CuGenDBv2

Gene ID	Cmc07g0186481
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	DNA-directed RNA polymerase subunit beta''
Genome location	CMiso1.1chr07:4395420..4398146
RNA-Seq Expression	Cmc07g0186481
Synteny	Cmc07g0186481
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR007081 - RNA polymerase Rpb1, domain 5 IPR007083 - RNA polymerase Rpb1, domain 4 IPR038120 - RNA polymerase Rpb1, funnel domain superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

ASY96752.1 RNA polymerase beta'' subunit [Cucumis melo var. momordica]

8.9e-283

62.73

Show/hide

Query:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL
        MNPNFRMTDPFN VHIMSFS ARGNASQV QLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY ISCY ARK VVDTAVRTSDAGYLTRRLVEVVQHI+
Subjt:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL

Query:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------
        VRRTDCG+IRGI VS GNRMIP+RIFIQ LIGRVL  DIYM PRCIGVRNQDI                                               
Subjt:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS
                                                                        GGSCGCSVVPFS YKDQDQIN HS CVERRYIS+LS
Subjt:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS

Query:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF
        VNNDKV QKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISI IPINGLFRRNSILAFF
Subjt:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF

Query:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK
        DDPQ+RRNSS ITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESS IMV NNSIIGV TRLTLSIRSRVG LVRVE  KK
Subjt:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK

Query:  RIELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVNYI
        RIELKIFSGDIHF GEMDKISRHNGILIPPER                                                   DLLQERDNL+LRVVNYI
Subjt:  RIELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVNYI

Query:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR--------------------------SV
        LYGNGKPIRGI GTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKR+                            
Subjt:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR--------------------------SV

Query:  RVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLG-GPSNCEFLFIYDLITHNPISLTKYLQLDNL
        RVPQS SQNQGTIRTLFNRNKE QSLIILSA N LQMDLFNDVKDY VIKESSKKDPL+SIRNSLGPLG  P    F   YDLITHNPISLTKYLQLDNL
Subjt:  RVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLG-GPSNCEFLFIYDLITHNPISLTKYLQLDNL

Query:  KQTFQVL
        KQTFQVL
Subjt:  KQTFQVL

Q4VZP3.1 RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName: Full=PEP; AltName: Full=Plastid-encoded RNA polymerase subunit beta''; Short=RNA polymerase subunit beta'' [Cucumis sativus]

5.0e-278

61.74

Show/hide

Query:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL
        MNPNFRMTDPFN VHIMSFS ARGNASQV QLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY ISCY ARK VVDTAVRTSDAGYLTRRLVEVVQHI+
Subjt:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL

Query:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------
        VRRTDCG+IRGI VS GNRMIP+RIFIQ LIGRVL  DIYM PRCIGVRNQDI                                               
Subjt:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS
                                                                        GGSCGCS+VPFS YKDQDQIN HS CVERRYIS+LS
Subjt:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS

Query:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF
        VNNDKV QKFYGPDLSGKNE+GIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISI IPING+FRRNSILAFF
Subjt:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF

Query:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK
        DDPQ+RRNSS ITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESS IMV NNSIIGV TRLTLSIRSRVG LVRVE  KK
Subjt:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK

Query:  RIELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVNYI
        RIELKIFSGDIHF GEMDKISRHNGILIPPER                                                   DLLQERDNL+LRV NYI
Subjt:  RIELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVNYI

Query:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR--------------------------SV
        LYGNGKPIRGI GTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAY+RKR+                            
Subjt:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR--------------------------SV

Query:  RVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLG-GPSNCEFLFIYDLITHNPISLTKYLQLDNL
        RVPQS SQNQGTIRTL NRNKE QSLIILSA N LQ+DLFNDVKDY VIKESSKKDPL+SIRNSLGPLG  P    F   Y LITHNPISLTKYLQLDNL
Subjt:  RVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLG-GPSNCEFLFIYDLITHNPISLTKYLQLDNL

Query:  KQTFQVL
        KQ FQVL
Subjt:  KQTFQVL

QJF46373.1 RNA polymerase beta'' subunit [Cucumis melo]

8.9e-283

62.73

Show/hide

Query:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL
        MNPNFRMTDPFN VHIMSFS ARGNASQV QLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY ISCY ARK VVDTAVRTSDAGYLTRRLVEVVQHI+
Subjt:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL

Query:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------
        VRRTDCG+IRGI VS GNRMIP+RIFIQ LIGRVL  DIYM PRCIGVRNQDI                                               
Subjt:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS
                                                                        GGSCGCSVVPFS YKDQDQIN HS CVERRYIS+LS
Subjt:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS

