CuGenDBv2

Gene ID	Cmc07g0186631
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Photosystem II protein D1
Genome location	CMiso1.1chr07:4558537..4558818
RNA-Seq Expression	Cmc07g0186631
Synteny	Cmc07g0186631
Gene Ontology terms	GO:0009635 - response to herbicide (biological process) GO:0009772 - photosynthetic electron transport in photosystem II (biological process) GO:0009523 - photosystem II (cellular component) GO:0009535 - chloroplast thylakoid membrane (cellular component) GO:0005506 - iron ion binding (molecular function) GO:0010242 - oxygen evolving activity (molecular function) GO:0016168 - chlorophyll binding (molecular function) GO:0016682 - oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor (molecular function) GO:0045156 - electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity (molecular function)
InterPro domains	IPR000484 - Photosynthetic reaction centre, L/M IPR036854 - Photosystem II protein D1/D2 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

OMP12461.1 Photosynthetic reaction centre, L/M [Corchorus olitorius]

4.8e-31

77.17

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Query:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFHR--CSWCIRGISIQSYAWFL
        MGREW+LSFRLG RPWI V YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVFQAEHNIL+HPFH    +    G     YAWFL
Subjt:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFHR--CSWCIRGISIQSYAWFL

PHT29345.1 Photosystem II protein D1 [Capsicum baccatum]

9.0e-30

91.67

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Query:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFH
        MGREW+LSFRLG RPWIVV YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVFQAEHNIL+HPFH
Subjt:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFH

RZC89854.1 hypothetical protein C5167_035851 [Papaver somniferum]

2.4e-30

93.06

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Query:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFH
        MGREW+LSFRLG RPWIVVTYSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVFQAEHNIL+HPFH
Subjt:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFH

VVW90934.1 unnamed protein product [Nymphaea colorata]

4.6e-34

79.79

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Query:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFHR--CSWCIRGISIQSYAWFLGH
        MGREW+LSFRLG RPWI V YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVFQAEHNIL+HPFH    +   R +SIQ YAWFLG+
Subjt:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFHR--CSWCIRGISIQSYAWFLGH

XP_037491792.1 LOW QUALITY PROTEIN: photosystem II protein D1-like [Jatropha curcas]

5.3e-30

76.34

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Query:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFHRCSWC-IRGISIQSYAWFLGH
        MGREW+LSFRLG RPWI V YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVFQAEHNIL+HPFH      + G S+ S   FLG+
Subjt:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFHRCSWC-IRGISIQSYAWFLGH

TrEMBL top hits

e value

%identity

Alignment

A0A1R3KZE5 Photosynthetic reaction centre, L/M

2.3e-31

77.17

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Query:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFHR--CSWCIRGISIQSYAWFL
        MGREW+LSFRLG RPWI V YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVFQAEHNIL+HPFH    +    G     YAWFL
Subjt:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFHR--CSWCIRGISIQSYAWFL

A0A2K2CNR4 Photosystem II protein D1

4.4e-30

91.67

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Query:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFH
        MGREW+LSFRLG RPWI V YSAPVAAATVVFLIY IGQGSFSDGMPLGISGTFNFMIVFQAEHNIL+HPFH
Subjt:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFH

A0A3B6IS79 Uncharacterized protein

3.4e-30

90.28

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Query:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFH
        MGREW+LSFRLG+RPWIVV YSAPVAAAT+VFLIY IGQGSFSDGMPLGISGTFN+MIVFQAEHNIL+HPFH
Subjt:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFH

A0A5K1I0G6 Uncharacterized protein

2.2e-34

79.79

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Query:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFHR--CSWCIRGISIQSYAWFLGH
        MGREW+LSFRLG RPWI V YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVFQAEHNIL+HPFH    +   R +SIQ YAWFLG+
Subjt:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFHR--CSWCIRGISIQSYAWFLGH

F1KC07 Photosystem II protein D1

4.4e-30

91.67

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Query:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFH
        MGREW+LSFRLG RPWIVV YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVFQAEHNIL+HPFH
Subjt:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFH

SwissProt top hits

e value

%identity

Alignment

A1E9Y8 Photosystem II protein D1

3.4e-32

90.28

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Query:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFH
        MGREW+LSFRLG RPWI V YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVFQAEHNIL+HPFH
Subjt:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFH

A4QJ96 Photosystem II protein D1

3.4e-32

90.28

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Query:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFH
        MGREW+LSFRLG RPWI V YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVFQAEHNIL+HPFH
Subjt:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFH

A4QJI0 Photosystem II protein D1

3.4e-32

90.28

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Query:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFH
        MGREW+LSFRLG RPWI V YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVFQAEHNIL+HPFH
Subjt:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFH

P13910 Photosystem II protein D1

1.2e-32

91.67

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Query:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFH
        MGREW+LSFRLG RPWIVV YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVFQAEHNIL+HPFH
Subjt:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFH

Q3V554 Photosystem II protein D1

3.4e-32

90.28

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Query:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFH
        MGREW+LSFRLG RPWI V YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVFQAEHNIL+HPFH
Subjt:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFH

Arabidopsis top hits

e value

%identity

Alignment

ATCG00020.1 photosystem II reaction center protein A

2.5e-33

90.28

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Query:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFH
        MGREW+LSFRLG RPWI V YSAPVAAAT VFLIY IGQGSFSDGMPLGISGTFNFMIVFQAEHNIL+HPFH
Subjt:  MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFH

Sequences

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CDS sequence

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ATGGGTCGAGAGTGGAAACTGAGTTTCCGTCTGGGTAAGCGTCCTTGGATTGTTGTTACATATTCAGCTCCTGTTGCAGCTGCTACTGTTGTTTTCTTGATCTAC
CTAATTGGTCAAGGAAGCTTTTCTGACGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGCACAACATCCTTATACACCCA
TTCCATAGGTGTAGCTGGTGTATTCGGGGGATCTCTATTCAGTCCTATGCATGGTTCCTTGGTCACTTCTAG

mRNA sequence

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Protein sequence

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MGREWKLSFRLGKRPWIVVTYSAPVAAATVVFLIYLIGQGSFSDGMPLGISGTFNFMIVFQAEHNILIHPFHRCSWCIRGISIQSYAWFLGHF

Cmc07g0186631 (gene) of Melon (Charmono) v1.1 genome