; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc07g0187831 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc07g0187831
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr07:5898877..5899599
RNA-Seq ExpressionCmc07g0187831
SyntenyCmc07g0187831
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR025724 - GAG-pre-integrase domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]9.3e-10384.55Show/hide
Query:  MNNHPQMSAMVASPNLNIDNNWYLDSGATNHLTHSLSNLSTRFEYVGGNQIYAANGSCLPIIHHGSMSFNSSTLPFKSFTLNNLLHVPSITKNLISVSQF
        MNNHPQMSAMVA+ +LNID+NWY DSGATNHLTHSLSNLS   EY GGNQIYAANGS LPI H+GSMSFNSSTLPFKSFTLNNLL VPSITKNLISVSQF
Subjt:  MNNHPQMSAMVASPNLNIDNNWYLDSGATNHLTHSLSNLSTRFEYVGGNQIYAANGSCLPIIHHGSMSFNSSTLPFKSFTLNNLLHVPSITKNLISVSQF

Query:  AKDNHVFFEFHPTLCYMKNMDTDQVFLQGLLNDSLYKFTIQPSHKRLHHSKSNTKFVFNTVVPKSNIPLLDLWHKRLGHPHLPTIKVVLKHIDYSSGTID
        AKDNHVFFEFHPTLCY+K++DT QV LQGLLND LYKFTI+PSHKRLHHS SNTK VFNTVVPKSN PLLDLWH+RLGHPHLP +K VL HID SSGTI+
Subjt:  AKDNHVFFEFHPTLCYMKNMDTDQVFLQGLLNDSLYKFTIQPSHKRLHHSKSNTKFVFNTVVPKSNIPLLDLWHKRLGHPHLPTIKVVLKHIDYSSGTID

Query:  KMIFCEAYALGNHHALPFSH
        K+ FCEA ALG HHALPFSH
Subjt:  KMIFCEAYALGNHHALPFSH
KAA0067212.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa]1.7e-6767.96Show/hide
Query:  QMSAMVASPNLNIDNNWYLDSGATNHLTHSLSNLSTRFEYVGGNQIYAANGSCLPIIHHGSMSFNSSTLPFKSFTLNNLLHVPSITKNLISVSQFAKDNH
        QMSAMVA+P+LNID+NWY DSGATNHLTHSLSNLST  EY GGNQIYAANGS LPI H+GSMSFNSSTLPFKSFTLNNLLH                   
Subjt:  QMSAMVASPNLNIDNNWYLDSGATNHLTHSLSNLSTRFEYVGGNQIYAANGSCLPIIHHGSMSFNSSTLPFKSFTLNNLLHVPSITKNLISVSQFAKDNH

Query:  VFFEFHPTLCYMKNMDTDQVFLQGLLNDSLYKFTIQPSHKRLHHSKSNTKFVFNTVVPKSNIPLLDLWHKRLGHPHLPTIKVVLKHIDYSSGTIDKMIFC
                     ++DT QV LQGLLND LYKFTIQPSHKRLHHS SNTK VFNTVVPKSN PLLDLWH+RLGHPHLPT+K VL HID+SS    K   C
Subjt:  VFFEFHPTLCYMKNMDTDQVFLQGLLNDSLYKFTIQPSHKRLHHSKSNTKFVFNTVVPKSNIPLLDLWHKRLGHPHLPTIKVVLKHIDYSSGTIDKMIFC

Query:  EAYALG
           +LG
Subjt:  EAYALG
KAA0068024.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]6.3e-8382.97Show/hide
Query:  DNNWYLDSGATNHLTHSLSNLSTRFEYVGGNQIYAANGSCLPIIHHGSMSFNSSTLPFKSFTLNNLLHVPSITKNLISVSQFAKDNHVFFEFHPTLCYMK
        D+NWY DSGATNHLTHSLSNLST  EY GGNQIY ANGS LPI H+GSMSFNSSTLPFKSFTL NLLHVPSITKNLISVS FAKDNHVFFEFHPTLCY+K
Subjt:  DNNWYLDSGATNHLTHSLSNLSTRFEYVGGNQIYAANGSCLPIIHHGSMSFNSSTLPFKSFTLNNLLHVPSITKNLISVSQFAKDNHVFFEFHPTLCYMK