Query:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF
        VNNDKV QKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISI IPINGLFRRNSILAFF
Subjt:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF

Query:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK
        DDPQ+RRNSS ITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESS IMV NNSIIGV TRLTLSIRSRVG LVRVE  KK
Subjt:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK

Query:  RIELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVNYI
        RIELKIFSGDIHF GEMDKISRHNGILIPPER                                                   DLLQERDNL+LRVVNYI
Subjt:  RIELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVNYI

Query:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR--------------------------SV
        LYGNGKPIRGI GTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKR+                            
Subjt:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR--------------------------SV

Query:  RVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLG-GPSNCEFLFIYDLITHNPISLTKYLQLDNL
        RVPQS SQNQGTIRTLFNRNKE QSLIILSA N LQMDLFNDVKDY VIKESSKKDPL+SIRNSLGPLG  P    F   YDLITHNPISLTKYLQLDNL
Subjt:  RVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLG-GPSNCEFLFIYDLITHNPISLTKYLQLDNL

Query:  KQTFQVL
        KQTFQVL
Subjt:  KQTFQVL

YP_004841773.1 RNA polymerase beta'' subunit [Cucumis melo subsp. melo]

8.9e-283

62.73

Show/hide

Query:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL
        MNPNFRMTDPFN VHIMSFS ARGNASQV QLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY ISCY ARK VVDTAVRTSDAGYLTRRLVEVVQHI+
Subjt:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL

Query:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------
        VRRTDCG+IRGI VS GNRMIP+RIFIQ LIGRVL  DIYM PRCIGVRNQDI                                               
Subjt:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS
                                                                        GGSCGCSVVPFS YKDQDQIN HS CVERRYIS+LS
Subjt:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS

Query:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF
        VNNDKV QKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISI IPINGLFRRNSILAFF
Subjt:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF

Query:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK
        DDPQ+RRNSS ITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESS IMV NNSIIGV TRLTLSIRSRVG LVRVE  KK
Subjt:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK

Query:  RIELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVNYI
        RIELKIFSGDIHF GEMDKISRHNGILIPPER                                                   DLLQERDNL+LRVVNYI
Subjt:  RIELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVNYI

Query:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR--------------------------SV
        LYGNGKPIRGI GTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKR+                            
Subjt:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR--------------------------SV

Query:  RVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLG-GPSNCEFLFIYDLITHNPISLTKYLQLDNL
        RVPQS SQNQGTIRTLFNRNKE QSLIILSA N LQMDLFNDVKDY VIKESSKKDPL+SIRNSLGPLG  P    F   YDLITHNPISLTKYLQLDNL
Subjt:  RVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLG-GPSNCEFLFIYDLITHNPISLTKYLQLDNL

Query:  KQTFQVL
        KQTFQVL
Subjt:  KQTFQVL

YP_009004034.1 RNA polymerase beta' subunit [Cucumis hystrix]

5.0e-278

61.74

Show/hide

Query:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL
        MNPNFRMTDPFN VHIMSFS ARGNASQV QLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY ISCY ARK VVDTAVRTSDAGYLTRRLVEVVQHI+
Subjt:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL

Query:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------
        VRRTDCG+IRGI VS GNRMIP+RIFIQ LIGRVL  DIYM PRCIGVRNQDI                                               
Subjt:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS
                                                                        GGSCGCS+VPFS YKDQDQIN HS CVERRYIS+LS
Subjt:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS

Query:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF
        VNNDKV QKFYGPDLSGKNE+GIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISI IPING+FRRNSILAFF
Subjt:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF

Query:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK
        DDPQ+RRNSS ITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESS IMV NNSIIGV TRLTLSIRSRVG LVRVE  KK
Subjt:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK

Query:  RIELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVNYI
        RIELKIFSGDIHF GEMDKISRHNGILIPPER                                                   DLLQERDNL+LRV NYI
Subjt:  RIELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVNYI

Query:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR--------------------------SV
        LYGNGKPIRGI GTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAY+RKR+                            
Subjt:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR--------------------------SV

Query:  RVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLG-GPSNCEFLFIYDLITHNPISLTKYLQLDNL
        RVPQS SQNQGTIRTL NRNKE QSLIILSA N LQ+DLFNDVKDY VIKESSKKDPL+SIRNSLGPLG  P    F   Y LITHNPISLTKYLQLDNL
Subjt:  RVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLG-GPSNCEFLFIYDLITHNPISLTKYLQLDNL

Query:  KQTFQVL
        KQ FQVL
Subjt:  KQTFQVL

TrEMBL top hits

e value

%identity

Alignment

A0A249RXP5 DNA-directed RNA polymerase subunit beta''

