; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc07g0189081 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc07g0189081
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy1-copia retrotransposon protein
Genome locationCMiso1.1chr07:7727646..7729238
RNA-Seq ExpressionCmc07g0189081
SyntenyCmc07g0189081
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR025724 - GAG-pre-integrase domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036643.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.3e-26988.87Show/hide
Query:  MENSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSYTYVIESV
        M NSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASS  Y+IES 
Subjt:  MENSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSYTYVIESV

Query:  NLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTK
        NLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKC IC+ESKFHKKPFK V+ RT +LLELIHSDLADFRTT SR GKNYYVSFVDDYSRFTKIYLI+TK
Subjt:  NLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTK

Query:  DEAGSMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLN
        +EA SMF+KF AESENQLGK+IKRLR DRGGEYSDKTLK+FCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACF+LN
Subjt:  DEAGSMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLN

Query:  RISHKRVDKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSKR
        RI HKR+DKTPYELWK HAPNLSYLKV GCLAKV  PALKK+TVG KTFDCIFIGYAQNS AYRFMCLNDKTINESRDAEFFEHVFPLKQSL APSLS R
Subjt:  RISHKRVDKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSKR

Query:  MHDPENPSSVSETPVSETVNTSNLRCELELRRSKRQRTEKSFDPNFLSTFIVKRRDEIDCNFKNLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVM
        MHDPE    VSE PVSE V+T NL CELE RRSKRQRTEKSF P+FLSTFIV+RRDEIDCNF NL+LI+ED KTYQEALNSV+S MWKE IKSELDSL M
Subjt:  MHDPENPSSVSETPVSETVNTSNLRCELELRRSKRQRTEKSFDPNFLSTFIVKRRDEIDCNFKNLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVM

Query:  NHTWDLVDLPMGNKPIRCKWIFKRKTKSNG
        NHTW+LVDLPMGNKPIRCKWIFKRKTK NG
Subjt:  NHTWDLVDLPMGNKPIRCKWIFKRKTKSNG

KAA0045258.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.9e-29799.04Show/hide
Query:  MENSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSYTYVIESV
        MENSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSYTYVIESV
Subjt:  MENSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSYTYVIESV

Query:  NLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTK
        NLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTK
Subjt:  NLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTK

Query:  DEAGSMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLN
        DEAGSMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLN
Subjt:  DEAGSMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLN

Query:  RISHKRVDKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSKR
        RISHKRVDKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSKR
Subjt:  RISHKRVDKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSKR

Query:  MHDPENPSSVSETPVSETVNTSNLRCELELRRSKRQRTEKSFDPNFLSTFIVKRRDEIDCNFKNLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVM
        MHDPENPSSVSETPVSETVNTSNLRCELELRRSKRQRTEKSFDPNFLSTFIVKRRDEIDCNFKNLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVM
Subjt:  MHDPENPSSVSETPVSETVNTSNLRCELELRRSKRQRTEKSFDPNFLSTFIVKRRDEIDCNFKNLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVM

Query:  NHTWDLVDLPMGNKPIRCKWIFK
        NHTWDLVDLPMGNKPIR  +  K
Subjt:  NHTWDLVDLPMGNKPIRCKWIFK

TYK04394.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]2.1e-26489.56Show/hide
Query:  MENSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSYTYVIESV
        M NSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASS  Y+IES 
Subjt:  MENSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSYTYVIESV

Query:  NLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTK
        NLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKCPIC+ESKFHKKPFK V+ RT +LLELIHSDLADFRTT SR GKNYYVSFVDDYSRFTKIYLI+TK
Subjt:  NLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTK

Query:  DEAGSMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLN
        +EA SMF+KF AESENQLGK+IKRLR DRGGEYSDKTLK+FCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACF+LN
Subjt:  DEAGSMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLN

Query:  RISHKRVDKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSKR
        RI HKR+DKTPYELWK HAPNLSYLKV GCLAKV  PALKK+TVG KTFDCIFIGYAQNS AYRFMCLNDKTINESRDAEFFEHVFPLKQSL APSLS R
Subjt:  RISHKRVDKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSKR

Query:  MHDPENPSSVSETPVSETVNTSNLRCELELRRSKRQRTEKSFDPNFLSTFIVKRRDEIDCNFKNLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVM
        MHDPE    VSE PVSETV+T NL CELE RRSKRQRTEKSF P+FLSTFIV+RRDEIDCNF NL+LIDEDPKTYQEALNSV+S MWKE IKSELDSL M
Subjt:  MHDPENPSSVSETPVSETVNTSNLRCELELRRSKRQRTEKSFDPNFLSTFIVKRRDEIDCNFKNLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVM

Query:  NHTWDLVDLPMGNKPIR
        NHTW+LVDLPMGNKPIR
Subjt:  NHTWDLVDLPMGNKPIR

TYK06518.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]1.4e-27189.25Show/hide
Query:  MENSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSYTYVIESV
        M NSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASS  Y+IES 
Subjt:  MENSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSYTYVIESV

Query:  NLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTK
        NLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKC IC+ESKFHKKPFK V+ RT +LLELIHSDLADFRTT SR GKNYYVSFVDDYSR+TKIYLI+TK
Subjt:  NLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTK

Query:  DEAGSMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLN
        +EA SMF+KF AESENQLGK+IKRLR DRGGEYSDKTLK+FCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACF+LN
Subjt:  DEAGSMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLN

Query:  RISHKRVDKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSKR
        RI HKR+DKTPYELWK HAPNLSYLKV GCLAKV  PALKK+TVG KTFDCIFIGYAQNS AYRFMCLNDKTINESRDAEFFEHVFPLKQSL APSLS R
Subjt:  RISHKRVDKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSKR

Query:  MHDPENPSSVSETPVSETVNTSNLRCELELRRSKRQRTEKSFDPNFLSTFIVKRRDEIDCNFKNLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVM
        MHDPE    VSE PVSETV+T NL CELE RRSKRQRTEKSF P+FLSTFIV+RRDEIDCNF NL+LIDEDPKTYQEALNSV+S MWKE IKSELDSL M
Subjt:  MHDPENPSSVSETPVSETVNTSNLRCELELRRSKRQRTEKSFDPNFLSTFIVKRRDEIDCNFKNLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVM

Query:  NHTWDLVDLPMGNKPIRCKWIFKRKTKSNG
        NHTW+LVDLPMGNKPIRCKWIFKRKTK NG
Subjt:  NHTWDLVDLPMGNKPIRCKWIFKRKTKSNG

TYK27931.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa]6.5e-26689.27Show/hide
Query:  MENSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSYTYVIESV
        M NSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASS  Y+IES 
Subjt:  MENSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSYTYVIESV

Query:  NLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTK
        NLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKC IC+ESKFHKKPFK V+ RT +LLELIHSDLADFRTT SR GKNYYVSFVDDYSRFTKIYLI+TK
Subjt:  NLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTK

Query:  DEAGSMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLN
        +EA SMF+KF AESENQLGK+IKRLR DRGGEYSDKTLK+FCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACF+LN
Subjt:  DEAGSMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLN

Query:  RISHKRVDKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSKR
        RI HKR+DKTPYELWK HAPNLSYLKV GCLAKV  PALKK+TVG KTFDCIFIGYAQNS AYRFMCLNDKTINESRDAEFFEHVFPLKQSL APSLS R
Subjt:  RISHKRVDKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSKR

Query:  MHDPENPSSVSETPVSETVNTSNLRCELELRRSKRQRTEKSFDPNFLSTFIVKRRDEIDCNFKNLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVM
        MHDPE    VSE PVSETV+T NL CELE RRSKRQRTEKSF P+FLSTFIV+RRDEIDCNF NL+LIDEDPKTYQEALNSV+SSMWKE IKSELDSL M
Subjt:  MHDPENPSSVSETPVSETVNTSNLRCELELRRSKRQRTEKSFDPNFLSTFIVKRRDEIDCNFKNLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVM

Query:  NHTWDLVDLPMGNKPIRCKWIF
        NHTW+LVDLPMGNKPIRCK  F
Subjt:  NHTWDLVDLPMGNKPIRCKWIF

TrEMBL top hitse value%identityAlignment
A0A5A7T166 Ty1-copia retrotransposon protein6.1e-27088.87Show/hide
Query:  MENSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSYTYVIESV
        M NSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASS  Y+IES 
Subjt:  MENSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSYTYVIESV

Query:  NLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTK
        NLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKC IC+ESKFHKKPFK V+ RT +LLELIHSDLADFRTT SR GKNYYVSFVDDYSRFTKIYLI+TK
Subjt:  NLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTK

Query:  DEAGSMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLN
        +EA SMF+KF AESENQLGK+IKRLR DRGGEYSDKTLK+FCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACF+LN
Subjt:  DEAGSMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLN

Query:  RISHKRVDKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSKR
        RI HKR+DKTPYELWK HAPNLSYLKV GCLAKV  PALKK+TVG KTFDCIFIGYAQNS AYRFMCLNDKTINESRDAEFFEHVFPLKQSL APSLS R
Subjt:  RISHKRVDKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSKR

Query:  MHDPENPSSVSETPVSETVNTSNLRCELELRRSKRQRTEKSFDPNFLSTFIVKRRDEIDCNFKNLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVM
        MHDPE    VSE PVSE V+T NL CELE RRSKRQRTEKSF P+FLSTFIV+RRDEIDCNF NL+LI+ED KTYQEALNSV+S MWKE IKSELDSL M
Subjt:  MHDPENPSSVSETPVSETVNTSNLRCELELRRSKRQRTEKSFDPNFLSTFIVKRRDEIDCNFKNLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVM

Query:  NHTWDLVDLPMGNKPIRCKWIFKRKTKSNG
        NHTW+LVDLPMGNKPIRCKWIFKRKTK NG
Subjt:  NHTWDLVDLPMGNKPIRCKWIFKRKTKSNG

A0A5A7TQW7 Ty1-copia retrotransposon protein9.1e-29899.04Show/hide
Query:  MENSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSYTYVIESV
        MENSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSYTYVIESV
Subjt:  MENSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSYTYVIESV

Query:  NLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTK
        NLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTK
Subjt:  NLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTK

Query:  DEAGSMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLN
        DEAGSMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLN
Subjt:  DEAGSMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLN

Query:  RISHKRVDKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSKR
        RISHKRVDKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSKR
Subjt:  RISHKRVDKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSKR

Query:  MHDPENPSSVSETPVSETVNTSNLRCELELRRSKRQRTEKSFDPNFLSTFIVKRRDEIDCNFKNLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVM
        MHDPENPSSVSETPVSETVNTSNLRCELELRRSKRQRTEKSFDPNFLSTFIVKRRDEIDCNFKNLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVM
Subjt:  MHDPENPSSVSETPVSETVNTSNLRCELELRRSKRQRTEKSFDPNFLSTFIVKRRDEIDCNFKNLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVM

Query:  NHTWDLVDLPMGNKPIRCKWIFK
        NHTWDLVDLPMGNKPIR  +  K
Subjt:  NHTWDLVDLPMGNKPIRCKWIFK

A0A5D3BZI1 Ty1-copia retrotransposon protein1.0e-26489.56Show/hide
Query:  MENSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSYTYVIESV
        M NSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASS  Y+IES 
Subjt:  MENSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSYTYVIESV

Query:  NLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTK
        NLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKCPIC+ESKFHKKPFK V+ RT +LLELIHSDLADFRTT SR GKNYYVSFVDDYSRFTKIYLI+TK
Subjt:  NLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTK

Query:  DEAGSMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLN
        +EA SMF+KF AESENQLGK+IKRLR DRGGEYSDKTLK+FCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACF+LN
Subjt:  DEAGSMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLN

Query:  RISHKRVDKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSKR
        RI HKR+DKTPYELWK HAPNLSYLKV GCLAKV  PALKK+TVG KTFDCIFIGYAQNS AYRFMCLNDKTINESRDAEFFEHVFPLKQSL APSLS R
Subjt:  RISHKRVDKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSKR

Query:  MHDPENPSSVSETPVSETVNTSNLRCELELRRSKRQRTEKSFDPNFLSTFIVKRRDEIDCNFKNLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVM
        MHDPE    VSE PVSETV+T NL CELE RRSKRQRTEKSF P+FLSTFIV+RRDEIDCNF NL+LIDEDPKTYQEALNSV+S MWKE IKSELDSL M
Subjt:  MHDPENPSSVSETPVSETVNTSNLRCELELRRSKRQRTEKSFDPNFLSTFIVKRRDEIDCNFKNLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVM

Query:  NHTWDLVDLPMGNKPIR
        NHTW+LVDLPMGNKPIR
Subjt:  NHTWDLVDLPMGNKPIR

A0A5D3C5T2 Ty1-copia retrotransposon protein6.5e-27289.25Show/hide
Query:  MENSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSYTYVIESV
        M NSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASS  Y+IES 
Subjt:  MENSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSYTYVIESV

Query:  NLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTK
        NLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKC IC+ESKFHKKPFK V+ RT +LLELIHSDLADFRTT SR GKNYYVSFVDDYSR+TKIYLI+TK
Subjt:  NLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTK

Query:  DEAGSMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLN
        +EA SMF+KF AESENQLGK+IKRLR DRGGEYSDKTLK+FCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACF+LN
Subjt:  DEAGSMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLN

Query:  RISHKRVDKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSKR
        RI HKR+DKTPYELWK HAPNLSYLKV GCLAKV  PALKK+TVG KTFDCIFIGYAQNS AYRFMCLNDKTINESRDAEFFEHVFPLKQSL APSLS R
Subjt:  RISHKRVDKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSKR

Query:  MHDPENPSSVSETPVSETVNTSNLRCELELRRSKRQRTEKSFDPNFLSTFIVKRRDEIDCNFKNLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVM
        MHDPE    VSE PVSETV+T NL CELE RRSKRQRTEKSF P+FLSTFIV+RRDEIDCNF NL+LIDEDPKTYQEALNSV+S MWKE IKSELDSL M
Subjt:  MHDPENPSSVSETPVSETVNTSNLRCELELRRSKRQRTEKSFDPNFLSTFIVKRRDEIDCNFKNLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVM

Query:  NHTWDLVDLPMGNKPIRCKWIFKRKTKSNG
        NHTW+LVDLPMGNKPIRCKWIFKRKTK NG
Subjt:  NHTWDLVDLPMGNKPIRCKWIFKRKTKSNG

A0A5D3DWC4 Ty1-copia retrotransposon protein3.1e-26689.27Show/hide
Query:  MENSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSYTYVIESV
        M NSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASS  Y+IES 
Subjt:  MENSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSYTYVIESV

Query:  NLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTK
        NLWHGRLGHVNFASIRKLKD+RLINTSE+HETGKC IC+ESKFHKKPFK V+ RT +LLELIHSDLADFRTT SR GKNYYVSFVDDYSRFTKIYLI+TK
Subjt:  NLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTK

Query:  DEAGSMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLN
        +EA SMF+KF AESENQLGK+IKRLR DRGGEYSDKTLK+FCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACF+LN
Subjt:  DEAGSMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLN

Query:  RISHKRVDKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSKR
        RI HKR+DKTPYELWK HAPNLSYLKV GCLAKV  PALKK+TVG KTFDCIFIGYAQNS AYRFMCLNDKTINESRDAEFFEHVFPLKQSL APSLS R
Subjt:  RISHKRVDKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSKR

Query:  MHDPENPSSVSETPVSETVNTSNLRCELELRRSKRQRTEKSFDPNFLSTFIVKRRDEIDCNFKNLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVM
        MHDPE    VSE PVSETV+T NL CELE RRSKRQRTEKSF P+FLSTFIV+RRDEIDCNF NL+LIDEDPKTYQEALNSV+SSMWKE IKSELDSL M
Subjt:  MHDPENPSSVSETPVSETVNTSNLRCELELRRSKRQRTEKSFDPNFLSTFIVKRRDEIDCNFKNLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVM

Query:  NHTWDLVDLPMGNKPIRCKWIF
        NHTW+LVDLPMGNKPIRCK  F
Subjt:  NHTWDLVDLPMGNKPIRCKWIF

SwissProt top hitse value%identityAlignment
P04146 Copia protein6.7e-4832.08Show/hide
Query:  ILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGY-LSNGLFVLNTISMNANASSYTYVIESVNLWHGRLGHVNFAS
        I++L +   ++L +VL+      NL+S   L  AG+ I  +   V ++KNG  V K   + N + V+N  + + NA        +  LWH R GH++   
Subjt:  ILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGY-LSNGLFVLNTISMNANASSYTYVIESVNLWHGRLGHVNFAS