Query:  NMDTDQVFLQGLLNDSLYKFTIQPSHKRLHHSKSNTKFVFNTVVPKSNIPLLDLWHKRLGHPHLPTIKVVLKHIDYSSGTID
        ++D  QV LQGLLND LYKFTIQPSHKRLH+S  NTK VFNTVVPKSN PL+DLWH+RLGHPHLPT+K VLKH+D+SSGT +
Subjt:  NMDTDQVFLQGLLNDSLYKFTIQPSHKRLHHSKSNTKFVFNTVVPKSNIPLLDLWHKRLGHPHLPTIKVVLKHIDYSSGTID
RVW80632.1 Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]5.5e-3943.41Show/hide
Query:  DNNWYLDSGATNHLTHSLSNLSTRFEYVGGNQIYAANGSCLPIIHHGSMSFNSSTLPFKSFTLNNLLHVPSITKNLISVSQFAKDNHVFFEFHPTLCYMK
        DNNWY DSGAT+HLT +L+NL T+ ++   ++++  NG  LPI H G  SF+SS +P K+  L  LLHVP ITKNL+SVS+FA DNHVFFEFHPT C++K
Subjt:  DNNWYLDSGATNHLTHSLSNLSTRFEYVGGNQIYAANGSCLPIIHHGSMSFNSSTLPFKSFTLNNLLHVPSITKNLISVSQFAKDNHVFFEFHPTLCYMK

Query:  NMDTDQVFLQGLLNDSLYKFTIQPSHKRLHHSKSNTKFVF---NTVVPKSNIPLLDLWHKRLGHPHLPTIKVVLKHIDYSSGTIDKMIFCEAYALGNHHA
        ++ T  V + G L   LY F        LH+S              VP S+     LWH RLGHP    + +VL   +         + C A  +G  H 
Subjt:  NMDTDQVFLQGLLNDSLYKFTIQPSHKRLHHSKSNTKFVF---NTVVPKSNIPLLDLWHKRLGHPHLPTIKVVLKHIDYSSGTIDKMIFCEAYALGNHHA

Query:  LPFSH
         PF H
Subjt:  LPFSH
TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]9.3e-10384.55Show/hide
Query:  MNNHPQMSAMVASPNLNIDNNWYLDSGATNHLTHSLSNLSTRFEYVGGNQIYAANGSCLPIIHHGSMSFNSSTLPFKSFTLNNLLHVPSITKNLISVSQF
        MNNHPQMSAMVA+ +LNID+NWY DSGATNHLTHSLSNLS   EY GGNQIYAANGS LPI H+GSMSFNSSTLPFKSFTLNNLL VPSITKNLISVSQF
Subjt:  MNNHPQMSAMVASPNLNIDNNWYLDSGATNHLTHSLSNLSTRFEYVGGNQIYAANGSCLPIIHHGSMSFNSSTLPFKSFTLNNLLHVPSITKNLISVSQF

Query:  AKDNHVFFEFHPTLCYMKNMDTDQVFLQGLLNDSLYKFTIQPSHKRLHHSKSNTKFVFNTVVPKSNIPLLDLWHKRLGHPHLPTIKVVLKHIDYSSGTID
        AKDNHVFFEFHPTLCY+K++DT QV LQGLLND LYKFTI+PSHKRLHHS SNTK VFNTVVPKSN PLLDLWH+RLGHPHLP +K VL HID SSGTI+
Subjt:  AKDNHVFFEFHPTLCYMKNMDTDQVFLQGLLNDSLYKFTIQPSHKRLHHSKSNTKFVFNTVVPKSNIPLLDLWHKRLGHPHLPTIKVVLKHIDYSSGTID

Query:  KMIFCEAYALGNHHALPFSH
        K+ FCEA ALG HHALPFSH
Subjt:  KMIFCEAYALGNHHALPFSH
TrEMBL top hitse value%identityAlignment
A0A438H844 Retrovirus-related Pol polyprotein from transposon RE12.7e-3943.41Show/hide
Query:  DNNWYLDSGATNHLTHSLSNLSTRFEYVGGNQIYAANGSCLPIIHHGSMSFNSSTLPFKSFTLNNLLHVPSITKNLISVSQFAKDNHVFFEFHPTLCYMK
        DNNWY DSGAT+HLT +L+NL T+ ++   ++++  NG  LPI H G  SF+SS +P K+  L  LLHVP ITKNL+SVS+FA DNHVFFEFHPT C++K
Subjt:  DNNWYLDSGATNHLTHSLSNLSTRFEYVGGNQIYAANGSCLPIIHHGSMSFNSSTLPFKSFTLNNLLHVPSITKNLISVSQFAKDNHVFFEFHPTLCYMK

