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Cmc07g0188201 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc07g0188201
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrotransposon protein
Genome locationCMiso1.1chr07:6447891..6448541
RNA-Seq ExpressionCmc07g0188201
SyntenyCmc07g0188201
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0016787 - hydrolase activity (molecular function)
GO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR027806 - Harbinger transposase-derived nuclease domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036923.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-8290.7Show/hide
Query:  MIHESDLVCRQSTRIDRRTFAILCHLLRNVAGLSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAVFQLYEELIKRHVPNCLG
        MIHESDLVCRQSTR+DRRTFAILCHLLRNVAGLS TEIVDVEEM+AMFLHVLAHDVKNR+IQ EFVR GETVSRHFNIVLLAV +LYEEL+KR VPNCLG
Subjt:  MIHESDLVCRQSTRIDRRTFAILCHLLRNVAGLSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAVFQLYEELIKRHVPNCLG

Query:  ALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSRKNGLQVPKG
        ALD TYIKVNVPA DRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRD +S++NGLQVPKG
Subjt:  ALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSRKNGLQVPKG

KAA0051443.1 retrotransposon protein [Cucumis melo var. makuwa]3.9e-8290.7Show/hide
Query:  MIHESDLVCRQSTRIDRRTFAILCHLLRNVAGLSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAVFQLYEELIKRHVPNCLG
        MI+ESDLVCRQSTR+DRRTFAILCHLLRNVAGLS TEIVDVEEM+AMFLHVLAHDVKNR+IQ EFVR GETVSRHFNIVLLAV +LYEELIKR VPNCLG
Subjt:  MIHESDLVCRQSTRIDRRTFAILCHLLRNVAGLSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAVFQLYEELIKRHVPNCLG

Query:  ALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSRKNGLQVPKG
        ALD TYIKVNVP  DRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRD +SR+NGLQVPKG
Subjt:  ALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSRKNGLQVPKG

KAA0052287.1 retrotransposon protein [Cucumis melo var. makuwa]6.2e-8894.41Show/hide
Query:  MIHESDLVCRQSTRIDRRTFAILCHLLRNVAGLSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAVFQLYEELIKRHVP----
        MIHESDLVCRQSTRIDRRTFAILCHLLRNVA LSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAV QLYEELIKRHVP    
Subjt:  MIHESDLVCRQSTRIDRRTFAILCHLLRNVAGLSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAVFQLYEELIKRHVP----

Query:  ---NCLGALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSRKNGLQVPKG
           NCLGALD TYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSRKNGLQVPKG
Subjt:  ---NCLGALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSRKNGLQVPKG

KAA0062150.1 retrotransposon protein [Cucumis melo var. makuwa]2.5e-8190.12Show/hide
Query:  MIHESDLVCRQSTRIDRRTFAILCHLLRNVAGLSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAVFQLYEELIKRHVPNCLG
        MIHESDLVC QSTR+DRRTFAILCHLLRNVAGLS TEIVDVEEM+AMFLHVLAHDVKNR+IQ EFVR GETVSRHFNIVLLAV +LYEELIKR VPNCLG
Subjt:  MIHESDLVCRQSTRIDRRTFAILCHLLRNVAGLSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAVFQLYEELIKRHVPNCLG

Query:  ALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSRKNGLQVPKG
        ALD TYIKV+VPA DRPTFRTRKGEIAT+VLGVCDTKGDFVYVLAGWEGSAADSRILRD +SR+NGLQVPKG
Subjt:  ALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSRKNGLQVPKG

KAA0062587.1 retrotransposon protein [Cucumis melo var. makuwa]7.8e-8391.28Show/hide
Query:  MIHESDLVCRQSTRIDRRTFAILCHLLRNVAGLSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAVFQLYEELIKRHVPNCLG
        MIHESDLVCRQSTR+DRRTFAILCHLLRNVAGLS TEIVDVEEM+AMFLHVLAHDVKNR+IQ EFVR GETVSRHFNIVLLAV +LYEELIKR VPNCLG
Subjt:  MIHESDLVCRQSTRIDRRTFAILCHLLRNVAGLSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAVFQLYEELIKRHVPNCLG

Query:  ALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSRKNGLQVPKG
        ALD TYIKVNVPA DRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS+ILRD +SR+NGLQVPKG
Subjt:  ALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSRKNGLQVPKG

TrEMBL top hitse value%identityAlignment
A0A5A7T1V5 Retrotransposon protein8.4e-8390.7Show/hide
Query:  MIHESDLVCRQSTRIDRRTFAILCHLLRNVAGLSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAVFQLYEELIKRHVPNCLG
        MIHESDLVCRQSTR+DRRTFAILCHLLRNVAGLS TEIVDVEEM+AMFLHVLAHDVKNR+IQ EFVR GETVSRHFNIVLLAV +LYEEL+KR VPNCLG
Subjt:  MIHESDLVCRQSTRIDRRTFAILCHLLRNVAGLSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAVFQLYEELIKRHVPNCLG

Query:  ALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSRKNGLQVPKG
        ALD TYIKVNVPA DRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRD +S++NGLQVPKG
Subjt:  ALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSRKNGLQVPKG

A0A5A7U6C1 Retrotransposon protein1.9e-8290.7Show/hide
Query:  MIHESDLVCRQSTRIDRRTFAILCHLLRNVAGLSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAVFQLYEELIKRHVPNCLG
        MI+ESDLVCRQSTR+DRRTFAILCHLLRNVAGLS TEIVDVEEM+AMFLHVLAHDVKNR+IQ EFVR GETVSRHFNIVLLAV +LYEELIKR VPNCLG
Subjt:  MIHESDLVCRQSTRIDRRTFAILCHLLRNVAGLSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAVFQLYEELIKRHVPNCLG

Query:  ALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSRKNGLQVPKG
        ALD TYIKVNVP  DRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRD +SR+NGLQVPKG
Subjt:  ALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSRKNGLQVPKG

A0A5A7UCT7 Retrotransposon protein3.0e-8894.41Show/hide
Query:  MIHESDLVCRQSTRIDRRTFAILCHLLRNVAGLSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAVFQLYEELIKRHVP----
        MIHESDLVCRQSTRIDRRTFAILCHLLRNVA LSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAV QLYEELIKRHVP    
Subjt:  MIHESDLVCRQSTRIDRRTFAILCHLLRNVAGLSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAVFQLYEELIKRHVP----

Query:  ---NCLGALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSRKNGLQVPKG
           NCLGALD TYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSRKNGLQVPKG
Subjt:  ---NCLGALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSRKNGLQVPKG

A0A5A7V4C6 Retrotransposon protein1.2e-8190.12Show/hide
Query:  MIHESDLVCRQSTRIDRRTFAILCHLLRNVAGLSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAVFQLYEELIKRHVPNCLG
        MIHESDLVC QSTR+DRRTFAILCHLLRNVAGLS TEIVDVEEM+AMFLHVLAHDVKNR+IQ EFVR GETVSRHFNIVLLAV +LYEELIKR VPNCLG
Subjt:  MIHESDLVCRQSTRIDRRTFAILCHLLRNVAGLSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAVFQLYEELIKRHVPNCLG

Query:  ALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSRKNGLQVPKG
        ALD TYIKV+VPA DRPTFRTRKGEIAT+VLGVCDTKGDFVYVLAGWEGSAADSRILRD +SR+NGLQVPKG
Subjt:  ALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSRKNGLQVPKG

A0A5A7V6J9 Retrotransposon protein3.8e-8391.28Show/hide
Query:  MIHESDLVCRQSTRIDRRTFAILCHLLRNVAGLSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAVFQLYEELIKRHVPNCLG
        MIHESDLVCRQSTR+DRRTFAILCHLLRNVAGLS TEIVDVEEM+AMFLHVLAHDVKNR+IQ EFVR GETVSRHFNIVLLAV +LYEELIKR VPNCLG
Subjt:  MIHESDLVCRQSTRIDRRTFAILCHLLRNVAGLSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAVFQLYEELIKRHVPNCLG

Query:  ALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSRKNGLQVPKG
        ALD TYIKVNVPA DRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADS+ILRD +SR+NGLQVPKG
Subjt:  ALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSRKNGLQVPKG

SwissProt top hitse value%identityAlignment
Q9M2U3 Protein ALP1-like4.4e-0435.82Show/hide
Query:  VPNCLGALDETYIKVNVPAEDRPTFRTRKGE--IATNVLGVCDTKGDFVYVLAGWEGSAADSRILRD
        +PNC GA+D T+I +N+PA +        GE   +  +  V D    F+ V+AGW GS  D  +L++
Subjt:  VPNCLGALDETYIKVNVPAEDRPTFRTRKGE--IATNVLGVCDTKGDFVYVLAGWEGSAADSRILRD

Arabidopsis top hitse value%identityAlignment
AT1G43722.1 unknown protein2.6e-1227.53Show/hide
Query:  IHESDLVCRQSTRIDRRTFAILCHLLRNVAGLSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAV-------------FQLYE
        + +    C Q  R+    F  LC++L+    L  T  + +EE +AMFL +  H+   R +   F R  ETV R F  VL A               +LY 
Subjt:  IHESDLVCRQSTRIDRRTFAILCHLLRNVAGLSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAV-------------FQLYE

