CuGenDBv2

Gene ID	Cmc07g0186471
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	DNA-directed RNA polymerase subunit beta''
Genome location	CMiso1.1chr07:4395171..4395389
RNA-Seq Expression	Cmc07g0186471
Synteny	Cmc07g0186471
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0000428 - DNA-directed RNA polymerase complex (cellular component) GO:0009507 - chloroplast (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR042102 - RNA polymerase Rpb1, domain 3 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

APW82621.1 RNA polymerase beta'' subunit [Citrullus lanatus subsp. vulgaris]

1.8e-30

98.61

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Query:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        MAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
Subjt:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

AUF34037.1 RpoC2 [Mastixia caudatilimba]

1.8e-30

98.61

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Query:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        MAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
Subjt:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

QJF46373.1 RNA polymerase beta'' subunit [Cucumis melo]

1.8e-30

98.61

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Query:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        MAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
Subjt:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

QJR52946.1 RNA polymerase beta'' subunit [Herpetospermum pedunculosum]

1.8e-30

98.61

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Query:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        MAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
Subjt:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

YP_004841773.1 RNA polymerase beta'' subunit [Cucumis melo subsp. melo]

1.8e-30

98.61

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Query:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        MAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
Subjt:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

TrEMBL top hits

e value

%identity

Alignment

A0A1P8LFL6 DNA-directed RNA polymerase

8.9e-31

98.61

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Query:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        MAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
Subjt:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

A0A1X9Q1J9 DNA-directed RNA polymerase subunit beta''

8.9e-31

98.61

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Query:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        MAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
Subjt:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

A0A218KG46 DNA-directed RNA polymerase subunit beta''

8.9e-31

98.61

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Query:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        MAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
Subjt:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

A0A249RXP5 DNA-directed RNA polymerase subunit beta''

8.9e-31

98.61

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Query:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        MAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
Subjt:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

A0A249RZW9 DNA-directed RNA polymerase subunit beta''

8.9e-31

98.61

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Query:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        MAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
Subjt:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

SwissProt top hits

e value

%identity

Alignment

A4QJA5 DNA-directed RNA polymerase subunit beta''

5.4e-33

97.22

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Query:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        MAYTSHILDQ+KTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
Subjt:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

A4QJI9 DNA-directed RNA polymerase subunit beta''

5.4e-33

97.22

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Query:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        MAYTSHILDQ+KTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
Subjt:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

P11704 DNA-directed RNA polymerase subunit beta''

2.4e-33

98.61

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Query:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        MAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
Subjt:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

Q09FX1 DNA-directed RNA polymerase subunit beta''

4.1e-33

97.22

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Query:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        MAYTSHILDQ+KTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
Subjt:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

Q4VZP3 DNA-directed RNA polymerase subunit beta''

2.4e-33

98.61

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Query:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        MAYTSHILDQLKTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
Subjt:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

Arabidopsis top hits

e value

%identity

Alignment

ATCG00170.1 DNA-directed RNA polymerase family protein

1.9e-33

95.83

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Query:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI
        MAYTSHILDQ+KTLGFQQATATSISLGI DLLTIPSKGWLVQDAEQQS ILEKHHHYGNVHAVEKLRQSIEI
Subjt:  MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

Sequences

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CDS sequence

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ATGGCATATACATCACACATCCTAGATCAACTAAAGACTCTGGGGTTCCAGCAGGCCACTGCTACATCCATTTCATTAGGAATTTATGATCTTTTAACAATCCCTTCTAA
GGGATGGCTAGTCCAAGATGCTGAACAACAAAGTTTGATTTTGGAAAAACACCATCATTATGGAAACGTACACGCAGTAGAAAAATTACGCCAGTCCATTGAGATATGA

mRNA sequence

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Protein sequence

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MAYTSHILDQLKTLGFQQATATSISLGIYDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEI

Cmc07g0186471 (gene) of Melon (Charmono) v1.1 genome