Query:  NMDTDQVFLQGLLNDSLYKFTIQPSHKRLHHSKSNTKFVF---NTVVPKSNIPLLDLWHKRLGHPHLPTIKVVLKHIDYSSGTIDKMIFCEAYALGNHHA
        ++ T  V + G L   LY F        LH+S              VP S+     LWH RLGHP    + +VL   +         + C A  +G  H 
Subjt:  NMDTDQVFLQGLLNDSLYKFTIQPSHKRLHHSKSNTKFVF---NTVVPKSNIPLLDLWHKRLGHPHLPTIKVVLKHIDYSSGTIDKMIFCEAYALGNHHA

Query:  LPFSH
         PF H
Subjt:  LPFSH
A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-944.5e-10384.55Show/hide
Query:  MNNHPQMSAMVASPNLNIDNNWYLDSGATNHLTHSLSNLSTRFEYVGGNQIYAANGSCLPIIHHGSMSFNSSTLPFKSFTLNNLLHVPSITKNLISVSQF
        MNNHPQMSAMVA+ +LNID+NWY DSGATNHLTHSLSNLS   EY GGNQIYAANGS LPI H+GSMSFNSSTLPFKSFTLNNLL VPSITKNLISVSQF
Subjt:  MNNHPQMSAMVASPNLNIDNNWYLDSGATNHLTHSLSNLSTRFEYVGGNQIYAANGSCLPIIHHGSMSFNSSTLPFKSFTLNNLLHVPSITKNLISVSQF

Query:  AKDNHVFFEFHPTLCYMKNMDTDQVFLQGLLNDSLYKFTIQPSHKRLHHSKSNTKFVFNTVVPKSNIPLLDLWHKRLGHPHLPTIKVVLKHIDYSSGTID
        AKDNHVFFEFHPTLCY+K++DT QV LQGLLND LYKFTI+PSHKRLHHS SNTK VFNTVVPKSN PLLDLWH+RLGHPHLP +K VL HID SSGTI+
Subjt:  AKDNHVFFEFHPTLCYMKNMDTDQVFLQGLLNDSLYKFTIQPSHKRLHHSKSNTKFVFNTVVPKSNIPLLDLWHKRLGHPHLPTIKVVLKHIDYSSGTID

Query:  KMIFCEAYALGNHHALPFSH
        K+ FCEA ALG HHALPFSH
Subjt:  KMIFCEAYALGNHHALPFSH
A0A5A7VFQ6 Retrotransposon protein, putative, Ty1-copia subclass8.0e-6867.96Show/hide
Query:  QMSAMVASPNLNIDNNWYLDSGATNHLTHSLSNLSTRFEYVGGNQIYAANGSCLPIIHHGSMSFNSSTLPFKSFTLNNLLHVPSITKNLISVSQFAKDNH
        QMSAMVA+P+LNID+NWY DSGATNHLTHSLSNLST  EY GGNQIYAANGS LPI H+GSMSFNSSTLPFKSFTLNNLLH                   
Subjt:  QMSAMVASPNLNIDNNWYLDSGATNHLTHSLSNLSTRFEYVGGNQIYAANGSCLPIIHHGSMSFNSSTLPFKSFTLNNLLHVPSITKNLISVSQFAKDNH

Query:  VFFEFHPTLCYMKNMDTDQVFLQGLLNDSLYKFTIQPSHKRLHHSKSNTKFVFNTVVPKSNIPLLDLWHKRLGHPHLPTIKVVLKHIDYSSGTIDKMIFC
                     ++DT QV LQGLLND LYKFTIQPSHKRLHHS SNTK VFNTVVPKSN PLLDLWH+RLGHPHLPT+K VL HID+SS    K   C
Subjt:  VFFEFHPTLCYMKNMDTDQVFLQGLLNDSLYKFTIQPSHKRLHHSKSNTKFVFNTVVPKSNIPLLDLWHKRLGHPHLPTIKVVLKHIDYSSGTIDKMIFC

Query:  EAYALG
           +LG
Subjt:  EAYALG
A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-944.5e-10384.55Show/hide
Query:  MNNHPQMSAMVASPNLNIDNNWYLDSGATNHLTHSLSNLSTRFEYVGGNQIYAANGSCLPIIHHGSMSFNSSTLPFKSFTLNNLLHVPSITKNLISVSQF
        MNNHPQMSAMVA+ +LNID+NWY DSGATNHLTHSLSNLS   EY GGNQIYAANGS LPI H+GSMSFNSSTLPFKSFTLNNLL VPSITKNLISVSQF
Subjt:  MNNHPQMSAMVASPNLNIDNNWYLDSGATNHLTHSLSNLSTRFEYVGGNQIYAANGSCLPIIHHGSMSFNSSTLPFKSFTLNNLLHVPSITKNLISVSQF