4.3e-283

62.73

Show/hide

Query:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL
        MNPNFRMTDPFN VHIMSFS ARGNASQV QLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY ISCY ARK VVDTAVRTSDAGYLTRRLVEVVQHI+
Subjt:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL

Query:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------
        VRRTDCG+IRGI VS GNRMIP+RIFIQ LIGRVL  DIYM PRCIGVRNQDI                                               
Subjt:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS
                                                                        GGSCGCSVVPFS YKDQDQIN HS CVERRYIS+LS
Subjt:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS

Query:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF
        VNNDKV QKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISI IPINGLFRRNSILAFF
Subjt:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF

Query:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK
        DDPQ+RRNSS ITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESS IMV NNSIIGV TRLTLSIRSRVG LVRVE  KK
Subjt:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK

Query:  RIELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVNYI
        RIELKIFSGDIHF GEMDKISRHNGILIPPER                                                   DLLQERDNL+LRVVNYI
Subjt:  RIELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVNYI

Query:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR--------------------------SV
        LYGNGKPIRGI GTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKR+                            
Subjt:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR--------------------------SV

Query:  RVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLG-GPSNCEFLFIYDLITHNPISLTKYLQLDNL
        RVPQS SQNQGTIRTLFNRNKE QSLIILSA N LQMDLFNDVKDY VIKESSKKDPL+SIRNSLGPLG  P    F   YDLITHNPISLTKYLQLDNL
Subjt:  RVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLG-GPSNCEFLFIYDLITHNPISLTKYLQLDNL

Query:  KQTFQVL
        KQTFQVL
Subjt:  KQTFQVL

A0A249RYA1 DNA-directed RNA polymerase subunit beta''

4.3e-283

62.73

Show/hide

Query:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL
        MNPNFRMTDPFN VHIMSFS ARGNASQV QLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY ISCY ARK VVDTAVRTSDAGYLTRRLVEVVQHI+
Subjt:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL

Query:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------
        VRRTDCG+IRGI VS GNRMIP+RIFIQ LIGRVL  DIYM PRCIGVRNQDI                                               
Subjt:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS
                                                                        GGSCGCSVVPFS YKDQDQIN HS CVERRYIS+LS
Subjt:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS

Query:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF
        VNNDKV QKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISI IPINGLFRRNSILAFF
Subjt:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF

Query:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK
        DDPQ+RRNSS ITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESS IMV NNSIIGV TRLTLSIRSRVG LVRVE  KK
Subjt:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK

Query:  RIELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVNYI
        RIELKIFSGDIHF GEMDKISRHNGILIPPER                                                   DLLQERDNL+LRVVNYI
Subjt:  RIELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVNYI

Query:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR--------------------------SV
        LYGNGKPIRGI GTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKR+                            
Subjt:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR--------------------------SV

Query:  RVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLG-GPSNCEFLFIYDLITHNPISLTKYLQLDNL
        RVPQS SQNQGTIRTLFNRNKE QSLIILSA N LQMDLFNDVKDY VIKESSKKDPL+SIRNSLGPLG  P    F   YDLITHNPISLTKYLQLDNL
Subjt:  RVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLG-GPSNCEFLFIYDLITHNPISLTKYLQLDNL

Query:  KQTFQVL
        KQTFQVL
Subjt:  KQTFQVL

A0A249RYY9 DNA-directed RNA polymerase subunit beta''

4.3e-283

62.73

Show/hide

Query:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL
        MNPNFRMTDPFN VHIMSFS ARGNASQV QLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY ISCY ARK VVDTAVRTSDAGYLTRRLVEVVQHI+
Subjt:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL

Query:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------
        VRRTDCG+IRGI VS GNRMIP+RIFIQ LIGRVL  DIYM PRCIGVRNQDI                                               
Subjt:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS
                                                                        GGSCGCSVVPFS YKDQDQIN HS CVERRYIS+LS
Subjt:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS

Query:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF
        VNNDKV QKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISI IPINGLFRRNSILAFF
Subjt:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF

Query:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK
        DDPQ+RRNSS ITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESS IMV NNSIIGV TRLTLSIRSRVG LVRVE  KK
Subjt:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK

Query:  RIELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVNYI
        RIELKIFSGDIHF GEMDKISRHNGILIPPER                                                   DLLQERDNL+LRVVNYI
Subjt:  RIELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVNYI

Query:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR--------------------------SV
        LYGNGKPIRGI GTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKR+                            
Subjt:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR--------------------------SV

