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Cmc07g0189531 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc07g0189531
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationCMiso1.1chr07:8262770..8263129
RNA-Seq ExpressionCmc07g0189531
SyntenyCmc07g0189531
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032699.1 putative mitochondrial protein [Cucumis melo var. makuwa]9.7e-5392.92Show/hide
Query:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR
        MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFK EGYCDSDWA+DTNDRKSTS YV FIGN AFTWSSKKQPIVTLSTCEAEYVVVA CVCHAVWLR
Subjt:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR

Query:  NLLKIVGILQDDP
        NLLK VGILQD P
Subjt:  NLLKIVGILQDDP

KAA0052395.1 putative copia-type polyprotein [Cucumis melo var. makuwa]4.7e-6399.16Show/hide
Query:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR
        MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTS YVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR
Subjt:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR

Query:  NLLKIVGILQDDPNCDPCR
        NLLKIVGILQDDPNCDPCR
Subjt:  NLLKIVGILQDDPNCDPCR

KAA0056915.1 retrovirus-related pol polyprotein from transposon tnt 1-94 [Cucumis melo var. makuwa]1.7e-5291.15Show/hide
Query:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR
        MESPTTTHLKVAKRILRYL+GTLDYGLFYSSSKEFK EGYCDSDWA DTNDRKSTS YVFFIGN AFTWSSKKQPIVTLSTCEAEYV  A CVCHAVWLR
Subjt:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR

Query:  NLLKIVGILQDDP
        NLLK VGILQ+DP
Subjt:  NLLKIVGILQDDP

TYJ97307.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]7.4e-5391.15Show/hide
Query:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR
        MESPTTTHLKVAKRILRYL+GTLDYGLFYSSSKEFK EGYCDSDWA DTNDRKSTS YVFFIGN AFTWSSKKQPIVTLSTCEAEY+  A CVCHAVWLR
Subjt:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR

Query:  NLLKIVGILQDDP
        NLLK VGILQDDP
Subjt:  NLLKIVGILQDDP

TYK18362.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]1.7e-5291.15Show/hide
Query:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR
        MESPTTTHLKVAKRILRYL+GTLDYGLFYSSSKEFK EGYCDSDWA DTNDRKSTS YVFFIGN AFTWSSKKQPIVTLSTCEAEYV  A CVCHAVWLR
Subjt:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR

Query:  NLLKIVGILQDDP
        NLLK VGILQ+DP
Subjt:  NLLKIVGILQDDP

TrEMBL top hitse value%identityAlignment
A0A5A7SJX6 Retrovirus-related Pol polyprotein from transposon TNT 1-948.0e-5391.15Show/hide
Query:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR
        MESPTTTHLKVAKRILRYL+GTLDYGLFYSSSKEFK EGYCDSDWA DTNDRKSTS YVFFIGN AFTWSSKKQPIVTLSTCEAEYV  A CVCHAVWLR
Subjt:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR

Query:  NLLKIVGILQDDP
        NLLK VGILQ+DP
Subjt:  NLLKIVGILQDDP

A0A5A7V3X9 Retrovirus-related Pol polyprotein from transposon TNT 1-948.0e-5391.15Show/hide
Query:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR
        MESPTTTHLKVAKRILRYL+GTLDYGLFYSSSKEFK EGYCDSDWA DTNDRKSTS YVFFIGN AFTWSSKKQPIVTLSTCEAEYV  A CVCHAVWLR
Subjt:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR

Query:  NLLKIVGILQDDP
        NLLK VGILQ+DP
Subjt:  NLLKIVGILQDDP

A0A5D3BDV6 Retrovirus-related Pol polyprotein from transposon TNT 1-943.6e-5391.15Show/hide
Query:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR
        MESPTTTHLKVAKRILRYL+GTLDYGLFYSSSKEFK EGYCDSDWA DTNDRKSTS YVFFIGN AFTWSSKKQPIVTLSTCEAEY+  A CVCHAVWLR
Subjt:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR

Query:  NLLKIVGILQDDP
        NLLK VGILQDDP
Subjt:  NLLKIVGILQDDP

A0A5D3BJ51 Putative mitochondrial protein4.7e-5392.92Show/hide
Query:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR
        MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFK EGYCDSDWA+DTNDRKSTS YV FIGN AFTWSSKKQPIVTLSTCEAEYVVVA CVCHAVWLR
Subjt:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR

Query:  NLLKIVGILQDDP
        NLLK VGILQD P
Subjt:  NLLKIVGILQDDP

A0A5D3D6N3 Putative copia-type polyprotein2.3e-6399.16Show/hide
Query:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR
        MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTS YVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR
Subjt:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR

Query:  NLLKIVGILQDDPNCDPCR
        NLLKIVGILQDDPNCDPCR
Subjt:  NLLKIVGILQDDPNCDPCR

SwissProt top hitse value%identityAlignment
P04146 Copia protein9.2e-1442.31Show/hide
Query:  KRILRYLKGTLDYGLFYSSSKEF--KFEGYCDSDWAKDTNDRKSTSRYVF-FIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLRNLLKIVGIL
        KR+LRYLKGT+D  L +  +  F  K  GY DSDWA    DRKST+ Y+F         W++K+Q  V  S+ EAEY+ +   V  A+WL+ LL  + I 
Subjt:  KRILRYLKGTLDYGLFYSSSKEF--KFEGYCDSDWAKDTNDRKSTSRYVF-FIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLRNLLKIVGIL

Query:  QDDP
         ++P
Subjt:  QDDP

P0CV72 Secreted RxLR effector protein 1615.8e-1643.75Show/hide
Query:  PTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWL
        P  TH +  KR+LRYL+ T  YGL ++ +   K  GY D+DWA D   R+STS Y+F +     +W SKKQ  V LS+ E EY+ ++     AVWL
Subjt:  PTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWL

P92519 Uncharacterized mitochondrial protein AtMg008103.4e-1638.78Show/hide
Query:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVW
        M  PT     + KR+LRY+KGT+ +GL+   + +   + +CDSDWA  T+ R+ST+ +  F+G    +WS+K+QP V+ S+ E EY  +AL      W
Subjt:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVW

Q94HW2 Retrovirus-related Pol polyprotein from transposon RE13.1e-1742.59Show/hide
Query:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR
        M  PT  HL+  KRILRYL GT ++G+F           Y D+DWA D +D  ST+ Y+ ++G+   +WSSKKQ  V  S+ EAEY  VA       W+ 
Subjt:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR

Query:  NLLKIVGI
        +LL  +GI
Subjt:  NLLKIVGI

Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE24.7e-1841.59Show/hide
Query:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR
        M  PT  H    KR+LRYL GT D+G+F           Y D+DWA DT+D  ST+ Y+ ++G+   +WSSKKQ  V  S+ EAEY  VA       W+ 
Subjt:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLR

Query:  NLLKIVGILQDDP
        +LL  +GI    P
Subjt:  NLLKIVGILQDDP

Arabidopsis top hitse value%identityAlignment
AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 81.7e-1534.95Show/hide
Query:  ESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLRN
        E+P   H +   +IL Y+KGT+  GLFYSS  E + + + D+ +    + R+ST+ Y  F+G    +W SKKQ +V+ S+ EAEY  ++      +WL  
Subjt:  ESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLRN

Query:  LLK
          +
Subjt:  LLK

ATMG00240.1 Gag-Pol-related retrotransposon family protein9.5e-0633.96Show/hide
Query:  TTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRY
        T  ++   ++L Y+KGT+  GLFYS++ + + + + DSDWA   + R+S + +
Subjt:  TTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRY

ATMG00810.1 DNA/RNA polymerases superfamily protein2.4e-1738.78Show/hide
Query:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVW
        M  PT     + KR+LRY+KGT+ +GL+   + +   + +CDSDWA  T+ R+ST+ +  F+G    +WS+K+QP V+ S+ E EY  +AL      W
Subjt:  MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVW


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCTCCTACAACTACTCATTTGAAAGTGGCAAAGAGAATTCTTCGTTACCTCAAAGGTACACTTGACTATGGGTTGTTTTATTCTTCATCTAAAGAATTC
AAGTTTGAAGGCTATTGTGATAGTGACTGGGCTAAAGATACTAATGATCGAAAGAGCACTAGTAGATATGTTTTCTTTATTGGTAATCCTGCATTTACTTGGAGT
TCTAAGAAGCAACCTATTGTGACATTATCAACTTGTGAAGCAGAATACGTTGTTGTAGCTTTATGTGTTTGTCATGCAGTTTGGTTAAGAAATTTGTTAAAGATA
GTTGGAATTTTGCAAGATGATCCAAACTGTGATCCATGTAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGAATCTCCTACAACTACTCATTTGAAAGTGGCAAAGAGAATTCTTCGTTACCTCAAAGGTACACTTGACTATGGGTTGTTTTATTCTTCATCTAAAGAATTC
AAGTTTGAAGGCTATTGTGATAGTGACTGGGCTAAAGATACTAATGATCGAAAGAGCACTAGTAGATATGTTTTCTTTATTGGTAATCCTGCATTTACTTGGAGT
TCTAAGAAGCAACCTATTGTGACATTATCAACTTGTGAAGCAGAATACGTTGTTGTAGCTTTATGTGTTTGTCATGCAGTTTGGTTAAGAAATTTGTTAAAGATA
GTTGGAATTTTGCAAGATGATCCAAACTGTGATCCATGTAGATAA
Protein sequenceShow/hide protein sequence
MESPTTTHLKVAKRILRYLKGTLDYGLFYSSSKEFKFEGYCDSDWAKDTNDRKSTSRYVFFIGNPAFTWSSKKQPIVTLSTCEAEYVVVALCVCHAVWLRNLLKI
VGILQDDPNCDPCR