Query:  AKDNHVFFEFHPTLCYMKNMDTDQVFLQGLLNDSLYKFTIQPSHKRLHHSKSNTKFVFNTVVPKSNIPLLDLWHKRLGHPHLPTIKVVLKHIDYSSGTID
        AKDNHVFFEFHPTLCY+K++DT QV LQGLLND LYKFTI+PSHKRLHHS SNTK VFNTVVPKSN PLLDLWH+RLGHPHLP +K VL HID SSGTI+
Subjt:  AKDNHVFFEFHPTLCYMKNMDTDQVFLQGLLNDSLYKFTIQPSHKRLHHSKSNTKFVFNTVVPKSNIPLLDLWHKRLGHPHLPTIKVVLKHIDYSSGTID

Query:  KMIFCEAYALGNHHALPFSH
        K+ FCEA ALG HHALPFSH
Subjt:  KMIFCEAYALGNHHALPFSH
A0A5D3D3G2 Retrovirus-related Pol polyprotein from transposon TNT 1-943.0e-8382.97Show/hide
Query:  DNNWYLDSGATNHLTHSLSNLSTRFEYVGGNQIYAANGSCLPIIHHGSMSFNSSTLPFKSFTLNNLLHVPSITKNLISVSQFAKDNHVFFEFHPTLCYMK
        D+NWY DSGATNHLTHSLSNLST  EY GGNQIY ANGS LPI H+GSMSFNSSTLPFKSFTL NLLHVPSITKNLISVS FAKDNHVFFEFHPTLCY+K
Subjt:  DNNWYLDSGATNHLTHSLSNLSTRFEYVGGNQIYAANGSCLPIIHHGSMSFNSSTLPFKSFTLNNLLHVPSITKNLISVSQFAKDNHVFFEFHPTLCYMK

Query:  NMDTDQVFLQGLLNDSLYKFTIQPSHKRLHHSKSNTKFVFNTVVPKSNIPLLDLWHKRLGHPHLPTIKVVLKHIDYSSGTID
        ++D  QV LQGLLND LYKFTIQPSHKRLH+S  NTK VFNTVVPKSN PL+DLWH+RLGHPHLPT+K VLKH+D+SSGT +
Subjt:  NMDTDQVFLQGLLNDSLYKFTIQPSHKRLHHSKSNTKFVFNTVVPKSNIPLLDLWHKRLGHPHLPTIKVVLKHIDYSSGTID
SwissProt top hitse value%identityAlignment
Q94HW2 Retrovirus-related Pol polyprotein from transposon RE13.6e-2532.88Show/hide
Query:  PQMSAMVASPNLNIDNNWYLDSGATNHLTHSLSNLSTRFEYVGGNQIYAANGSCLPIIHHGSMSFNSSTLPFKSFTLNNLLHVPSITKNLISVSQFAKDN
        P+ +  + SP  +  NNW LDSGAT+H+T   +NLS    Y GG+ +  A+GS +PI H GS S ++ + P     L+N+L+VP+I KNLISV +    N
Subjt:  PQMSAMVASPNLNIDNNWYLDSGATNHLTHSLSNLSTRFEYVGGNQIYAANGSCLPIIHHGSMSFNSSTLPFKSFTLNNLLHVPSITKNLISVSQFAKDN

Query:  HVFFEFHPTLCYMKNMDTDQVFLQGLLNDSLYKFTIQPSHKRLHHSKSNTKFVFNTVVPKSNIPLLDLWHKRLGHPHLPTIKVVLKHIDYSSGTID---K
         V  EF P    +K+++T    LQG   D LY++ I  S      +  ++K   ++            WH RLGHP    +  V+   +YS   ++   K
Subjt:  HVFFEFHPTLCYMKNMDTDQVFLQGLLNDSLYKFTIQPSHKRLHHSKSNTKFVFNTVVPKSNIPLLDLWHKRLGHPHLPTIKVVLKHIDYSSGTID---K

Query:  MIFCEAYALGNHHALPFSHPSL
         + C    +   + +PFS  ++
Subjt:  MIFCEAYALGNHHALPFSHPSL
Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE23.3e-2635.12Show/hide
Query:  NNWYLDSGATNHLTHSLSNLSTRFEYVGGNQIYAANGSCLPIIHHGSMSFNSSTLPFKSFTLNNLLHVPSITKNLISVSQFAKDNHVFFEFHPTLCYMKN
        NNW LDSGAT+H+T   +NLS    Y GG+ +  A+GS +PI H GS S  +S+   +S  LN +L+VP+I KNLISV +    N V  EF P    +K+
Subjt:  NNWYLDSGATNHLTHSLSNLSTRFEYVGGNQIYAANGSCLPIIHHGSMSFNSSTLPFKSFTLNNLLHVPSITKNLISVSQFAKDNHVFFEFHPTLCYMKN