Query:  -----ELIKRHVP---NCLGALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILR
             ++ +R+ P     +GA+D T++ V V  + +  +  R    + N++ +CD K  F Y+  G  GS  D+ +L+
Subjt:  -----ELIKRHVP---NCLGALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILR

AT3G55350.1 PIF / Ping-Pong family of plant transposases3.1e-0535.82Show/hide
Query:  VPNCLGALDETYIKVNVPAEDRPTFRTRKGE--IATNVLGVCDTKGDFVYVLAGWEGSAADSRILRD
        +PNC GA+D T+I +N+PA +        GE   +  +  V D    F+ V+AGW GS  D  +L++
Subjt:  VPNCLGALDETYIKVNVPAEDRPTFRTRKGE--IATNVLGVCDTKGDFVYVLAGWEGSAADSRILRD

AT5G28950.1 unknown protein3.0e-1648.68Show/hide
Query:  NCLGALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSR-KNGLQVPK
        +C+GA+D+T+I   V  +  P+FR RKG+I+ N+L  C+   +F+YVL+GWEGSA DS++L D L+R  N L VP+
Subjt:  NCLGALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSR-KNGLQVPK

AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)3.2e-2635.8Show/hide
Query:  CRQSTRIDRRTFAILCHLLRNVAGLSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAVFQLYEELIK------------RHVP
        C ++ R+D+  F  LC LL+    L  T  + +E  +A+FL ++ H+++ R +Q  F   GET+SRHFN VL AV  + ++  +             +  
Subjt:  CRQSTRIDRRTFAILCHLLRNVAGLSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAVFQLYEELIK------------RHVP

Query:  NCLGALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSRKNGLQVPKG
        +C+G +D  +I V V  +++  FR   G +  NVL        F YVLAGWEGSA+D ++L   L+R+N LQVP+G
Subjt:  NCLGALDETYIKVNVPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSRKNGLQVPKG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATACACGAGTCAGATCTTGTGTGTCGGCAGAGCACGCGGATAGATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTGGCTGGTCTTTCGTTGACTGA
GATTGTTGATGTTGAGGAAATGATAGCAATGTTCTTGCACGTCCTTGCTCATGACGTGAAGAACCGCATCATCCAATGGGAATTTGTACGGTTCGGTGAGACAGTATCTC
GACATTTTAACATCGTATTGTTGGCTGTTTTTCAACTGTACGAGGAGTTGATAAAGAGACATGTTCCGAATTGCCTTGGTGCGTTAGACGAGACGTACATAAAGGTCAAC
GTCCCCGCAGAAGATCGGCCTACATTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTGGGGGTGTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTG
GGAAGGATCTGCAGCAGACTCGCGGATCCTACGTGATGTCCTTTCACGAAAAAATGGACTACAAGTGCCAAAGGGTATATCTTCTTTATAA
mRNA sequenceShow/hide mRNA sequence
ATGATACACGAGTCAGATCTTGTGTGTCGGCAGAGCACGCGGATAGATAGGCGAACATTCGCAATTCTATGCCATTTACTTAGAAATGTGGCTGGTCTTTCGTTGACTGA
GATTGTTGATGTTGAGGAAATGATAGCAATGTTCTTGCACGTCCTTGCTCATGACGTGAAGAACCGCATCATCCAATGGGAATTTGTACGGTTCGGTGAGACAGTATCTC
GACATTTTAACATCGTATTGTTGGCTGTTTTTCAACTGTACGAGGAGTTGATAAAGAGACATGTTCCGAATTGCCTTGGTGCGTTAGACGAGACGTACATAAAGGTCAAC
GTCCCCGCAGAAGATCGGCCTACATTCAGAACGCGTAAGGGGGAAATTGCCACAAACGTTCTGGGGGTGTGTGACACGAAAGGGGATTTCGTTTATGTCCTCGCCGGTTG
GGAAGGATCTGCAGCAGACTCGCGGATCCTACGTGATGTCCTTTCACGAAAAAATGGACTACAAGTGCCAAAGGGTATATCTTCTTTATAA
Protein sequenceShow/hide protein sequence
MIHESDLVCRQSTRIDRRTFAILCHLLRNVAGLSLTEIVDVEEMIAMFLHVLAHDVKNRIIQWEFVRFGETVSRHFNIVLLAVFQLYEELIKRHVPNCLGALDETYIKVN
VPAEDRPTFRTRKGEIATNVLGVCDTKGDFVYVLAGWEGSAADSRILRDVLSRKNGLQVPKGISSL