CuGenDBv2

Gene ID	Cmc07g0186491
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	DNA-directed RNA polymerase subunit beta''
Genome location	CMiso1.1chr07:4398156..4399116
RNA-Seq Expression	Cmc07g0186491
Synteny	Cmc07g0186491
Gene Ontology terms	GO:0006351 - transcription, DNA-templated (biological process) GO:0009536 - plastid (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function) GO:0046872 - metal ion binding (molecular function)
InterPro domains	IPR007081 - RNA polymerase Rpb1, domain 5

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

QHB75953.1 RNA polymerase beta II subunit [Cucumis melo subsp. melo]

1.4e-123

75.94

Show/hide

Query:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL
        MDE+GGIFN DPCSNIVFNTFNLNWHFLHHN HNNYCEERPTRISL Q FF+                                     +    HYGEIL
Subjt:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL

Query:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI
        YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEV SIDSISMSLEKRIEGWNE                    +QSRISLVNKIQKVYRSQGVEIHNRHI+I
Subjt:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI

Query:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP
        IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI KASLNTQSFISE+SFQETARVLAKAALRGRIDW RGLKEN+VLGGMIP
Subjt:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP

Query:  VGTGFRELAHPSRQHKNIPL
        VGTGFRELAH SRQH NIPL
Subjt:  VGTGFRELAHPSRQHKNIPL

QIT04040.1 RNA polymerase beta'' subunit [Luffa aegyptiaca]

1.3e-121

Show/hide

Query:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL
        MDE+GGI N DPCSNIVFNTFNLNWHFLHHN HN+YCEE PTRISL Q FF+                                     +    HYGEIL
Subjt:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL

Query:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI
        YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEV SIDSISMSLEKRIEGWNE                    +QSRISLVNKIQKVYRSQGVEIHNRHI+I
Subjt:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI

Query:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP
        IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI KASLNTQSFISE+SFQETARVLAKAALRGRIDW RGLKEN+VLGGMIP
Subjt:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP

Query:  VGTGFRELAHPSRQHKNIPL
        VGTGFRELAH SRQH NIPL
Subjt:  VGTGFRELAHPSRQHKNIPL

YP_009456136.1 RNA polymerase beta'' subunit [Lagenaria siceraria]

1.3e-121

Show/hide

Query:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL
        MDE+GGIFN DPCSNIVFNTFNLNWHFLHHN H+NYCEE P RISL Q FF+                                     +    HYGEIL
Subjt:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL

Query:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI
        YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEV SIDSISMSLEKRIEGWNE                    +QSRISLVNKIQKVYRSQGVEIHNRHI+I
Subjt:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI

Query:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP
        IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI KASLNTQSFISE+SFQETARVLAKAALRGRIDW RGLKEN+VLGGMIP
Subjt:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP

Query:  VGTGFRELAHPSRQHKNIPL
        VGTGFRELAH SRQH NIPL
Subjt:  VGTGFRELAHPSRQHKNIPL

YP_009751980.1 RNA polymerase beta'' subunit [Cionosicys macranthus]

2.2e-121

74.38

Show/hide

Query:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL
        MDE+GG+ N DPCSNIVFNTFNLNWHFLHHN H+NYCEE PTRISL Q FF+                                     +    HYGEIL
Subjt:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL

Query:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI
        YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEV S+DSISMSLEKRIEGWNE                    +QSRISLVNKIQKVYRSQGVEIHNRHI+I
Subjt:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI

Query:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP
        IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI KASLNTQSFISE+SFQETARVLAKAALRGRIDW RGLKEN+VLGGMIP
Subjt:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP

Query:  VGTGFRELAHPSRQHKNIPL
        VGTGFRELAH SRQH NIPL
Subjt:  VGTGFRELAHPSRQHKNIPL

YP_009753864.1 RNA polymerase beta'' subunit [Trichosanthes lobata]

9.8e-122

Show/hide

Query:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL
        MDE+GGIFN DPCSNIVFNTFNLNWHFLHHN H++YCEE PTRISL Q FF+                                     +    HYGEIL
Subjt:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL

Query:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI
        YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEV SIDSISMSLEKRIEGWNE                    +QSRISLVNKIQKVYRSQGVEIHNRHI+I
Subjt:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI

Query:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP
        IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI KASLNTQSFISE+SFQETARVLAKAALRGRIDW RGLKEN+VLGGMIP
Subjt:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP

Query:  VGTGFRELAHPSRQHKNIPL
        VGTGFRELAH SRQH NIPL
Subjt:  VGTGFRELAHPSRQHKNIPL

TrEMBL top hits

e value

%identity

Alignment

A0A2I6C070 DNA-directed RNA polymerase subunit beta''

6.2e-122

Show/hide

Query:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL
        MDE+GGIFN DPCSNIVFNTFNLNWHFLHHN H+NYCEE P RISL Q FF+                                     +    HYGEIL
Subjt:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL

Query:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI
        YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEV SIDSISMSLEKRIEGWNE                    +QSRISLVNKIQKVYRSQGVEIHNRHI+I
Subjt:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI

Query:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP
        IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI KASLNTQSFISE+SFQETARVLAKAALRGRIDW RGLKEN+VLGGMIP
Subjt:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP

Query:  VGTGFRELAHPSRQHKNIPL
        VGTGFRELAH SRQH NIPL
Subjt:  VGTGFRELAHPSRQHKNIPL

A0A6B9M016 DNA-directed RNA polymerase subunit beta''

6.6e-124

75.94

Show/hide

Query:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL
        MDE+GGIFN DPCSNIVFNTFNLNWHFLHHN HNNYCEERPTRISL Q FF+                                     +    HYGEIL
Subjt:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL

Query:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI
        YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEV SIDSISMSLEKRIEGWNE                    +QSRISLVNKIQKVYRSQGVEIHNRHI+I
Subjt:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI

Query:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP
        IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI KASLNTQSFISE+SFQETARVLAKAALRGRIDW RGLKEN+VLGGMIP
Subjt:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP

Query:  VGTGFRELAHPSRQHKNIPL
        VGTGFRELAH SRQH NIPL
Subjt:  VGTGFRELAHPSRQHKNIPL

A0A6H0EPT4 DNA-directed RNA polymerase subunit beta''

6.2e-122

Show/hide

Query:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL
        MDE+GGI N DPCSNIVFNTFNLNWHFLHHN HN+YCEE PTRISL Q FF+                                     +    HYGEIL
Subjt:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL

Query:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI
        YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEV SIDSISMSLEKRIEGWNE                    +QSRISLVNKIQKVYRSQGVEIHNRHI+I
Subjt:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI

Query:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP
        IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI KASLNTQSFISE+SFQETARVLAKAALRGRIDW RGLKEN+VLGGMIP
Subjt:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP

Query:  VGTGFRELAHPSRQHKNIPL
        VGTGFRELAH SRQH NIPL
Subjt:  VGTGFRELAHPSRQHKNIPL

A0A6H0ETZ5 DNA-directed RNA polymerase subunit beta''

4.8e-122

Show/hide

Query:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL
        MDE+GGIFN DPCSNIVFNTFNLNWHFLHHN H++YCEE PTRISL Q FF+                                     +    HYGEIL
Subjt:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL

Query:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI
        YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEV SIDSISMSLEKRIEGWNE                    +QSRISLVNKIQKVYRSQGVEIHNRHI+I
Subjt:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI

Query:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP
        IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI KASLNTQSFISE+SFQETARVLAKAALRGRIDW RGLKEN+VLGGMIP
Subjt:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP

Query:  VGTGFRELAHPSRQHKNIPL
        VGTGFRELAH SRQH NIPL
Subjt:  VGTGFRELAHPSRQHKNIPL

A0A7G9IT27 DNA-directed RNA polymerase subunit beta''

6.2e-122

Show/hide

Query:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL
        MDE+GGIFN DPCSNIVFNTFNLNWHFLHHN H+NYCEE P RISL Q FF+                                     +    HYGEIL
Subjt:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL

Query:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI
        YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEV SIDSISMSLEKRIEGWNE                    +QSRISLVNKIQKVYRSQGVEIHNRHI+I
Subjt:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI

Query:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP
        IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI KASLNTQSFISE+SFQETARVLAKAALRGRIDW RGLKEN+VLGGMIP
Subjt:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP

Query:  VGTGFRELAHPSRQHKNIPL
        VGTGFRELAH SRQH NIPL
Subjt:  VGTGFRELAHPSRQHKNIPL

SwissProt top hits

e value

%identity

Alignment

Q09FX1 DNA-directed RNA polymerase subunit beta''

5.8e-109

67.81

Show/hide

Query:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFK---MSNYS---------------------------------CHYGEIL
        MDE+G I+N DPCSN++ N FN NW+FLHH    +YCEE  T ISL Q F +   +S Y                                   HYGEIL
Subjt:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFK---MSNYS---------------------------------CHYGEIL

Query:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI
        Y+GDTLVTFIYEKSRSGDITQGLPKVEQVLEV SIDSISM+LEKR+EGWNE                     QSR+SLVNKIQKVYRSQGV+IHNRHI+I
Subjt:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI

Query:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP
        IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI +ASLNTQSFISE+SFQETARVLAKAALRGRIDW +GLKEN+VLGGMIP
Subjt:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP

Query:  VGTGFRELAHPSRQHKNIPL
        VGTGF+ L H S QH NI L
Subjt:  VGTGFRELAHPSRQHKNIPL

Q09G56 DNA-directed RNA polymerase subunit beta''

1.4e-110

68.12

Show/hide

Query:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL
        MDE+G I+N DPCSNI+FN FNLNW+FLHH    +YCEE  T ISL Q F +                                     +    HYGEIL
Subjt:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL

Query:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI
        Y+GDTLVTFIYEKSRSGDITQGLPKVEQVLEV SIDSISM+LE R+EGWNE                     QSRISLVNKIQKVYRSQGV+IHNRHI+I
Subjt:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI

Query:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP
        IVRQITSKVLVSEDGMSNVFSPGELIGL RAERTGRALEEAICYRAVLLGI +ASLNTQSFISE+SFQETARVLAKAALRGRIDW +GLKEN+VLGGMIP
Subjt:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP

Query:  VGTGFRELAHPSRQHKNIPL
        VGTGF+ L H SR+H NIPL
Subjt:  VGTGFRELAHPSRQHKNIPL

Q09X27 DNA-directed RNA polymerase subunit beta''

1.6e-111

68.12

Show/hide

Query:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL
        MDE+G I+N DPCSNI+FN FNLNWHFLHH    NYCE++ T ISL Q FF+                                     +    HYGEIL
Subjt:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL

Query:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI
         EGDTLVTFIYEKSRSGDITQGLPKVEQVLEV SIDSISM+LEKR+EGWNE                    +QSRISLVNKIQKVYRSQGV+IHNRHI+I
Subjt:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI

Query:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP
        IVRQITSKVLVSEDGMSNVF PGELIGL RAERTGRAL+EAICY+A+LLGI KASLNTQSFISE+SFQETARVLAKAALRGRIDW +GLKEN+VLGGMIP
Subjt:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP

Query:  VGTGFRELAHPSRQHKNIPL
        VGTGF+ L H S+QH NIPL
Subjt:  VGTGFRELAHPSRQHKNIPL

Q49L08 DNA-directed RNA polymerase subunit beta''

2.8e-111

68.44

Show/hide

Query:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL
        MDE+G I N D CSNIV N+FNLNW+FLHHN ++NY EER T ISL Q   +                                     +    HYGEIL
Subjt:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL

Query:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI
        YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEV SIDSISM+LEKRIEGWNE                    +QSRISLVNKIQKVYRSQGV+IHNRHI+I
Subjt:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI

Query:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP
        IVRQITSKVLVSEDGMSNVF PGELIGLLRA RTGRALEE+ICYRA+LLGI +ASLNTQSFISE+SFQETARVLAKAALRGRIDW +GLKEN+V+GGMIP
Subjt:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP

Query:  VGTGFRELAHPSRQHKNIPL
        VGTGF+ L H SRQHKNIPL
Subjt:  VGTGFRELAHPSRQHKNIPL

Q4VZP3 DNA-directed RNA polymerase subunit beta''

2.4e-123

74.69

Show/hide

Query:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL
        MDE+GGI N DPC NIVFNTFNLNWHFLH N HNNYCEE PTRISL Q FF+                                     +    HYGEIL
Subjt:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL

Query:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI
        YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEV SIDSISMSLEKRIEGWNE                    +QSRISLVNKIQKVYRSQGVEIHNRHI+I
Subjt:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI

Query:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP
        IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGI KASLNTQSFISE+SFQETARVLAKAALRGRIDW RGLKEN+VLGGMIP
Subjt:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP

Query:  VGTGFRELAHPSRQHKNIPL
        VGTGFRELAH SRQH NIPL
Subjt:  VGTGFRELAHPSRQHKNIPL

Arabidopsis top hits

e value

%identity

Alignment

AT4G35800.1 RNA polymerase II large subunit

9.5e-06

33.75

Show/hide

Query:  EAICYRAVLLGIRKASLNTQSF--ISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIPVGTGFRELAHPSRQHKN
        + + YR  L+ I +  +N      +   SF+ET  +L  AA     D  RG+ EN++LG + P+GTG  EL       KN
Subjt:  EAICYRAVLLGIRKASLNTQSF--ISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIPVGTGFRELAHPSRQHKN

ATCG00170.1 DNA-directed RNA polymerase family protein

1.2e-106

66.04

Show/hide

Query:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL
        +DE+G I N DP SN+V N F LNW+FLH N H+NYCEE  T ISL Q F +                                     +    HY EIL
Subjt:  MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKM------------------------------------SNYSCHYGEIL

Query:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI
        YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEV SIDSIS++LEKRI+GWN+                    +QSRISLVNKIQKVYRSQGV+IHNRHI+I
Subjt:  YEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRIEGWNE--------------------LQSRISLVNKIQKVYRSQGVEIHNRHIKI

Query:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP
        IVRQITSKVLVSE+GMSNVF PGELIGLLRAERTGRALEEAICYRAVLLGI +ASLNTQSFISE+SFQETARVLAKAALRGRIDW +GLKEN+VLGG+IP
Subjt:  IVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAKAALRGRIDWFRGLKENLVLGGMIP

Query:  VGTGFRE-LAHPSRQHKNIPL
         GTGF + L H SRQH NI L
Subjt:  VGTGFRE-LAHPSRQHKNIPL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATGAAGACGGGGGGATTTTCAATTTCGATCCATGCAGCAACATTGTTTTCAATACATTTAATTTGAATTGGCATTTTCTGCATCATAATTCTCACAATAATTATTG
TGAAGAAAGACCTACAAGAATTAGTCTTGAACAGATTTTTTTCAAAATGAGCAACTATTCATGTCATTATGGCGAAATCCTTTACGAAGGAGATACTTTAGTTACATTTA
TATATGAAAAATCACGATCTGGTGATATAACGCAGGGTCTTCCAAAAGTCGAACAAGTATTAGAAGTGCCTTCGATTGATTCAATATCGATGAGCCTAGAAAAGAGAATT
GAGGGTTGGAACGAGCTGCAAAGTCGTATCTCTTTGGTTAATAAGATCCAAAAGGTTTATCGATCCCAGGGGGTGGAGATCCATAATAGACATATCAAAATTATTGTACG
TCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTCACCTGGAGAACTCATTGGGTTGTTACGAGCGGAACGAACAGGGCGTGCTTTGGAAG
AAGCGATCTGTTATCGAGCCGTATTATTGGGAATAAGGAAAGCATCTCTAAATACTCAAAGTTTCATATCGGAATCAAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAA
GCCGCCCTCCGAGGTCGTATCGATTGGTTCAGAGGTTTGAAAGAGAACCTTGTTCTAGGAGGAATGATACCAGTTGGTACCGGATTCAGAGAATTAGCGCACCCTTCGAG
GCAACATAAAAATATTCCTTTATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDEDGGIFNFDPCSNIVFNTFNLNWHFLHHNSHNNYCEERPTRISLEQIFFKMSNYSCHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVPSIDSISMSLEKRI
EGWNELQSRISLVNKIQKVYRSQGVEIHNRHIKIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGIRKASLNTQSFISESSFQETARVLAK
AALRGRIDWFRGLKENLVLGGMIPVGTGFRELAHPSRQHKNIPL

Cmc07g0186491 (gene) of Melon (Charmono) v1.1 genome