Query:  MDTDQVFLQGLLNDSLYKFTIQPSHKRLHHSKSNTKFVFNTVVPKSNIPLLDLWHKRLGHPHLPTI-KVVLKHIDYSSGTIDKMIFCEAYALGNHHALPF
        ++T    LQG   D LY++ I  S      +   +K   ++            WH RLGHP L  +  V+  H         K++ C    +   H +PF
Subjt:  MDTDQVFLQGLLNDSLYKFTIQPSHKRLHHSKSNTKFVFNTVVPKSNIPLLDLWHKRLGHPHLPTI-KVVLKHIDYSSGTIDKMIFCEAYALGNHHALPF

Query:  SHPSL
        S+ ++
Subjt:  SHPSL
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAATAATCATCCACAGATGTCTGCTATGGTGGCTTCCCCCAACCTGAATATTGACAATAATTGGTATCTTGATTCGGGAGCTACAAACCATTTAACTCATAGTTTGAG
CAACCTATCTACTAGATTTGAGTATGTGGGAGGAAATCAAATATATGCAGCAAATGGGTCATGTTTGCCAATCATTCATCATGGTTCCATGTCATTTAACTCCTCTACAT
TACCATTCAAATCATTTACACTAAATAACTTGCTCCATGTTCCATCCATTACCAAAAACTTAATCAGTGTTTCACAATTTGCCAAAGATAATCATGTTTTCTTTGAATTT
CACCCTACTTTGTGTTATATGAAGAATATGGATACTGACCAAGTATTTCTTCAAGGACTACTCAATGATAGCCTCTACAAATTTACCATCCAACCATCACATAAAAGACT
TCACCATTCTAAATCCAACACCAAGTTTGTTTTCAATACAGTTGTACCTAAATCTAATATTCCCTTACTTGATCTATGGCATAAAAGACTAGGTCATCCCCATTTACCTA
CTATTAAAGTTGTTTTGAAACACATTGACTATTCTTCTGGCACTATAGATAAAATGATTTTTTGTGAAGCATATGCATTGGGCAACCACCATGCCCTTCCTTTCTCTCAC
CCCTCACTCATTATACACATCATTTACAACTTATTACTTGTGATTTATGGGGTCCTGCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAATAATCATCCACAGATGTCTGCTATGGTGGCTTCCCCCAACCTGAATATTGACAATAATTGGTATCTTGATTCGGGAGCTACAAACCATTTAACTCATAGTTTGAG
CAACCTATCTACTAGATTTGAGTATGTGGGAGGAAATCAAATATATGCAGCAAATGGGTCATGTTTGCCAATCATTCATCATGGTTCCATGTCATTTAACTCCTCTACAT
TACCATTCAAATCATTTACACTAAATAACTTGCTCCATGTTCCATCCATTACCAAAAACTTAATCAGTGTTTCACAATTTGCCAAAGATAATCATGTTTTCTTTGAATTT
CACCCTACTTTGTGTTATATGAAGAATATGGATACTGACCAAGTATTTCTTCAAGGACTACTCAATGATAGCCTCTACAAATTTACCATCCAACCATCACATAAAAGACT
TCACCATTCTAAATCCAACACCAAGTTTGTTTTCAATACAGTTGTACCTAAATCTAATATTCCCTTACTTGATCTATGGCATAAAAGACTAGGTCATCCCCATTTACCTA
CTATTAAAGTTGTTTTGAAACACATTGACTATTCTTCTGGCACTATAGATAAAATGATTTTTTGTGAAGCATATGCATTGGGCAACCACCATGCCCTTCCTTTCTCTCAC
CCCTCACTCATTATACACATCATTTACAACTTATTACTTGTGATTTATGGGGTCCTGCAGTAA
Protein sequenceShow/hide protein sequence
MNNHPQMSAMVASPNLNIDNNWYLDSGATNHLTHSLSNLSTRFEYVGGNQIYAANGSCLPIIHHGSMSFNSSTLPFKSFTLNNLLHVPSITKNLISVSQFAKDNHVFFEF
HPTLCYMKNMDTDQVFLQGLLNDSLYKFTIQPSHKRLHHSKSNTKFVFNTVVPKSNIPLLDLWHKRLGHPHLPTIKVVLKHIDYSSGTIDKMIFCEAYALGNHHALPFSH
PSLIIHIIYNLLLVIYGVLQ