Query:  RVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLG-GPSNCEFLFIYDLITHNPISLTKYLQLDNL
        RVPQS SQNQGTIRTLFNRNKE QSLIILSA N LQMDLFNDVKDY VIKESSKKDPL+SIRNSLGPLG  P    F   YDLITHNPISLTKYLQLDNL
Subjt:  RVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLG-GPSNCEFLFIYDLITHNPISLTKYLQLDNL

Query:  KQTFQVL
        KQTFQVL
Subjt:  KQTFQVL

A0A249RZW9 DNA-directed RNA polymerase subunit beta''

4.3e-283

62.73

Show/hide

Query:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL
        MNPNFRMTDPFN VHIMSFS ARGNASQV QLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY ISCY ARK VVDTAVRTSDAGYLTRRLVEVVQHI+
Subjt:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL

Query:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------
        VRRTDCG+IRGI VS GNRMIP+RIFIQ LIGRVL  DIYM PRCIGVRNQDI                                               
Subjt:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS
                                                                        GGSCGCSVVPFS YKDQDQIN HS CVERRYIS+LS
Subjt:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS

Query:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF
        VNNDKV QKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISI IPINGLFRRNSILAFF
Subjt:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF

Query:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK
        DDPQ+RRNSS ITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESS IMV NNSIIGV TRLTLSIRSRVG LVRVE  KK
Subjt:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK

Query:  RIELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVNYI
        RIELKIFSGDIHF GEMDKISRHNGILIPPER                                                   DLLQERDNL+LRVVNYI
Subjt:  RIELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVNYI

Query:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR--------------------------SV
        LYGNGKPIRGI GTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKR+                            
Subjt:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR--------------------------SV

Query:  RVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLG-GPSNCEFLFIYDLITHNPISLTKYLQLDNL
        RVPQS SQNQGTIRTLFNRNKE QSLIILSA N LQMDLFNDVKDY VIKESSKKDPL+SIRNSLGPLG  P    F   YDLITHNPISLTKYLQLDNL
Subjt:  RVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLG-GPSNCEFLFIYDLITHNPISLTKYLQLDNL

Query:  KQTFQVL
        KQTFQVL
Subjt:  KQTFQVL

A0A286NFX2 DNA-directed RNA polymerase subunit beta''

4.3e-283

62.73

Show/hide

Query:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL
        MNPNFRMTDPFN VHIMSFS ARGNASQV QLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY ISCY ARK VVDTAVRTSDAGYLTRRLVEVVQHI+
Subjt:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL

Query:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------
        VRRTDCG+IRGI VS GNRMIP+RIFIQ LIGRVL  DIYM PRCIGVRNQDI                                               
Subjt:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS
                                                                        GGSCGCSVVPFS YKDQDQIN HS CVERRYIS+LS
Subjt:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS

Query:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF
        VNNDKV QKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISI IPINGLFRRNSILAFF
Subjt:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF

Query:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK
        DDPQ+RRNSS ITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESS IMV NNSIIGV TRLTLSIRSRVG LVRVE  KK
Subjt:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK

Query:  RIELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVNYI
        RIELKIFSGDIHF GEMDKISRHNGILIPPER                                                   DLLQERDNL+LRVVNYI
Subjt:  RIELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVNYI

Query:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR--------------------------SV
        LYGNGKPIRGI GTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKR+                            
Subjt:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR--------------------------SV

Query:  RVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLG-GPSNCEFLFIYDLITHNPISLTKYLQLDNL
        RVPQS SQNQGTIRTLFNRNKE QSLIILSA N LQMDLFNDVKDY VIKESSKKDPL+SIRNSLGPLG  P    F   YDLITHNPISLTKYLQLDNL
Subjt:  RVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLG-GPSNCEFLFIYDLITHNPISLTKYLQLDNL

Query:  KQTFQVL
        KQTFQVL
Subjt:  KQTFQVL

SwissProt top hits

e value

%identity

Alignment

B1A925 DNA-directed RNA polymerase subunit beta''

3.3e-216

50.66

Show/hide

Query:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL
        MNPNFR+TDPFN VHIMSFS ARGNASQV QLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY ISCY ARK VVDTAVRTSDAGYLTRRLVEVVQHI+
Subjt:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL

Query:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------
        VRRTDCG+IRGI VS  NR +P+RIFIQ LIGRVL  DIYM PRCI +RNQDI                                               
Subjt:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS
                                                                        GGS   S+VPFS +KDQDQ+N HS  VE+  IS+L+
Subjt:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS

Query:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF
        VNND+ R KF+  + S K + GIPDYSE + IL TG  NL Y A  H NSDLLAKRRRN FII F+S+QE+EKEL P SGISI IPING+FRRNSILAFF
Subjt:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF

Query:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVENKKR
        DDP++RR SS I KYGTIG HSI+KKED+IEYRGVK FK KY  QMKVDRFFFIPEEVHILPESS IMV NNSIIGV TR+TL+IRS+VG LVRVE KK+
Subjt:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVENKKR

Query:  -IELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVNYI
         IEL+IFSGDIHF G+ DKISRH+GILIPP R                                                   DL +E+DN+ LRVVNYI
Subjt:  -IELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVNYI

Query:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDT--AYMRKRR---------------------SVRVP
        LYGNGKP+RGI  TSIQLVRTCL+LNWD+D KSSS+E+ R  FVEVSTN L+R+FLRIDL KS +  +Y+RKR                        R+ 
Subjt:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDT--AYMRKRR---------------------SVRVP

Query:  QSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLGGPSN-CEFLFIYDLITHNPISLTKYLQLDNLKQT
        QSLS+N GTIRTL NRNKE QSLIILS+ N  QM  FN VK + VIK+S KKDPL+ IRNSLGP+G       F  IY LITHN IS+TKY QLDNL Q 
Subjt:  QSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLGGPSN-CEFLFIYDLITHNPISLTKYLQLDNLKQT

Query:  FQVL
        F+V+
Subjt:  FQVL

B1NWE0 DNA-directed RNA polymerase subunit beta''

1.2e-216

50.11

Show/hide

Query:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL
        MN NFRMT+PFN VHIMSFS ARGN SQV QLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY ISCY ARK VVDTAVRTSDAGYLTRRLVEVVQHI+
Subjt:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL

Query:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------
        VRRTDCG+ RGI VS  N M+P+RIFIQ  IGRVL  +IYM  RCI +RNQDI                                               
Subjt:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS
                                                                        G SC  S+VPFS +KDQDQ+N HS  V+RRYIS+ S
Subjt:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS

Query:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF
        VNND+V+ KF+  D SGK ESGIPDYSELN  +CTG  NL Y  I + NSDLLAKRRRN FII F+S+QEREKEL   S ISI IPING+FRRNS+ A+F
Subjt:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF

Query:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK
        DDPQ+R+ SS ITKYG IGVHSI+KKEDLIEYRGVK+FKPKY  Q KVDRFFFIPEEV+ILPESS +MV NNSIIGV T++ L+ RSRVG LVRVE  KK
Subjt:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK

Query:  RIELKIFSGDIHFLGEMDKISRHNGILIPP---------------------------------------------------ERDLLQERDNLDLRVVNYI
        ++ELKIFSGDIHF GE DKISRH+ ILIPP                                                    +DLLQE+DNL LRVVNYI
Subjt:  RIELKIFSGDIHFLGEMDKISRHNGILIPP---------------------------------------------------ERDLLQERDNLDLRVVNYI

Query:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRRS---------------------------
        LYG GKPIRGI  TSIQLVRTCL+LNWD+DKKSSSIE+ARA+FVE+STNGL+R+FLRI+L K   +Y+ ++R+                           
Subjt:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRRS---------------------------

Query:  VRVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLGGP---SNCEFLFIYDLITHNPISLTKYLQL
         RV QSL QNQGTI TL N NKE QSLIILS+ N  QMD FNDVK + VIKES K+DP++ IRNSLGPLG     +N    +  +LITHN IS+TKY +L
Subjt:  VRVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLGGP---SNCEFLFIYDLITHNPISLTKYLQL

Query:  DNLKQTFQVL
         NLKQTFQVL
Subjt:  DNLKQTFQVL

Q2VEI6 DNA-directed RNA polymerase subunit beta''

7.0e-214

49.83

Show/hide

Query:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL
        MNPNFRMTDPFN VHIMSFS ARGNASQV QLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY ISCY ARK VVDTAVRTSDAGYLTRRLVEVVQHI+
Subjt:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL

Query:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------
        VRRTDCG+ RGI VS  N ++P+RIF Q LIGRVL  DIYM  RCI  RNQ I                                               
Subjt:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS
                                                                        GG C  S+V  S +KDQDQ+N HS   +RRY SNLS
Subjt:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS

Query:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF
        V ND+ RQK +  D  G+ E  IPDYS+LN I+CTGQ NL Y  I HGNSDLL+KRRRN FII   S+QE E EL P SGISI IP+NG+FRRNSILA+F
Subjt:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF

Query:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK
        DDP++RR SS I KYGTI  HS++KKEDLIEYRGVK+F+PKY  QMKVDRFFFIPEEVHILP SS IMV NNSI+GV T++TL++RSRVG LVRVE  KK
Subjt:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK

Query:  RIELKIFSGDIHFLGEMDKISRHNGILIPP---------------------------------------------------ERDLLQERDNLDLRVVNYI
        RIELKIFSGDIHF GE DKISRH G+LIPP                                                     D LQERDN+ LR+VNYI
Subjt:  RIELKIFSGDIHFLGEMDKISRHNGILIPP---------------------------------------------------ERDLLQERDNLDLRVVNYI

Query:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR----------------------------
        LYGNGKPIRGI  TSIQLVRTCL+LNW++DKKSSS E+ARASFVE+ TNGL+R+FLRI+L KS  +Y+ KR                             
Subjt:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR----------------------------

Query:  SVRVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLGGPSNCE-FLFIYDLITHNPISLTKYLQLD
          ++ QSL+Q QGTI TL NRNKE QSLIILSA N  +M+ F DVK + VIKES KKDPL+ IRNSLGPLG     E F   Y LITHN I +TKYLQLD
Subjt:  SVRVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLGGPSNCE-FLFIYDLITHNPISLTKYLQLD

Query:  NLKQTFQVL
        NLKQTFQV+
Subjt:  NLKQTFQVL

Q49L08 DNA-directed RNA polymerase subunit beta''

2.7e-213

50.06

Show/hide

Query:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL
        MNPNFRMTDPFN VHIMSFS ARGNASQV QLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY ISCY ARK VVDTAVRTSDAGYLTRRLVEVVQHI+
Subjt:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL

Query:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------
        VRRTDCG+IRG+ VS  N M+P+RIFIQ LIGRVL  DIYM PRCI +RNQDI                                               
Subjt:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS
                                                                        GGSC  S VPFS YKDQDQ+N  S   ERRYIS+LS
Subjt:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS

Query:  VNNDKVRQKFYGPDLSGK-NESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAF
        VNND++R +    D SGK  E  IPDYSELN I+     NL YP  F  NSDLLAKRRRN F+I  +S+QER+KEL P SGISI +PING+ RRNSILA+
Subjt:  VNNDKVRQKFYGPDLSGK-NESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAF

Query:  FDDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NK
        FDDP++RR SS I KYGT+GVHS++KKEDLIEYRG+K+FK K   QMK+D FFFIPEEVHI PESS IMV NNS+IGV TR+ L+ RSRVG LVRVE  K
Subjt:  FDDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NK

Query:  KRIELKIFSGDIHFLGEMDKISRHNGILIPP---------------------------------------------------ERDLLQERDNLDLRVVNY
        KRIELKIFSGDIHF GE DKISRH+GILIPP                                                     DLLQERDN+ LRVVNY
Subjt:  KRIELKIFSGDIHFLGEMDKISRHNGILIPP---------------------------------------------------ERDLLQERDNLDLRVVNY

Query:  ILYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR-------------------------SV
        I+Y NGKPIRGI  TSIQLVRTCL+LNWD+DKKSSSIE+A  SFVEVSTNGL+R+FLRIDL K   +Y+RKR                            
Subjt:  ILYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR-------------------------SV

Query:  RVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLGGPSN-CEFLFIYDLITHNPISLTKYLQLDNL
        ++ Q LSQNQGTIRTL N+NKE  SLIILS+ N  +M  FN  K + VIKES KKDP++ IRNS+GPLG       F   Y LITHNPI +TKYLQL+NL
Subjt:  RVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLGGPSN-CEFLFIYDLITHNPISLTKYLQLDNL

Query:  KQTFQVL
        KQTFQV+
Subjt:  KQTFQVL

Q4VZP3 DNA-directed RNA polymerase subunit beta''

6.6e-281

61.74

Show/hide

Query:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL
        MNPNFRMTDPFN VHIMSFS ARGNASQV QLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY ISCY ARK VVDTAVRTSDAGYLTRRLVEVVQHI+
Subjt:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL

Query:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------
        VRRTDCG+IRGI VS GNRMIP+RIFIQ LIGRVL  DIYM PRCIGVRNQDI                                               
Subjt:  VRRTDCGSIRGIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI-----------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS
                                                                        GGSCGCS+VPFS YKDQDQIN HS CVERRYIS+LS
Subjt:  ----------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLS

Query:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF
        VNNDKV QKFYGPDLSGKNE+GIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISI IPING+FRRNSILAFF
Subjt:  VNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFF

Query:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK
        DDPQ+RRNSS ITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESS IMV NNSIIGV TRLTLSIRSRVG LVRVE  KK
Subjt:  DDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-NKK

