| GenBank top hits | e value | %identity | Alignment |
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| KAA0042230.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 4.8e-80 | 83.8 | Show/hide |
Query: MNANASSSVYMIEPVNLWHGRLGHVNFASVRKLKGLRLINTSESHETGKYLACVESKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFV
MNANASSS Y+IE VNLWHGRLGHVNF S RKLK LRLINT++SHET K CVESKF+KKPFKPVESR DLLELIH DLADF+ T +GGKNYYVSFV
Subjt: MNANASSSVYMIEPVNLWHGRLGHVNFASVRKLKGLRLINTSESHETGKYLACVESKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFV
Query: DDFSRFTKIYLIKIKDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
DD+SRFTKIYLIK KDEAGSMFL+FKA+SENQLGKKIK LR DRGGEYSDKTLKDF ESNGI+HEFTAPYSPQQNGIAE
Subjt: DDFSRFTKIYLIKIKDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
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| KAA0045258.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 3.7e-80 | 84.36 | Show/hide |
Query: MNANASSSVYMIEPVNLWHGRLGHVNFASVRKLKGLRLINTSESHETGKYLACVESKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFV
MNANASS Y+IE VNLWHGRLGHVNFAS+RKLK LRLINTSESHETGK CVESKF+KKPFK V+SR IDLLELIH DLADF+ T + GKNYYVSFV
Subjt: MNANASSSVYMIEPVNLWHGRLGHVNFASVRKLKGLRLINTSESHETGKYLACVESKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFV
Query: DDFSRFTKIYLIKIKDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
DD+SRFTKIYLIK KDEAGSMFL+F A+SENQLGKKIK LRLDRGGEYSDKTLKDF ESNGI+HEFTAPYSPQQNGIAE
Subjt: DDFSRFTKIYLIKIKDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
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| KAA0053084.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 4.4e-81 | 84.92 | Show/hide |
Query: MNANASSSVYMIEPVNLWHGRLGHVNFASVRKLKGLRLINTSESHETGKYLACVESKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFV
MN NASSS Y+IE VNLWHGRLGHVNFAS+RKLK LRLINTS+SHETGK CVESKF+KKPFKPVESR DLLELIH DLADFK T +GGKNYYVSFV
Subjt: MNANASSSVYMIEPVNLWHGRLGHVNFASVRKLKGLRLINTSESHETGKYLACVESKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFV
Query: DDFSRFTKIYLIKIKDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
DD+SRFTKIYLIKIKDEAGSMFL+FKA+SENQLGKKIK LR DRGGEYSDKTLKDF ESNG+ HEFTAPY PQQNGIAE
Subjt: DDFSRFTKIYLIKIKDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
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| TYK11299.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 4.5e-78 | 80.45 | Show/hide |
Query: MNANASSSVYMIEPVNLWHGRLGHVNFASVRKLKGLRLINTSESHETGKYLACVESKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFV
MNANASSS Y+IE NLWHGRLGHVNFAS+RKLK +RLINTSE+HETGK C+ESKF+KKPFKPVE R +LLELIH DLADF+ TA +GGKNYYVSFV
Subjt: MNANASSSVYMIEPVNLWHGRLGHVNFASVRKLKGLRLINTSESHETGKYLACVESKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFV
Query: DDFSRFTKIYLIKIKDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
DD+SRFTKIYLIK K+EA SMF++FKA+SENQLGK+IK LR DRGGEYSDKTLK+F ESNGI+HEFTAPYSPQQNGIAE
Subjt: DDFSRFTKIYLIKIKDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
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| TYK29957.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | 4.4e-81 | 84.92 | Show/hide |
Query: MNANASSSVYMIEPVNLWHGRLGHVNFASVRKLKGLRLINTSESHETGKYLACVESKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFV
MN NASSS Y+IE VNLWHGRLGHVNFAS+RKLK LRLINTS+SHETGK CVESKF+KKPFKPVESR DLLELIH DLADFK T +GGKNYYVSFV
Subjt: MNANASSSVYMIEPVNLWHGRLGHVNFASVRKLKGLRLINTSESHETGKYLACVESKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFV
Query: DDFSRFTKIYLIKIKDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
DD+SRFTKIYLIKIKDEAGSMFL+FKA+SENQLGKKIK LR DRGGEYSDKTLKDF ESNG+ HEFTAPY PQQNGIAE
Subjt: DDFSRFTKIYLIKIKDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7TFW9 Ty1-copia retrotransposon protein | 2.3e-80 | 83.8 | Show/hide |
Query: MNANASSSVYMIEPVNLWHGRLGHVNFASVRKLKGLRLINTSESHETGKYLACVESKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFV
MNANASSS Y+IE VNLWHGRLGHVNF S RKLK LRLINT++SHET K CVESKF+KKPFKPVESR DLLELIH DLADF+ T +GGKNYYVSFV
Subjt: MNANASSSVYMIEPVNLWHGRLGHVNFASVRKLKGLRLINTSESHETGKYLACVESKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFV
Query: DDFSRFTKIYLIKIKDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
DD+SRFTKIYLIK KDEAGSMFL+FKA+SENQLGKKIK LR DRGGEYSDKTLKDF ESNGI+HEFTAPYSPQQNGIAE
Subjt: DDFSRFTKIYLIKIKDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
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| A0A5A7TQW7 Ty1-copia retrotransposon protein | 1.8e-80 | 84.36 | Show/hide |
Query: MNANASSSVYMIEPVNLWHGRLGHVNFASVRKLKGLRLINTSESHETGKYLACVESKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFV
MNANASS Y+IE VNLWHGRLGHVNFAS+RKLK LRLINTSESHETGK CVESKF+KKPFK V+SR IDLLELIH DLADF+ T + GKNYYVSFV
Subjt: MNANASSSVYMIEPVNLWHGRLGHVNFASVRKLKGLRLINTSESHETGKYLACVESKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFV
Query: DDFSRFTKIYLIKIKDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
DD+SRFTKIYLIK KDEAGSMFL+F A+SENQLGKKIK LRLDRGGEYSDKTLKDF ESNGI+HEFTAPYSPQQNGIAE
Subjt: DDFSRFTKIYLIKIKDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
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| A0A5A7UCV4 Ty1-copia retrotransposon protein | 2.1e-81 | 84.92 | Show/hide |
Query: MNANASSSVYMIEPVNLWHGRLGHVNFASVRKLKGLRLINTSESHETGKYLACVESKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFV
MN NASSS Y+IE VNLWHGRLGHVNFAS+RKLK LRLINTS+SHETGK CVESKF+KKPFKPVESR DLLELIH DLADFK T +GGKNYYVSFV
Subjt: MNANASSSVYMIEPVNLWHGRLGHVNFASVRKLKGLRLINTSESHETGKYLACVESKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFV
Query: DDFSRFTKIYLIKIKDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
DD+SRFTKIYLIKIKDEAGSMFL+FKA+SENQLGKKIK LR DRGGEYSDKTLKDF ESNG+ HEFTAPY PQQNGIAE
Subjt: DDFSRFTKIYLIKIKDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
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| A0A5D3CM58 Ty1-copia retrotransposon protein | 2.2e-78 | 80.45 | Show/hide |
Query: MNANASSSVYMIEPVNLWHGRLGHVNFASVRKLKGLRLINTSESHETGKYLACVESKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFV
MNANASSS Y+IE NLWHGRLGHVNFAS+RKLK +RLINTSE+HETGK C+ESKF+KKPFKPVE R +LLELIH DLADF+ TA +GGKNYYVSFV
Subjt: MNANASSSVYMIEPVNLWHGRLGHVNFASVRKLKGLRLINTSESHETGKYLACVESKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFV
Query: DDFSRFTKIYLIKIKDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
DD+SRFTKIYLIK K+EA SMF++FKA+SENQLGK+IK LR DRGGEYSDKTLK+F ESNGI+HEFTAPYSPQQNGIAE
Subjt: DDFSRFTKIYLIKIKDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
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| A0A5D3E1H3 Ty1-copia retrotransposon protein | 2.1e-81 | 84.92 | Show/hide |
Query: MNANASSSVYMIEPVNLWHGRLGHVNFASVRKLKGLRLINTSESHETGKYLACVESKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFV
MN NASSS Y+IE VNLWHGRLGHVNFAS+RKLK LRLINTS+SHETGK CVESKF+KKPFKPVESR DLLELIH DLADFK T +GGKNYYVSFV
Subjt: MNANASSSVYMIEPVNLWHGRLGHVNFASVRKLKGLRLINTSESHETGKYLACVESKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFV
Query: DDFSRFTKIYLIKIKDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
DD+SRFTKIYLIKIKDEAGSMFL+FKA+SENQLGKKIK LR DRGGEYSDKTLKDF ESNG+ HEFTAPY PQQNGIAE
Subjt: DDFSRFTKIYLIKIKDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 4.2e-18 | 31.98 | Show/hide |
Query: LWHGRLGHVNFASVRKLKGLRLI-------NTSESHETGKYLACVESKFNKKPFKPVESRN--IDLLELIHLDLADFKNTAGKGGKNYYVSFVDDFSRFT
LWH R GH++ + ++K + N S E + C+ K + PFK ++ + L ++H D+ KNY+V FVD F+ +
Subjt: LWHGRLGHVNFASVRKLKGLRLI-------NTSESHETGKYLACVESKFNKKPFKPVESRN--IDLLELIHLDLADFKNTAGKGGKNYYVSFVDDFSRFT
Query: KIYLIKIKDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
YLIK K + SMF +F AKSE K+ L +D G EY ++ F GI + T P++PQ NG++E
Subjt: KIYLIKIKDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 4.2e-26 | 34.55 | Show/hide |
Query: VNLWHGRLGHVNFASVRKLKGLRLINTSESHETGKYLACVESKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFVDDFSRFTKIYLIKI
V+LWH R+GH++ ++ L LI+ ++ C+ K ++ F+ R +++L+L++ D+ GG Y+V+F+DD SR +Y++K
Subjt: VNLWHGRLGHVNFASVRKLKGLRLINTSESHETGKYLACVESKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFVDDFSRFTKIYLIKI
Query: KDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
KD+ +F +F A E + G+K+K LR D GGEY+ + +++ S+GI HE T P +PQ NG+AE
Subjt: KDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
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| Q12491 Transposon Ty2-B Gag-Pol polyprotein | 9.0e-13 | 28.27 | Show/hide |
Query: NANASSSVYMIEPVNLWHGRLGHVNFASVRK-LKGLRLINTSESH------ETGKYLACVESKFNK----KPFKPVESRNIDLLELIHLDLADFKNTAGK
N N S SV P L H LGH NF S++K LK + ES T + C+ K K K + + + + +H D+ + K
Subjt: NANASSSVYMIEPVNLWHGRLGHVNFASVRK-LKGLRLINTSESH------ETGKYLACVESKFNK----KPFKPVESRNIDLLELIHLDLADFKNTAGK
Query: GGKNYYVSFVDDFSRFTKIYLIKIKDEAG--SMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
+Y++SF D+ +RF +Y + + E ++F A +NQ ++ ++++DRG EY++KTL F+ + GI +T + +G+AE
Subjt: GGKNYYVSFVDDFSRFTKIYLIKIKDEAG--SMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 1.3e-14 | 32.14 | Show/hide |
Query: WHGRLGHVN---FASVRKLKGLRLINTSESHETGKYLACVE---SKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFVDDFSRFTKIYL
WH RLGH SV L ++N S K+L+C + +K NK PF + LE I+ D+ YYV FVD F+R+T +Y
Subjt: WHGRLGHVN---FASVRKLKGLRLINTSESHETGKYLACVE---SKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFVDDFSRFTKIYL
Query: IKIKDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
+K K + F+ FK EN+ +I D GGE+ L +++ +GI H + P++P+ NG++E
Subjt: IKIKDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.1e-15 | 33.33 | Show/hide |
Query: WHGRLGHVNFA---SVRKLKGLRLINTSESHETGKYLACVESKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFVDDFSRFTKIYLIKI
WH RLGH + A SV L ++N SH+ C +K +K PF + LE I+ D+ YYV FVD F+R+T +Y +K
Subjt: WHGRLGHVNFA---SVRKLKGLRLINTSESHETGKYLACVESKFNKKPFKPVESRNIDLLELIHLDLADFKNTAGKGGKNYYVSFVDDFSRFTKIYLIKI
Query: KDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
K + F+ FK+ EN+ +I L D GGE+ L+D+ +GI H + P++P+ NG++E
Subjt: KDEAGSMFLEFKAKSENQLGKKIKILRLDRGGEYSDKTLKDFYESNGIVHEFTAPYSPQQNGIAE
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