Query:  IRKLK------DLRLINTSESHETGKCPICVESKFHKKPFKLVDSRT--IDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTKDEAGSM
        + ++K      D  L+N  E      C  C+  K  + PFK +  +T     L ++HSD+    T  + D KNY+V FVD ++ +   YLIK K +  SM
Subjt:  IRKLK------DLRLINTSESHETGKCPICVESKFHKKPFKLVDSRT--IDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTKDEAGSM

Query:  FLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLNRISHKR
        F  F A+SE     K+  L +D G EY    ++ FC   GI +  T P++PQ NG++ER  RT+ E    M+  + L  + WGEAVL+A +++NRI  + 
Subjt:  FLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLNRISHKR

Query:  V---DKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQN------SVAYRFMCLNDKTINESR----DAEFFEHVFPLKQSLS
        +    KTPYE+W    P L +L+V G    V     K+     K+F  IF+GY  N      +V  +F+   D  ++E+      A  FE VF LK S  
Subjt:  V---DKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQN------SVAYRFMCLNDKTINESR----DAEFFEHVFPLKQSLS

Query:  A-----PSLSKRMHDPENPSSVSE
        +     P+ S+++   E P+   E
Subjt:  A-----PSLSKRMHDPENPSSVSE

P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-941.4e-7432.21Show/hide
Query:  MENSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSYTYVIESV
        M N++ + + G G + +K   G TL L +V +VP LR NL+SG  L+R G +      K  LTK    + KG     L+  N        ++    I SV
Subjt:  MENSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSYTYVIESV

Query:  NLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTK
        +LWH R+GH++   ++ L    LI+ ++      C  C+  K H+  F+    R +++L+L++SD+       S  G  Y+V+F+DD SR   +Y++KTK
Subjt:  NLWHGRLGHVNFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTK

Query:  DEAGSMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLN
        D+   +F KF+A  E + G+K+KRLR D GGEY+ +  +++C S+GI HE T P +PQ NG+AER NRT+ E + +ML  + L  + WGEAV +AC+++N
Subjt:  DEAGSMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLN

Query:  RI-SHKRVDKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSK
        R  S     + P  +W     + S+LKV GC A    P  +++ +  K+  CIFIGY      YR      K +  SRD  F E      +  +A  +S+
Subjt:  RI-SHKRVDKTPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSK

Query:  RMHDPENPS-----SVSETPVSETVNTSNLRCELE-------------------------------LRRSKRQRTEKSFDPNFLSTFIVKRRDEIDCNFK
        ++ +   P+     S S  P S    T  +  + E                               LRRS+R R E    P   ST  V   D       
Subjt:  RMHDPENPS-----SVSETPVSETVNTSNLRCELE-------------------------------LRRSKRQRTEKSFDPNFLSTFIVKRRDEIDCNFK

Query:  NLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRK
             D +P++ +E L+  E +   + ++ E++SL  N T+ LV+LP G +P++CKW+FK K
Subjt:  NLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRK

Q12491 Transposon Ty2-B Gag-Pol polyprotein4.1e-2128.46Show/hide
Query:  LTKNGDF--VGKGYL---SNGLFVLNTISMNANASSYTYVIESVNLWHGRLGHVNFASIRK-LKDLRLINTSESH------ETGKCPICVESKF----HK
        + K+GDF  + K YL         +N ++ + + + Y Y      L H  LGH NF SI+K LK   +    ES        T +CP C+  K     H 
Subjt:  LTKNGDF--VGKGYL---SNGLFVLNTISMNANASSYTYVIESVNLWHGRLGHVNFASIRK-LKDLRLINTSESH------ETGKCPICVESKF----HK

Query:  KPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTKDEAG--SMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCE
        K  +L    + +  + +H+D+        +   +Y++SF D+ +RF  +Y +  + E    ++F    A  +NQ   ++  +++DRG EY++KTL  F  
Subjt:  KPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTKDEAG--SMFLKFNAESENQLGKKIKRLRLDRGGEYSDKTLKDFCE

Query:  SNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLNRISHKRVDKT
        + GI   +T     + +G+AER NRTL      +L  SGL +++W  AV  +  + N +   + DK+
Subjt:  SNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLNRISHKRVDKT

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE11.4e-3223.28Show/hide
Query:  TSGKTLSLSNVLYVPSLRRNLVSGSLL---NRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLF-----VLNTISMNANASSYTYVIESVNLWHGRLGHVN
        T  + L+L N+LYVP++ +NL+S   L   N   ++      +V     G  + +G   + L+         +S+ A+ SS      + + WH RLGH  
Subjt:  TSGKTLSLSNVLYVPSLRRNLVSGSLL---NRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLF-----VLNTISMNANASSYTYVIESVNLWHGRLGHVN

Query:  FASIRK-LKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTKDEAGSMFLKF
         + +   + +  L   + SH+   C  C+ +K +K PF      +   LE I+SD+       S D   YYV FVD ++R+T +Y +K K +    F+ F
Subjt:  FASIRK-LKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTKDEAGSMFLKF

Query:  NAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLNRISHKRVD-K
            EN+   +I     D GGE+    L ++   +GI H  + P++P+ NG++ERK+R + E    +L  + +    W  A   A +++NR+    +  +
Subjt:  NAESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLNRISHKRVD-K

Query:  TPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLS----------------
        +P++     +PN   L+V GC          +  +  K+  C+F+GY+    AY  + L    +  SR   F E+ FP    L+                
Subjt:  TPYELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLS----------------

Query:  --------------APSLSKRMHDPENPSSVSETPVSETVNTSNL---------------------------RCELELRRSKRQRTEKSFDPN-------
                      APS S   H    PSS S    +  V++SNL                             + + +    Q T ++   N       
Subjt:  --------------APSLSKRMHDPENPSSVSETPVSETVNTSNL---------------------------RCELELRRSKRQRTEKSFDPN-------

Query:  -FLST------------------------------------FIVKRRDEIDCNFKNL------YLIDEDPK-----------TYQEALNSVESSMWKETI
          LST                                     IV   ++   N  ++       +I  +PK             + A+ +++   W+  +
Subjt:  -FLST------------------------------------FIVKRRDEIDCNFKNL------YLIDEDPK-----------TYQEALNSVESSMWKETI

Query:  KSELDSLVMNHTWDLVDLPMGNKPI-RCKWIFKRKTKSNG
         SE+++ + NHTWDLV  P  +  I  C+WIF +K  S+G
Subjt:  KSELDSLVMNHTWDLVDLPMGNKPI-RCKWIFKRKTKSNG

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE29.1e-3728.26Show/hide
Query:  TSGKTLSLSNVLYVPSLRRNLVSGSLL---NRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLF---VLNTISMNANASSYTYVIESVNLWHGRLGHVNFA
        TS ++L L+ VLYVP++ +NL+S   L   NR  ++      +V     G  + +G   + L+   + ++ +++  AS  +    S   WH RLGH + A
Subjt:  TSGKTLSLSNVLYVPSLRRNLVSGSLL---NRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLF---VLNTISMNANASSYTYVIESVNLWHGRLGHVNFA

Query:  SIRK-LKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTKDEAGSMFLKFNA
         +   + +  L   + SH+   C  C  +K HK PF      +   LE I+SD+       S D   YYV FVD ++R+T +Y +K K +    F+ F +
Subjt:  SIRK-LKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTKDEAGSMFLKFNA

Query:  ESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLNRISHKRVD-KTP
          EN+   +I  L  D GGE+    L+D+   +GI H  + P++P+ NG++ERK+R + EM   +L  + +    W  A   A +++NR+    +  ++P
Subjt:  ESENQLGKKIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLNRISHKRVD-KTP

Query:  YELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSKRMHDPENPSSVS
        ++      PN   LKV GC          +  +  K+  C F+GY+    AY  + +    +  SR  +F E  FP   +    S S+       P+  S
Subjt:  YELWKEHAPNLSYLKVCGCLAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSKRMHDPENPSSVS

Query:  ETPVSET
         T +  T
Subjt:  ETPVSET

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 87.7e-0737.7Show/hide
Query:  EDPKTYQEALNSVESSMWKETIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKSNG
        ++P TY EA    E  +W   +  E+ ++   HTW++  LP   KPI CKW++K K  S+G
Subjt:  EDPKTYQEALNSVESSMWKETIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKSNG

ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)3.2e-0534.92Show/hide
Query:  IDEDPKTYQEALNSVESSMWKETIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKSNG
        I ++PK+    + +++   W + ++ ELD+L  N TW LV  P+    + CKW+FK K  S+G
Subjt:  IDEDPKTYQEALNSVESSMWKETIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKSNG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAAACTCAGCCACTGCAGGAGTAATCGGGAAAGGGAAGGTTATTTTAAAGTTAACTTCTGGAAAAACTTTGTCACTAAGTAATGTTCTATATGTCCCTTCCCTACG
TAGAAACCTGGTATCTGGGAGTTTGTTGAATCGGGCCGGGCTTAAAATTGTACTGGAAGGTGACAAAGTTGTCCTCACCAAAAACGGAGATTTTGTCGGTAAGGGGTATC
TGTCTAATGGTCTGTTTGTGCTAAACACAATTTCCATGAATGCAAATGCTTCTAGTTATACCTACGTGATTGAATCTGTTAACTTATGGCATGGTAGACTAGGACATGTG
AACTTTGCATCAATTAGGAAACTTAAAGACTTAAGACTTATTAATACTTCTGAGTCGCATGAAACTGGTAAATGCCCCATTTGTGTAGAAAGTAAATTCCATAAGAAACC
TTTCAAACTAGTTGATTCTAGAACTATTGATCTACTAGAATTAATTCACTCGGATCTAGCCGATTTTAGAACCACTACTAGTAGAGATGGTAAAAACTACTATGTATCTT
TTGTTGATGATTACTCTAGATTTACTAAGATATACTTGATAAAAACAAAAGATGAAGCTGGTAGTATGTTTTTAAAATTTAATGCAGAATCTGAAAATCAGCTAGGGAAA
AAGATAAAAAGATTAAGATTAGATAGAGGTGGTGAGTATTCTGATAAAACTCTTAAAGACTTTTGTGAGTCAAATGGTATTATCCATGAATTTACTGCTCCTTACTCACC
ACAACAAAATGGCATAGCAGAACGGAAAAATAGAACTCTTAAAGAAATGATGAATGCCATGTTATTAAGCTCCGGTCTATCTGATAATATGTGGGGAGAAGCCGTGTTGT
CTGCATGTTTTGTTCTTAATAGGATTTCCCACAAAAGGGTAGACAAAACTCCCTACGAACTCTGGAAAGAACATGCACCAAATCTTTCCTACTTGAAGGTCTGTGGATGC
TTGGCTAAGGTATCATTTCCTGCATTGAAGAAATCTACGGTAGGGTCTAAAACCTTTGATTGTATATTTATCGGGTATGCTCAAAATAGTGTTGCATATAGGTTTATGTG
TTTAAATGATAAAACTATAAACGAATCTAGAGATGCAGAATTCTTTGAGCATGTATTTCCGTTAAAGCAATCATTGTCTGCTCCTAGCTTATCTAAAAGAATGCATGATC
CTGAAAACCCCTCAAGCGTTAGTGAAACACCTGTTTCTGAAACTGTTAATACTTCAAACCTAAGATGTGAATTAGAACTTAGGAGAAGTAAAAGACAGAGAACTGAGAAA
AGTTTCGATCCAAATTTCTTAAGCACTTTCATAGTGAAAAGGCGTGATGAAATTGACTGTAACTTCAAAAACTTGTACTTAATAGATGAGGACCCTAAAACTTACCAAGA
AGCGCTGAACTCTGTAGAGTCAAGCATGTGGAAAGAGACCATTAAAAGTGAACTGGATTCACTGGTCATGAATCATACATGGGACCTAGTGGACCTTCCTATGGGAAACA
AGCCAATTAGATGTAAGTGGATCTTCAAAAGAAAAACAAAATCAAATGGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAAAACTCAGCCACTGCAGGAGTAATCGGGAAAGGGAAGGTTATTTTAAAGTTAACTTCTGGAAAAACTTTGTCACTAAGTAATGTTCTATATGTCCCTTCCCTACG