Query:  RIELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVNYI
        RIELKIFSGDIHF GEMDKISRHNGILIPPER                                                   DLLQERDNL+LRV NYI
Subjt:  RIELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVNYI

Query:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR--------------------------SV
        LYGNGKPIRGI GTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAY+RKR+                            
Subjt:  LYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRR--------------------------SV

Query:  RVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLG-GPSNCEFLFIYDLITHNPISLTKYLQLDNL
        RVPQS SQNQGTIRTL NRNKE QSLIILSA N LQ+DLFNDVKDY VIKESSKKDPL+SIRNSLGPLG  P    F   Y LITHNPISLTKYLQLDNL
Subjt:  RVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLG-GPSNCEFLFIYDLITHNPISLTKYLQLDNL

Query:  KQTFQVL
        KQ FQVL
Subjt:  KQTFQVL

Arabidopsis top hits

e value

%identity

Alignment

ATCG00170.1 DNA-directed RNA polymerase family protein

3.9e-196

47.18

Show/hide

Query:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL
        MNPNFRMTDPFN VH+MSFS ARGNASQV QLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEY ISCY ARK VVDTAVRTSDAGYLTRRLVEVVQHI+
Subjt:  MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHIL

Query:  VRRTDCGSIRGIDVS--LGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI---------------------------------------------
        VRRTDCG+IRGI VS    NRM+ +RIFIQ LIGRVL  DIY+  RC+  RNQD+                                             
Subjt:  VRRTDCGSIRGIDVS--LGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDI---------------------------------------------

Query:  ----------------------------------------------------------------------------------------------------
                                                                                                            
Subjt:  ----------------------------------------------------------------------------------------------------

Query:  ------------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISN
                                                                          GGSCG S++ FS +KDQDQ+N      ER+ IS+
Subjt:  ------------------------------------------------------------------GGSCGCSVVPFSFYKDQDQINFHSFCVERRYISN

Query:  LSVNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILA
        LSVNND+V QKF+  D +   + GI DYSELN  L T   NL Y AIFH NSDLLAKRRRN F+I F+S+QE+EKE  P SGIS+ IPING+FRRNSI A
Subjt:  LSVNNDKVRQKFYGPDLSGKNESGIPDYSELNPILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILA

Query:  FFDDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-N
        FFDDP++RR SS I KYGT+   SI++KED+IEYRGV+  K KY  +MKVDRFFFIPEEVHILPESS IMV N SIIGV TRLTL+IRS+VG L+RVE  
Subjt:  FFDDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPKYQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVE-N

Query:  KKRIELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVN
        KKRIELKIFSGDIHF  + DKISRH+GILIPP R                                                   DL +E+DN+ LRV N
Subjt:  KKRIELKIFSGDIHFLGEMDKISRHNGILIPPER---------------------------------------------------DLLQERDNLDLRVVN

Query:  YILYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKR----------------------RSVRV
        YILYGNGKP RGI  TSIQLVRTCL+LNWD   K+SS+E+ RA FVEVST GL+++F+RI L KS  +Y+RKR                      +S  +
Subjt:  YILYGNGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKR----------------------RSVRV

Query:  PQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLGGPSN-CEFLFIYDLITHNPISLTKYLQLDNLKQ
         QSL QN GTIR   NRNKE QSL+ILS+ N  +M  FN VK + VI +S KK+ L++I+NS GPLG  +    F     L+T+N ISL KY QLDNLK 
Subjt:  PQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDLFNDVKDYIVIKESSKKDPLLSIRNSLGPLGGPSN-CEFLFIYDLITHNPISLTKYLQLDNLKQ

