMRDGHNKV KSFSDVIEGK
Subjt:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK

Query:  EGRF--------------------------------------------------------------------CYWAIY----------------------
        EGRF                                                                      W I                       
Subjt:  EGRF--------------------------------------------------------------------CYWAIY----------------------

Query:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH
                                                                          VPTQD+LIGLYVLTSGN RGICANRYNPSNRKNH
Subjt:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH

Query:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI
        KNEKI NNNYKYTKEPFFCN YDAIG YRQKRINLDSPL LRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI+KSIKKEILCIYI
Subjt:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI

A0A346QN84 DNA-directed RNA polymerase subunit beta'

1.1e-98

55.53

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Query:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK
        MVLCLL VLPPELRPIIQIDGGKLMSSDIN LYRRVIYRNNT IDLLTTSRSTPGELVMCQEKLVQE VDTLLDNGIR QPMRDGHNKV KSFSDVIEGK
Subjt:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK

Query:  EGRF--------------------------------------------------------------------CYWAIY----------------------
        EGRF                                                                      W I                       
Subjt:  EGRF--------------------------------------------------------------------CYWAIY----------------------

Query:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH
                                                                          VPTQD+LIGLYVLTSGN RGICANRYNP NRKNH
Subjt:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH

Query:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI
        KNEKIDNNNYKYTKEPFFCN YDAIG YRQKRINLDSPL LRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI+KSIKKEILCIYI
Subjt:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI

A0A6H0ES08 DNA-directed RNA polymerase subunit beta'

1.1e-98

55.53

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Query:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK
        MVLCLL VLPPELRPIIQIDGGKLMSSDIN LYRRVIYRNNT IDLLTTSRSTPGELVMCQEKLVQE VDTLLDNGIR QPMRDGHNKV KSFSDVIEGK
Subjt:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK

Query:  EGRF--------------------------------------------------------------------CYWAIY----------------------
        EGRF                                                                      W I                       
Subjt:  EGRF--------------------------------------------------------------------CYWAIY----------------------

Query:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH
                                                                          VPTQD+LIGLYVLTSGN RGICANRYNP NRKNH
Subjt:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH

Query:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI
        KNEKIDNNNYKYTKEPFFCN YDAIG YRQKRINLDSPL LRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI+KSIKKEILCIYI
Subjt:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI

SwissProt top hits

e value

%identity

Alignment

B1A926 DNA-directed RNA polymerase subunit beta'

2.5e-95

52.44

Show/hide

Query:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK
        MVLCLL VLPPELRPIIQIDGGKLMSSDIN LYRRVIYRNNT  DLLTTSRSTPGELVMCQEKLVQE VDTLLDNGIR QPMRDGHNKV KSFSDVIEGK
Subjt:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK

Query:  EGRF--------------------------------------------------------------------CYWAIY----------------------
        EGRF                                                                      W I                       
Subjt:  EGRF--------------------------------------------------------------------CYWAIY----------------------

Query:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH
                                                                          VPTQD+L+GLYVLTSG  RGICANRYNP NRKN+
Subjt:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH

Query:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI
        +NE+ID+NNYKYTKEPFFCN YDAIG YRQKRINLDSPL LRW+LDQRVIASREAPIEVHYESLGT+HEIYG+YLI++S+KKEILCIYI
Subjt:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI

Q09MI7 DNA-directed RNA polymerase subunit beta'

4.8e-91

50.9

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Query:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK
        MVLCLL VLPPELRPIIQIDGGKLMSSDIN LYRRVIYRNNT IDLLTTSRSTPGELVMCQEKLVQE VDTLLDNGIR QPMRDGHNK+ KSFSDVIEGK
Subjt:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK

Query:  EGRF--------------------------------------------------------------------CYWAIY----------------------
        EGRF                                                                      W I                       
Subjt:  EGRF--------------------------------------------------------------------CYWAIY----------------------

Query:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH
                                                                          +PTQD+LIGLYVLTSGN RGICANRYN  NR+N+
Subjt:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH

Query:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI
         +E+ID+N+Y YTKEP FCN YDAIG YRQKRINLDSPL LRWRLDQR+IASREAPIEVHYESLGT HEIYG+YLI++S+KKEIL IYI
Subjt:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI

Q2L8Z4 DNA-directed RNA polymerase subunit beta'

1.7e-91

51.16

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Query:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK
        MVLCLL VLPPELRPIIQIDGGKLMSSDIN LYRRVIYRNNT  DLLTTSRSTPGELVMCQEKLVQE VDTLLDNGIR QPMRDGHNKV KSFSDVIEGK
Subjt:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK

Query:  EGRF--------------------------------------------------------------------CYWAIY----------------------
        EGRF                                                                      W I                       
Subjt:  EGRF--------------------------------------------------------------------CYWAIY----------------------

Query:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH
                                                                          VPTQD+LIGLYVLTSGN RGICANRYNP NRK++
Subjt:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH

Query:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI
        +NE+ID+NNYK T+EPFFCN YDAIG YRQKRINLDSPL LRW+L+Q VIASREAPIEVHYES GT+HEIYG+YLI++S+KK+ILCIYI
Subjt:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI

Q49L07 DNA-directed RNA polymerase subunit beta'

4.8e-91

50.64

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Query:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK
        MVLCLL VLPPELRPIIQIDGGKLMSSDIN LYRRVIYRNNT  DLLTTSRSTPGELVMCQEKLVQE VDTLLDNGIR QPMRDGHNKV KSFSDVIEGK
Subjt:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK

Query:  EGRF--------------------------------------------------------------------CYWAIY----------------------
        EGRF                                                                      W I                       
Subjt:  EGRF--------------------------------------------------------------------CYWAIY----------------------

Query:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH
                                                                          VPTQD+LIGLYVLTSGN RGIC NRYNP NR+N+
Subjt:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH

Query:  KNEKIDNNNYKY--TKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI
        +NE+  +NNYKY   KEPFFCN YDAIG YRQKRINLDSPL LRWRLDQR+IASRE PIE+HYESLGT+HEIYG+YLI++S+KKEI+CIYI
Subjt:  KNEKIDNNNYKY--TKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI

Q4VZP2 DNA-directed RNA polymerase subunit beta'

8.8e-101

55.53

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Query:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK
        MVLCLL VLPPELRPIIQIDGGKLMSSDIN LYRRVIYRNNT IDLLTTSRSTPGELVMCQEKLVQE VDTLLDNGIR QPMRDGHNKV KSFSDVIEGK
Subjt:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK

Query:  EGRF--------------------------------------------------------------------CYWAIY----------------------
        EGRF                                                                      W I                       
Subjt:  EGRF--------------------------------------------------------------------CYWAIY----------------------

Query:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH
                                                                          VPTQD+LIGLYVLTSGN RGICANRYNPSNRKNH
Subjt:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH

Query:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI
        KNEKI NNNYKYTKEPFFCN YDAIG YRQKRINLDSPL LRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI+KSIKKEILCIYI
Subjt:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI

Arabidopsis top hits

e value

%identity

Alignment

ATCG00180.1 DNA-directed RNA polymerase family protein

1.1e-90

50.13

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Query:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK
        MVLCLL VLPPELRPIIQI+GGKLMSSDIN LYRRVIYRNNT  DLLTTSRSTPGELVMCQEKLVQE VDTLLDNGIR QPMRDGHNKV KSFSDVIEGK
Subjt:  MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGK

Query:  EGRF--------------------------------------------------------------------CYWAIY----------------------
        EGRF                                                                      W I                       
Subjt:  EGRF--------------------------------------------------------------------CYWAIY----------------------

Query:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH
                                                                          VPTQD+LIGLYVLTSG  RGICANRYNP NRKN+
Subjt:  ------------------------------------------------------------------VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNH

Query:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI
        +NE+I   NYKYTKEPFFCN YDAIG YRQK+INLDSPL LRW+LDQRVIASRE PIEVHYES G +HEIY +YLI++S+KKE  CIYI
Subjt:  KNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLIIKSIKKEILCIYI

Sequences

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CDS sequence

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ATGGTTTTATGTCTATTACTTGTTCTTCCTCCCGAGTTGAGACCGATCATTCAGATAGATGGGGGTAAACTAATGAGCTCGGATATTAATTCACTCTATAGAAGAGTTAT
ATATCGGAACAATACTTTTATTGATCTATTAACAACAAGTAGATCTACGCCAGGAGAATTAGTAATGTGTCAGGAGAAATTGGTACAAGAAGTCGTGGATACACTTCTTG
ATAATGGAATCCGCGCACAACCAATGAGGGATGGCCATAATAAGGTTAACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTTGTTATTGGGCCATTTAT
GTACCAACTCAAGATTTGCTTATTGGACTTTATGTATTAACGAGCGGGAATGGCCGAGGTATTTGTGCAAATCGGTATAATCCATCTAATCGCAAAAATCATAAAAATGA
AAAAATTGACAATAATAACTATAAATATACAAAAGAACCCTTTTTTTGTAATTTCTATGATGCAATTGGAGTTTATCGCCAGAAAAGGATCAATTTAGATAGTCCTTTGG
GGCTCCGATGGCGACTAGATCAACGCGTTATTGCTTCAAGAGAAGCCCCTATTGAAGTTCACTATGAATCTTTGGGTACCCATCATGAGATTTATGGGTACTATCTAATA
ATAAAAAGTATAAAAAAAGAAATTCTTTGTATATACATTTGA

mRNA sequence

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Protein sequence

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MVLCLLLVLPPELRPIIQIDGGKLMSSDINSLYRRVIYRNNTFIDLLTTSRSTPGELVMCQEKLVQEVVDTLLDNGIRAQPMRDGHNKVNKSFSDVIEGKEGRFCYWAIY
VPTQDLLIGLYVLTSGNGRGICANRYNPSNRKNHKNEKIDNNNYKYTKEPFFCNFYDAIGVYRQKRINLDSPLGLRWRLDQRVIASREAPIEVHYESLGTHHEIYGYYLI
IKSIKKEILCIYI

Cmc07g0186461 (gene) of Melon (Charmono) v1.1 genome