TAGAAACCTGGTATCTGGGAGTTTGTTGAATCGGGCCGGGCTTAAAATTGTACTGGAAGGTGACAAAGTTGTCCTCACCAAAAACGGAGATTTTGTCGGTAAGGGGTATC
TGTCTAATGGTCTGTTTGTGCTAAACACAATTTCCATGAATGCAAATGCTTCTAGTTATACCTACGTGATTGAATCTGTTAACTTATGGCATGGTAGACTAGGACATGTG
AACTTTGCATCAATTAGGAAACTTAAAGACTTAAGACTTATTAATACTTCTGAGTCGCATGAAACTGGTAAATGCCCCATTTGTGTAGAAAGTAAATTCCATAAGAAACC
TTTCAAACTAGTTGATTCTAGAACTATTGATCTACTAGAATTAATTCACTCGGATCTAGCCGATTTTAGAACCACTACTAGTAGAGATGGTAAAAACTACTATGTATCTT
TTGTTGATGATTACTCTAGATTTACTAAGATATACTTGATAAAAACAAAAGATGAAGCTGGTAGTATGTTTTTAAAATTTAATGCAGAATCTGAAAATCAGCTAGGGAAA
AAGATAAAAAGATTAAGATTAGATAGAGGTGGTGAGTATTCTGATAAAACTCTTAAAGACTTTTGTGAGTCAAATGGTATTATCCATGAATTTACTGCTCCTTACTCACC
ACAACAAAATGGCATAGCAGAACGGAAAAATAGAACTCTTAAAGAAATGATGAATGCCATGTTATTAAGCTCCGGTCTATCTGATAATATGTGGGGAGAAGCCGTGTTGT
CTGCATGTTTTGTTCTTAATAGGATTTCCCACAAAAGGGTAGACAAAACTCCCTACGAACTCTGGAAAGAACATGCACCAAATCTTTCCTACTTGAAGGTCTGTGGATGC
TTGGCTAAGGTATCATTTCCTGCATTGAAGAAATCTACGGTAGGGTCTAAAACCTTTGATTGTATATTTATCGGGTATGCTCAAAATAGTGTTGCATATAGGTTTATGTG
TTTAAATGATAAAACTATAAACGAATCTAGAGATGCAGAATTCTTTGAGCATGTATTTCCGTTAAAGCAATCATTGTCTGCTCCTAGCTTATCTAAAAGAATGCATGATC
CTGAAAACCCCTCAAGCGTTAGTGAAACACCTGTTTCTGAAACTGTTAATACTTCAAACCTAAGATGTGAATTAGAACTTAGGAGAAGTAAAAGACAGAGAACTGAGAAA
AGTTTCGATCCAAATTTCTTAAGCACTTTCATAGTGAAAAGGCGTGATGAAATTGACTGTAACTTCAAAAACTTGTACTTAATAGATGAGGACCCTAAAACTTACCAAGA
AGCGCTGAACTCTGTAGAGTCAAGCATGTGGAAAGAGACCATTAAAAGTGAACTGGATTCACTGGTCATGAATCATACATGGGACCTAGTGGACCTTCCTATGGGAAACA
AGCCAATTAGATGTAAGTGGATCTTCAAAAGAAAAACAAAATCAAATGGATAA
Protein sequenceShow/hide protein sequence
MENSATAGVIGKGKVILKLTSGKTLSLSNVLYVPSLRRNLVSGSLLNRAGLKIVLEGDKVVLTKNGDFVGKGYLSNGLFVLNTISMNANASSYTYVIESVNLWHGRLGHV
NFASIRKLKDLRLINTSESHETGKCPICVESKFHKKPFKLVDSRTIDLLELIHSDLADFRTTTSRDGKNYYVSFVDDYSRFTKIYLIKTKDEAGSMFLKFNAESENQLGK
KIKRLRLDRGGEYSDKTLKDFCESNGIIHEFTAPYSPQQNGIAERKNRTLKEMMNAMLLSSGLSDNMWGEAVLSACFVLNRISHKRVDKTPYELWKEHAPNLSYLKVCGC
LAKVSFPALKKSTVGSKTFDCIFIGYAQNSVAYRFMCLNDKTINESRDAEFFEHVFPLKQSLSAPSLSKRMHDPENPSSVSETPVSETVNTSNLRCELELRRSKRQRTEK
SFDPNFLSTFIVKRRDEIDCNFKNLYLIDEDPKTYQEALNSVESSMWKETIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKSNG