CuGenDBv2

Gene ID	Cmc07g0189631
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr07:8348437..8349217
RNA-Seq Expression	Cmc07g0189631
Synteny	Cmc07g0189631
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0016020 - membrane (cellular component) GO:0043227 - membrane-bounded organelle (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR041373 - Reverse transcriptase, RNase H-like domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

AAO45752.1 pol protein [Cucumis melo subsp. melo]

2.0e-102

77.52

Show/hide

Query:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW
        MSF LTNAP+VFMDLMN+V REFLDTFVIVFI+DIL+YSKTEA+HEEHLRMVL+TLR +KL+ KFSKCEFWL+QVSFLGHVVSKAG SVDP KIE VT W
Subjt:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW

Query:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGAPFV----------CLEQGLY-------------------ASKKGLGCILMQQDKVVAYA
         R ST+SEVRSFLGL  YYRRFVENFSRIATPLTQLTRKGAPFV           L+Q L                    ASKKGLGC+LMQQ KVVAYA
Subjt:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGAPFV----------CLEQGLY-------------------ASKKGLGCILMQQDKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR
        SRQLKSHEQNYPTHDLELAAVVF LKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR

KAA0042119.1 pol protein [Cucumis melo var. makuwa]

2.0e-102

77.91

Show/hide

Query:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW
        MSF LTNAP+VFMDLMN+V REFLDTFVIVFI+DIL+YSKTEA+HEEHLRMVL+TLR +KL+ KFSKCEFWL+QVSFLGHVVSKAG SVDP KIE VTSW
Subjt:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW

Query:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGAPFV----C------LEQGLY-------------------ASKKGLGCILMQQDKVVAYA
         R ST+SEVRSFLGL  YYRRFVENFSRIATPLTQLTRKGAPFV    C      L+Q L                    AS+KGLGC+LMQQ KVVAYA
Subjt:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGAPFV----C------LEQGLY-------------------ASKKGLGCILMQQDKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR
        SRQLKSHEQNYPTHDLELAAVVF LKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR

KAA0043070.1 reverse transcriptase [Cucumis melo var. makuwa]

2.0e-102

77.91

Show/hide

Query:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW
        MSF LTNAP+VFMDLMN+V REFLDTFVIVFI+DIL+YSKTEA+HEEHLRMVL+TLR +KL+ KFSKCEFWL+QVSFLGHVVSKAG SVDP KIETVTSW
Subjt:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW

Query:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGAPFV----C------LEQGLY-------------------ASKKGLGCILMQQDKVVAYA
         R ST+SEVRSFLGL  YYRRFVENFSRIATPLTQLTRKGAPFV    C      L+Q L                     SKKGLGC+LMQQ KVVAYA
Subjt:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGAPFV----C------LEQGLY-------------------ASKKGLGCILMQQDKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR
        SRQLKSHEQNYPTHDLELA VVF LKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR

TYK01613.1 pol protein [Cucumis melo var. makuwa]

2.0e-102

77.52

Show/hide

Query:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW
        MSF LTNAP+VFMDLMN+V REFLDTFVIVFI+DIL+YSKTEA+HEEHLRMVL+TLR +KL+ KFSKCEFWL+QVSFLGHVVSKAG SVDP KIE VT W
Subjt:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW

Query:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGAPFV----------CLEQGLY-------------------ASKKGLGCILMQQDKVVAYA
         R ST+SEVRSFLGL  YYRRFVENFSRIATPLTQLTRKGAPFV           L+Q L                    ASKKGLGC+LMQQ KVVAYA
Subjt:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGAPFV----------CLEQGLY-------------------ASKKGLGCILMQQDKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR
        SRQLKSHEQNYPTHDLELAAVVF LKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR

TYK29834.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]

1.0e-103

82.48

Show/hide

Query:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW
        MSF LTNAP+VFMDLMN+V REFLDTFVIVF +DIL+YSK EA+HE+HLRMVL+TLRA+KL+ KFSKCEFWL+Q+SFLGHVVSKAG SVDP KIE VTSW
Subjt:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW

Query:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGAPFVCLEQGLY-----ASKKGLGCILMQQDKVVAYASRQLKSHEQNYPTHDLELAAVVFT
        PR ST+SEVRSFLGL  YYR FVENFSRIATPLTQLTRKG PFV  +  ++     ASKKGLGC+LMQQ KVVAYASRQ+KSHEQNYPTHDLELAAVVF 
Subjt:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGAPFVCLEQGLY-----ASKKGLGCILMQQDKVVAYASRQLKSHEQNYPTHDLELAAVVFT

Query:  LKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR
        LKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR
Subjt:  LKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TIB4 Reverse transcriptase

9.5e-103

77.91

Show/hide

Query:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW
        MSF LTNAP+VFMDLMN+V REFLDTFVIVFI+DIL+YSKTEA+HEEHLRMVL+TLR +KL+ KFSKCEFWL+QVSFLGHVVSKAG SVDP KIETVTSW
Subjt:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW

Query:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGAPFV----C------LEQGLY-------------------ASKKGLGCILMQQDKVVAYA
         R ST+SEVRSFLGL  YYRRFVENFSRIATPLTQLTRKGAPFV    C      L+Q L                     SKKGLGC+LMQQ KVVAYA
Subjt:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGAPFV----C------LEQGLY-------------------ASKKGLGCILMQQDKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR
        SRQLKSHEQNYPTHDLELA VVF LKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR

A0A5A7TLA3 Pol protein

9.5e-103

77.91

Show/hide

Query:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW
        MSF LTNAP+VFMDLMN+V REFLDTFVIVFI+DIL+YSKTEA+HEEHLRMVL+TLR +KL+ KFSKCEFWL+QVSFLGHVVSKAG SVDP KIE VTSW
Subjt:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW

Query:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGAPFV----C------LEQGLY-------------------ASKKGLGCILMQQDKVVAYA
         R ST+SEVRSFLGL  YYRRFVENFSRIATPLTQLTRKGAPFV    C      L+Q L                    AS+KGLGC+LMQQ KVVAYA
Subjt:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGAPFV----C------LEQGLY-------------------ASKKGLGCILMQQDKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR
        SRQLKSHEQNYPTHDLELAAVVF LKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR

A0A5D3BPI1 Reverse transcriptase

9.5e-103

77.52

Show/hide

Query:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW
        MSF LTNAP+VFMDLMN+V REFLDTFVIVFI+DIL+YSKTEA+HEEHLRMVL+TLR +KL+ KFSKCEFWL+QVSFLGHVVSKAG SVDP KIE VT W
Subjt:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW

Query:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGAPFV----------CLEQGLY-------------------ASKKGLGCILMQQDKVVAYA
         R ST+SEVRSFLGL  YYRRFVENFSRIATPLTQLTRKGAPFV           L+Q L                    ASKKGLGC+LMQQ KVVAYA
Subjt:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGAPFV----------CLEQGLY-------------------ASKKGLGCILMQQDKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR
        SRQLKSHEQNYPTHDLELAAVVF LKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR

A0A5D3E1T8 Ty3-gypsy retrotransposon protein

5.1e-104

82.48

Show/hide

Query:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW
        MSF LTNAP+VFMDLMN+V REFLDTFVIVF +DIL+YSK EA+HE+HLRMVL+TLRA+KL+ KFSKCEFWL+Q+SFLGHVVSKAG SVDP KIE VTSW
Subjt:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW

Query:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGAPFVCLEQGLY-----ASKKGLGCILMQQDKVVAYASRQLKSHEQNYPTHDLELAAVVFT
        PR ST+SEVRSFLGL  YYR FVENFSRIATPLTQLTRKG PFV  +  ++     ASKKGLGC+LMQQ KVVAYASRQ+KSHEQNYPTHDLELAAVVF 
Subjt:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGAPFVCLEQGLY-----ASKKGLGCILMQQDKVVAYASRQLKSHEQNYPTHDLELAAVVFT

Query:  LKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR
        LKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR
Subjt:  LKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR

Q84KB0 Pol protein

9.5e-103

77.52

Show/hide

Query:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW
        MSF LTNAP+VFMDLMN+V REFLDTFVIVFI+DIL+YSKTEA+HEEHLRMVL+TLR +KL+ KFSKCEFWL+QVSFLGHVVSKAG SVDP KIE VT W
Subjt:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW

Query:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGAPFV----------CLEQGLY-------------------ASKKGLGCILMQQDKVVAYA
         R ST+SEVRSFLGL  YYRRFVENFSRIATPLTQLTRKGAPFV           L+Q L                    ASKKGLGC+LMQQ KVVAYA
Subjt:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGAPFV----------CLEQGLY-------------------ASKKGLGCILMQQDKVVAYA

Query:  SRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR
        SRQLKSHEQNYPTHDLELAAVVF LKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR
Subjt:  SRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

4.4e-36

33.2

Show/hide

Query:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW
        M F L NAP+ F   MN +LR  L+   +V+++DI+++S +  +H + L +V E L  + L  +  KCEF  ++ +FLGHV++  G   +P KIE +  +
Subjt:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW

Query:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKG----------------APFVCLEQGLY--------------ASKKGLGCILMQQDKVVAY
        P  +   E+++FLGLT YYR+F+ NF+ IA P+T+  +K                   ++  E  +               AS   LG +L Q    ++Y
Subjt:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKG----------------APFVCLEQGLY--------------ASKKGLGCILMQQDKVVAY

Query:  ASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR
         SR L  HE NY T + EL A+V+  K +RHYL G   +I +DH+ L + +  K+ N +
Subjt:  ASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSLKYFFTQKELNMR

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

1.4e-31

30.66

Show/hide

Query:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW
        + F L NA S+F   ++ VLRE +     V+++D++++S+ E+ H  H+  VL+ L  + +     K  F+ E V +LG +VSK G   DP K++ +  +
Subjt:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW

Query:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQL----------------------TRKGA----------------------PFVCLEQGLYASKKG
        P    + +VRSFLGL  YYR F+++F+ IA P+T +                      T++ A                      PF   +    AS  G
Subjt:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQL----------------------TRKGA----------------------PFVCLEQGLYASKKG

Query:  LGCILMQQDKVVAYASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEK-IQIFTDHKSLKYFFTQKELNMR
        +G +L Q+ + +   SR LK  EQNY T++ EL A+V+ L   +++LYG + I IFTDH+ L +    +  N +
Subjt:  LGCILMQQDKVVAYASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEK-IQIFTDHKSLKYFFTQKELNMR

P20825 Retrovirus-related Pol polyprotein from transposon 297

4.1e-34

32.16

Show/hide

Query:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW
        M F L NAP+ F   MN +LR  L+   +V+++DI+++S +  +H   +++V   L  + L  +  KCEF  ++ +FLGH+V+  G   +P K++ + S+
Subjt:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW

Query:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGA-----------------------PFVCLEQ-------GLYASKKGLGCILMQQDKVVAY
        P  +   E+R+FLGLT YYR+F+ N++ IA P+T   +K                         P + L            AS   LG +L Q    +++
Subjt:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGA-----------------------PFVCLEQ-------GLYASKKGLGCILMQQDKVVAY

Query:  ASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSLKYFFTQKE
         SR L  HE NY   + EL A+V+  K +RHYL G +  I +DH+ L++    KE
Subjt:  ASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSLKYFFTQKE

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

5.0e-32

29.56

Show/hide

Query:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW
        + F L NAP++F  +++ +LRE +     V+I+DI+++S+    H ++LR+VL +L  + L     K  F   QV FLG++V+  G   DP K+  ++  
Subjt:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW

Query:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTR------------------------------------KGAPFVCLEQGLY----ASKKGLGCI
        P  +++ E++ FLG+T YYR+F+++++++A PLT LTR                                    +   F C  +  +    AS   +G +
Subjt:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTR------------------------------------KGAPFVCLEQGLY----ASKKGLGCI

Query:  LMQ----QDKVVAYASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGE-KIQIFTDHKSLKYFFTQKELNMR
        L Q    +D+ +AY SR L   E+NY T + E+ A++++L   R YLYG   I+++TDH+ L +    +  N +
Subjt:  LMQ----QDKVVAYASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGE-KIQIFTDHKSLKYFFTQKELNMR

Q99315 Transposon Ty3-G Gag-Pol polyprotein

8.2e-27

32.8

Show/hide

Query:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW
        M F L NAPS F   M    R+    FV V+++DIL++S++  +H +HL  VLE L+   L  K  KC+F  E+  FLG+ +     +    K   +  +
Subjt:  MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSW

Query:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPL-------TQLTRKGAPFV-------CLEQGLY-------------ASKKGLGCILMQQDK------V
        P   T+ + + FLG+ +YYRRF+ N S+IA P+       +Q T K    +       C    L              ASK G+G +L + D       V
Subjt:  PRHSTISEVRSFLGLTDYYRRFVENFSRIATPL-------TQLTRKGAPFV-------CLEQGLY-------------ASKKGLGCILMQQDK------V

Query:  VAYASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSL
        V Y S+ L+S ++NYP  +LEL  ++  L  +R+ L+G+   + TDH SL
Subjt:  VAYASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSL

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

3.2e-18

42.71

Show/hide

Query:  HLRMVLETLRASKLFEKFSKCEFWLEQVSFLG--HVVSKAGGSVDPTKIETVTSWPRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGA
        HL MVL+     + +    KC F   Q+++LG  H++S  G S DP K+E +  WP     +E+R FLGLT YYRRFV+N+ +I  PLT+L +K +
Subjt:  HLRMVLETLRASKLFEKFSKCEFWLEQVSFLG--HVVSKAGGSVDPTKIETVTSWPRHSTISEVRSFLGLTDYYRRFVENFSRIATPLTQLTRKGA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCTTTCAGTTTGACGAATGCTCCATCAGTGTTTATGGATTTGATGAACAAAGTTTTAAGGGAGTTCCTAGACACTTTTGTGATTGTGTTTATTAACGATATTTTGTT
ATATTCCAAGACAGAGGCAAAACATGAGGAGCATTTACGCATGGTTCTAGAAACCCTTCGAGCTAGTAAATTGTTTGAAAAGTTCTCAAAATGTGAGTTTTGGTTGGAGC
AAGTATCCTTTCTAGGCCATGTGGTTTCTAAAGCTGGTGGTTCTGTGGATCCAACTAAGATAGAGACAGTTACCAGTTGGCCCCGACATTCCACAATCAGTGAGGTTCGT
AGCTTTCTGGGTTTAACAGATTATTACCGACGGTTTGTGGAGAACTTTTCCCGTATAGCTACTCCTCTTACTCAGTTGACCAGGAAGGGAGCTCCTTTTGTTTGTTTGGA
GCAAGGCCTTTATGCTTCTAAGAAAGGTTTGGGTTGTATTTTGATGCAGCAAGATAAGGTAGTCGCTTATGCTTCTCGTCAGTTGAAGAGTCATGAGCAGAATTACCCTA
CCCATGATTTAGAGTTGGCAGCAGTAGTTTTTACACTGAAGATATGGAGGCATTACTTGTATGGTGAAAAGATACAGATCTTCACGGATCATAAAAGCTTGAAATACTTC
TTCACTCAGAAGGAATTGAATATGAGATAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSFSLTNAPSVFMDLMNKVLREFLDTFVIVFINDILLYSKTEAKHEEHLRMVLETLRASKLFEKFSKCEFWLEQVSFLGHVVSKAGGSVDPTKIETVTSWPRHSTISEVR
SFLGLTDYYRRFVENFSRIATPLTQLTRKGAPFVCLEQGLYASKKGLGCILMQQDKVVAYASRQLKSHEQNYPTHDLELAAVVFTLKIWRHYLYGEKIQIFTDHKSLKYF
FTQKELNMR

Cmc07g0189631 (gene) of Melon (Charmono) v1.1 genome