; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc07g0188111 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc07g0188111
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationCMiso1.1chr07:6297339..6297995
RNA-Seq ExpressionCmc07g0188111
SyntenyCmc07g0188111
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0098869 - cellular oxidant detoxification (biological process)
GO:0016020 - membrane (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0004601 - peroxidase activity (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0052305.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.0e-12198.17Show/hide
Query:  MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRVQD
        MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPF SPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELL ELNGTSVFSKIDLKSGYHQIRVQD
Subjt:  MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRVQD

Query:  EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW
        EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSED+ETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW
Subjt:  EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW

Query:  VSAKGVKANQEKIKAMLE
        VSAKGVKA+QEKIKAMLE
Subjt:  VSAKGVKANQEKIKAMLE

TYK10423.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]7.9e-10987.16Show/hide
Query:  MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRVQD
        +RPYRYPHAQKNEIE+LVN+ML SGII+PS SPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKF IPMIDELLDEL+G S+FSKIDLKSGYHQIRV+D
Subjt:  MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRVQD

Query:  EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW
        ED+ K  F+TH+GHYEFLVMPFGLTN P+TFQA MNQ+FRPYLRKFLLVFFDDILVYS DVETHLEHLT+VFQLLRQHCLFANR+KCHFAKDRIE LGHW
Subjt:  EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW

Query:  VSAKGVKANQEKIKAMLE
        VSAKGV+A+QEKIKAM+E
Subjt:  VSAKGVKANQEKIKAMLE

TYK21209.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]7.9e-10987.16Show/hide
Query:  MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRVQD
        +RPYRYPHAQKNEIE+LVN+ML SGII+PS SPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKF IPMIDELLDEL+G S+FSKIDLKSGYHQIRV+D
Subjt:  MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRVQD

Query:  EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW
        ED+ K  F+TH+GHYEFLVMPFGLTN P+TFQA MNQ+FRPYLRKFLLVFFDDILVYS DVETHLEHLT+VFQLLRQHCLFANR+KCHFAKDRIE LGHW
Subjt:  EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW

Query:  VSAKGVKANQEKIKAMLE
        VSAKGV+A+QEKIKAM+E
Subjt:  VSAKGVKANQEKIKAMLE

TYK23724.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]7.9e-10987.16Show/hide
Query:  MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRVQD
        +RPYRYPHAQKNEIE+LVN+ML SGII+PS SPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKF IPMIDELLDEL+G S+FSKIDLKSGYHQIRV+D
Subjt:  MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRVQD

Query:  EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW
        ED+ K  F+TH+GHYEFLVMPFGLTN P+TFQA MNQ+FRPYLRKFLLVFFDDILVYS DVETHLEHLT+VFQLLRQHCLFANR+KCHFAKDRIE LGHW
Subjt:  EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW

Query:  VSAKGVKANQEKIKAMLE
        VSAKGV+A+QEKIKAM+E
Subjt:  VSAKGVKANQEKIKAMLE

TYK26407.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]7.9e-10987.16Show/hide
Query:  MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRVQD
        +RPYRYPHAQKNEIE+LVN+ML SGII+PS SPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKF IPMIDELLDEL+G S+FSKIDLKSGYHQIRV+D
Subjt:  MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRVQD

Query:  EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW
        ED+ K  F+TH+GHYEFLVMPFGLTN P+TFQA MNQ+FRPYLRKFLLVFFDDILVYS DVETHLEHLT+VFQLLRQHCLFANR+KCHFAKDRIE LGHW
Subjt:  EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW

Query:  VSAKGVKANQEKIKAMLE
        VSAKGV+A+QEKIKAM+E
Subjt:  VSAKGVKANQEKIKAMLE

TrEMBL top hitse value%identityAlignment
A0A5A7T836 Ty3/gypsy retrotransposon protein3.8e-10987.16Show/hide
Query:  MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRVQD
        +RPYRYPHAQKNEIE+LVN+ML SGII+PS SPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKF IPMIDELLDEL+G S+FSKIDLKSGYHQIRV+D
Subjt:  MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRVQD

Query:  EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW
        ED+ K  F+TH+GHYEFLVMPFGLTN P+TFQA MNQ+FRPYLRKFLLVFFDDILVYS DVETHLEHLT+VFQLLRQHCLFANR+KCHFAKDRIE LGHW
Subjt:  EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW

Query:  VSAKGVKANQEKIKAMLE
        VSAKGV+A+QEKIKAM+E
Subjt:  VSAKGVKANQEKIKAMLE

A0A5A7UF04 Ty3-gypsy retrotransposon protein4.3e-12198.17Show/hide
Query:  MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRVQD
        MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPF SPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELL ELNGTSVFSKIDLKSGYHQIRVQD
Subjt:  MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRVQD

Query:  EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW
        EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSED+ETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW
Subjt:  EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW

Query:  VSAKGVKANQEKIKAMLE
        VSAKGVKA+QEKIKAMLE
Subjt:  VSAKGVKANQEKIKAMLE

A0A5D3BD16 Ty3/gypsy retrotransposon protein3.8e-10987.16Show/hide
Query:  MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRVQD
        +RPYRYPHAQKNEIE+LVN+ML SGII+PS SPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKF IPMIDELLDEL+G S+FSKIDLKSGYHQIRV+D
Subjt:  MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRVQD

Query:  EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW
        ED+ K  F+TH+GHYEFLVMPFGLTN P+TFQA MNQ+FRPYLRKFLLVFFDDILVYS DVETHLEHLT+VFQLLRQHCLFANR+KCHFAKDRIE LGHW
Subjt:  EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW

Query:  VSAKGVKANQEKIKAMLE
        VSAKGV+A+QEKIKAM+E
Subjt:  VSAKGVKANQEKIKAMLE

A0A5D3CEX8 Ty3/gypsy retrotransposon protein3.8e-10987.16Show/hide
Query:  MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRVQD
        +RPYRYPHAQKNEIE+LVN+ML SGII+PS SPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKF IPMIDELLDEL+G S+FSKIDLKSGYHQIRV+D
Subjt:  MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRVQD

Query:  EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW
        ED+ K  F+TH+GHYEFLVMPFGLTN P+TFQA MNQ+FRPYLRKFLLVFFDDILVYS DVETHLEHLT+VFQLLRQHCLFANR+KCHFAKDRIE LGHW
Subjt:  EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW

Query:  VSAKGVKANQEKIKAMLE
        VSAKGV+A+QEKIKAM+E
Subjt:  VSAKGVKANQEKIKAMLE

A0A5D3DRT3 Ty3/gypsy retrotransposon protein3.8e-10987.16Show/hide
Query:  MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRVQD
        +RPYRYPHAQKNEIE+LVN+ML SGII+PS SPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKF IPMIDELLDEL+G S+FSKIDLKSGYHQIRV+D
Subjt:  MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRVQD

Query:  EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW
        ED+ K  F+TH+GHYEFLVMPFGLTN P+TFQA MNQ+FRPYLRKFLLVFFDDILVYS DVETHLEHLT+VFQLLRQHCLFANR+KCHFAKDRIE LGHW
Subjt:  EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW

Query:  VSAKGVKANQEKIKAMLE
        VSAKGV+A+QEKIKAM+E
Subjt:  VSAKGVKANQEKIKAMLE

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.64.7e-4844.5Show/hide
Query:  YRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGG-----WRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRV
        Y YP A + E+E  + +ML+ GII+ S SP++SP+ +V KK        +R  +DYR LN  TV D+  IP +DE+L +L   + F+ IDL  G+HQI +
Subjt:  YRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGG-----WRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRV

Query:  QDEDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLG
          E V K  F T  GHYE+L MPFGL N P+TFQ  MN I RP L K  LV+ DDI+V+S  ++ HL+ L +VF+ L +  L     KC F K     LG
Subjt:  QDEDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLG

Query:  HWVSAKGVKANQEKIKAM
        H ++  G+K N EKI+A+
Subjt:  HWVSAKGVKANQEKIKAM

P20825 Retrovirus-related Pol polyprotein from transposon 2972.0e-4643.64Show/hide
Query:  RYPHAQKNEI--EKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGG-----WRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIR
        +YP AQ +EI  E  V EML+ G+I+ S SP++SP  +V KK        +R  +DYR LN  T+PD++ IP +DE+L +L     F+ IDL  G+HQI 
Subjt:  RYPHAQKNEI--EKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGG-----WRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIR

Query:  VQDEDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECL
        + +E + K  F T  GHYE+L MPFGL N P+TFQ  MN I RP L K  LV+ DDI+++S  +  HL  + +VF  L    L     KC F K     L
Subjt:  VQDEDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECL

Query:  GHWVSAKGVKANQEKIKAML
        GH V+  G+K N  K+KA++
Subjt:  GHWVSAKGVKANQEKIKAML

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein3.3e-4944.44Show/hide
Query:  MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRVQD
        ++PY      + EI K+V ++LD+  I PS SP SSPV+LV KKDG +R CVDYR LN+AT+ D F +P ID LL  +    +F+ +DL SGYHQI ++ 
Subjt:  MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRVQD

Query:  EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW
        +D  K  F T  G YE+ VMPFGL N PSTF  +M   FR    +F+ V+ DDIL++SE  E H +HL  V + L+   L   +KKC FA +  E LG+ 
Subjt:  EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW

Query:  VSAKGVKANQEKIKAM
        +  + +   Q K  A+
Subjt:  VSAKGVKANQEKIKAM

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus1.7e-4540.09Show/hide
Query:  RPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKK-----DGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQI
        + Y YP   + E+E+ ++E+L  GII+PS SP++SP+ +V KK     +  +R  VD++ LN  T+PD + IP I+  L  L     F+ +DL SG+HQI
Subjt:  RPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKK-----DGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQI

Query:  RVQDEDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIEC
         +++ D+ K  F T  G YEFL +PFGL N P+ FQ  ++ I R ++ K   V+ DDI+V+SED +TH ++L +V   L +  L  N +K HF   ++E 
Subjt:  RVQDEDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIEC

Query:  LGHWVSAKGVKANQEKIKAMLE
        LG+ V+A G+KA+ +K++A+ E
Subjt:  LGHWVSAKGVKANQEKIKAMLE

Q99315 Transposon Ty3-G Gag-Pol polyprotein3.3e-4944.44Show/hide
Query:  MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRVQD
        ++PY      + EI K+V ++LD+  I PS SP SSPV+LV KKDG +R CVDYR LN+AT+ D F +P ID LL  +    +F+ +DL SGYHQI ++ 
Subjt:  MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRVQD

Query:  EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW
        +D  K  F T  G YE+ VMPFGL N PSTF  +M   FR    +F+ V+ DDIL++SE  E H +HL  V + L+   L   +KKC FA +  E LG+ 
Subjt:  EDVRKITFQTHKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHW

Query:  VSAKGVKANQEKIKAM
        +  + +   Q K  A+
Subjt:  VSAKGVKANQEKIKAM

Arabidopsis top hitse value%identityAlignment
ATMG00850.1 DNA/RNA polymerases superfamily protein6.4e-0856.41Show/hide
Query:  QKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGW
        ++  ++  + EML++ IIQPS SP+SSPV+LV+KKDGGW
Subjt:  QKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGW

ATMG00860.1 DNA/RNA polymerases superfamily protein4.6e-0643.64Show/hide
Query:  LEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLG--HWVSAKGVKANQEKIKAML
        + HL +V Q+  QH  +ANRKKC F + +I  LG  H +S +GV A+  K++AM+
Subjt:  LEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLG--HWVSAKGVKANQEKIKAML


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGACCCTACCGCTACCCACATGCCCAGAAGAATGAAATTGAAAAACTAGTGAACGAGATGCTGGACTCTGGGATTATACAGCCGAGTTTCAGCCCCTTCTCTAGTCC
TGTAATCCTAGTCAAGAAGAAGGATGGGGGTTGGCGTTTTTGTGTTGATTACAGAGCTTTAAACAGGGCAACGGTACCCGATAAGTTTCTTATTCCTATGATCGATGAGT
TATTGGATGAACTGAATGGAACAAGTGTTTTTTCTAAGATAGATCTGAAATCCGGGTACCACCAAATCAGGGTGCAAGATGAGGACGTGAGGAAGATAACTTTTCAAACT
CACAAGGGACATTACGAGTTCCTAGTCATGCCATTTGGCCTCACCAACACACCCTCTACGTTCCAAGCATTTATGAATCAGATTTTTCGACCTTATTTACGTAAATTCTT
GCTGGTATTTTTTGACGATATTCTTGTGTACAGCGAAGACGTGGAAACTCATTTAGAGCATCTCACAGTGGTATTCCAACTATTAAGACAGCATTGTCTCTTTGCTAACC
GGAAGAAATGCCATTTTGCGAAGGATCGAATTGAATGCTTAGGCCATTGGGTGTCGGCCAAGGGAGTCAAAGCTAACCAGGAGAAGATTAAGGCCATGTTAGAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCGACCCTACCGCTACCCACATGCCCAGAAGAATGAAATTGAAAAACTAGTGAACGAGATGCTGGACTCTGGGATTATACAGCCGAGTTTCAGCCCCTTCTCTAGTCC
TGTAATCCTAGTCAAGAAGAAGGATGGGGGTTGGCGTTTTTGTGTTGATTACAGAGCTTTAAACAGGGCAACGGTACCCGATAAGTTTCTTATTCCTATGATCGATGAGT
TATTGGATGAACTGAATGGAACAAGTGTTTTTTCTAAGATAGATCTGAAATCCGGGTACCACCAAATCAGGGTGCAAGATGAGGACGTGAGGAAGATAACTTTTCAAACT
CACAAGGGACATTACGAGTTCCTAGTCATGCCATTTGGCCTCACCAACACACCCTCTACGTTCCAAGCATTTATGAATCAGATTTTTCGACCTTATTTACGTAAATTCTT
GCTGGTATTTTTTGACGATATTCTTGTGTACAGCGAAGACGTGGAAACTCATTTAGAGCATCTCACAGTGGTATTCCAACTATTAAGACAGCATTGTCTCTTTGCTAACC
GGAAGAAATGCCATTTTGCGAAGGATCGAATTGAATGCTTAGGCCATTGGGTGTCGGCCAAGGGAGTCAAAGCTAACCAGGAGAAGATTAAGGCCATGTTAGAGTAG
Protein sequenceShow/hide protein sequence
MRPYRYPHAQKNEIEKLVNEMLDSGIIQPSFSPFSSPVILVKKKDGGWRFCVDYRALNRATVPDKFLIPMIDELLDELNGTSVFSKIDLKSGYHQIRVQDEDVRKITFQT
HKGHYEFLVMPFGLTNTPSTFQAFMNQIFRPYLRKFLLVFFDDILVYSEDVETHLEHLTVVFQLLRQHCLFANRKKCHFAKDRIECLGHWVSAKGVKANQEKIKAMLE