Query:  TFQ
         FQ
Subjt:  TFQ

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGAATCCTAATTTTAGGATGACTGACCCTTTTAATCTAGTCCATATAATGTCTTTTTCGAGAGCTCGAGGAAATGCATCTCAAGTAGACCAATTAGTAGGTATGAGAGG
ATTAATGTCAGATCCACAAGGACAAATGATTGATTTACCCATTCAAAGCAATTTACGTGAGGGGCTGTCCTTAACGGAATATAGAATTTCTTGCTATCGAGCGCGGAAAA
GAGTTGTGGATACTGCTGTACGAACATCAGATGCTGGATATCTTACACGTAGACTTGTTGAAGTAGTTCAACACATTCTTGTACGTAGAACCGATTGTGGAAGCATTCGA
GGGATTGACGTGAGTCTTGGAAATAGGATGATTCCAAAAAGAATTTTTATCCAAAGATTAATTGGTCGTGTATTAGTGGGCGATATATATATGTGCCCGCGATGCATTGG
CGTTCGAAATCAAGATATTGGAGGTTCGTGCGGATGTAGTGTAGTCCCTTTTTCATTCTACAAGGATCAAGATCAAATTAACTTTCATTCTTTTTGTGTCGAAAGAAGAT
ATATTTCTAACCTTTCAGTAAATAATGATAAAGTGAGACAAAAATTTTATGGTCCAGATCTTTCTGGTAAAAACGAAAGCGGAATTCCTGATTATTCAGAACTTAATCCA
ATCCTATGTACGGGTCAATCTAATCTCACATATCCTGCTATTTTCCACGGTAATTCTGATTTATTGGCAAAGAGGCGAAGAAATGGATTCATCATTCAATTTGAATCACT
TCAAGAACGAGAAAAAGAACTACGACCCCCTTCCGGTATTTCGATTTCAATACCCATAAATGGTCTTTTTCGTAGAAATAGTATTCTTGCTTTTTTCGATGATCCTCAAC
ACAGAAGAAATAGTTCAAGAATTACTAAATATGGGACTATAGGGGTGCATTCAATCCTAAAAAAGGAGGATTTGATTGAGTATCGAGGAGTCAAAGACTTTAAGCCAAAA
TACCAAATGCAAATGAAAGTGGATCGATTTTTTTTCATTCCCGAGGAAGTGCATATTTTACCAGAATCTTCTTTCATAATGGTATGGAACAATAGTATCATTGGAGTAGT
TACACGACTAACTTTAAGTATAAGAAGTCGAGTAGGCAGATTGGTCCGAGTGGAGAACAAAAAAAGGATTGAACTCAAAATATTTTCTGGAGATATACATTTTCTTGGAG
AGATGGATAAGATATCCCGACACAATGGCATCTTGATACCACCAGAAAGAGATCTATTGCAAGAAAGGGATAATCTGGATCTTAGAGTTGTCAATTATATACTTTATGGA
AATGGAAAACCAATTCGGGGAATTGATGGCACAAGCATTCAATTAGTTCGGACTTGTTTATTGTTGAATTGGGACCGAGACAAAAAAAGCTCTTCTATCGAAGACGCGCG
TGCTTCCTTTGTTGAAGTAAGTACAAATGGTCTGGTTCGAAATTTTCTACGAATAGACTTGGGGAAATCCGATACTGCGTATATGAGAAAAAGGAGATCCGTCAGGGTTC
CACAATCTCTGAGTCAAAATCAAGGAACTATTCGTACGTTGTTCAATAGAAATAAGGAAGGCCAATCTTTGATAATTTTGTCAGCATTGAATTTTTTGCAAATGGATCTA
TTCAACGATGTAAAAGATTATATTGTCATAAAAGAATCAAGTAAAAAGGATCCTCTACTTTCAATTAGGAATTCGTTAGGACCTTTAGGGGGCCCCTCAAATTGTGAATT
TTTATTCATTTATGACTTAATAACTCATAATCCGATCTCCCTAACTAAATATTTGCAACTTGACAATTTAAAACAGACTTTTCAAGTACTTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MNPNFRMTDPFNLVHIMSFSRARGNASQVDQLVGMRGLMSDPQGQMIDLPIQSNLREGLSLTEYRISCYRARKRVVDTAVRTSDAGYLTRRLVEVVQHILVRRTDCGSIR
GIDVSLGNRMIPKRIFIQRLIGRVLVGDIYMCPRCIGVRNQDIGGSCGCSVVPFSFYKDQDQINFHSFCVERRYISNLSVNNDKVRQKFYGPDLSGKNESGIPDYSELNP
ILCTGQSNLTYPAIFHGNSDLLAKRRRNGFIIQFESLQEREKELRPPSGISISIPINGLFRRNSILAFFDDPQHRRNSSRITKYGTIGVHSILKKEDLIEYRGVKDFKPK
YQMQMKVDRFFFIPEEVHILPESSFIMVWNNSIIGVVTRLTLSIRSRVGRLVRVENKKRIELKIFSGDIHFLGEMDKISRHNGILIPPERDLLQERDNLDLRVVNYILYG
NGKPIRGIDGTSIQLVRTCLLLNWDRDKKSSSIEDARASFVEVSTNGLVRNFLRIDLGKSDTAYMRKRRSVRVPQSLSQNQGTIRTLFNRNKEGQSLIILSALNFLQMDL
FNDVKDYIVIKESSKKDPLLSIRNSLGPLGGPSNCEFLFIYDLITHNPISLTKYLQLDNLKQTFQVL

Cmc07g0186481 (gene) of Melon (Charmono) v1.1 genome