; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc07g0189681 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc07g0189681
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr07:8415263..8416011
RNA-Seq ExpressionCmc07g0189681
SyntenyCmc07g0189681
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046359.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.1e-9974.6Show/hide
Query:  MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKIT
        MI+FLL+QY+++F++P  LP KR+IDHRILTLP QKPINVRPYKY H QKEEIEKLV EMLQ GII+P+HSPFSSP+LLVKK DGGWRFCVDY+KLNKIT
Subjt:  MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKIT

Query:  IADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ------------------------
        IADKF IPVIEELLDELHGAT+FSKLDLKSGYHQIRMK+EDIEKTAFRTHEGHYEF+VMPFGL N PATFQSLMNQ                        
Subjt:  IADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ------------------------

Query:  -----HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGMEVD
             HLG+VFA LRDNQLYANRKKCVFAHSQI YLGH ISK G+E D
Subjt:  -----HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGMEVD

KAA0059481.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.5e-9974.6Show/hide
Query:  MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKIT
        MI+FLL+QY+++F++P  LP KR+IDHRILTLP QKPINVRPYKY H QKEEIEKLV EMLQ GII+P+HSPFSSP+LLVKKKDGGWRFCVDY+KLNKIT
Subjt:  MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKIT

Query:  IADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ------------------------
        IADKF IPVIEELLDELHGAT+FSKLDLKSGYHQIRMK+EDIEKTAFRTHEGHYEF+VMPFGL N PATFQS MNQ                        
Subjt:  IADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ------------------------

Query:  -----HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGMEVD
             HLG+VFA LRDNQLYANRKKCVFAHSQI YLGH ISK G+E D
Subjt:  -----HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGMEVD

KAA0065995.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.6e-10175.4Show/hide
Query:  MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKIT
        MI+FLLNQY+++FD P  LP KR +DHRI T+P QKPINVRPYKY H QKEEIEKLV EMLQ GII+P+HSPFSSP+LLVKKKDGGWRFCVDY KLNKIT
Subjt:  MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKIT

Query:  IADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ------------------------
        IADKF IPVIEELLDELHGAT+FSKLDLKSGYHQIRMK+EDIEKTAFRTHEGHYEF+VMPFGL N PATFQSLMNQ                        
Subjt:  IADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ------------------------

Query:  -----HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGMEVD
             HLG+VFAILRDNQLYANRKKCVFAHSQIQYLGH ISK G+E D
Subjt:  -----HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGMEVD

TYK21035.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.1e-10074.6Show/hide
Query:  MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKIT
        MI+FLL+QY+++F++P  LP KR+IDHRILTLP QKPINVRPYKY H QKEEIEKLV EMLQ GII+P+HSPFSSP+LLVKKKDGGWRFCVDY+KLNKIT
Subjt:  MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKIT

Query:  IADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ------------------------
        IADKF IPVIEELLDELHGAT+FSKLDLKSGYHQIRM++EDIEKTAFRTHEGHYEF+VMPFGL N PATFQSLMNQ                        
Subjt:  IADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ------------------------

Query:  -----HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGMEVD
             HLG+VFA LRDNQLYANRKKCVFAHSQI YLGH ISK G+E D
Subjt:  -----HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGMEVD

TYK28944.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.5e-9974.6Show/hide
Query:  MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKIT
        MI+FLL+QY+++F +P  LP KR IDHRILTLP QKPINVRPYKY H QKEEIEKLV EMLQ GII+P+HSPFSSP+LLVKKKDGGWRFCVDY+KLNKIT
Subjt:  MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKIT

Query:  IADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ------------------------
        IADKF IPVIEELLDELHGAT+FSKLDLKSGYHQIRM++EDIEKTAFRTHEGHYEF+VMPFGL N PATFQSLMNQ                        
Subjt:  IADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ------------------------

Query:  -----HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGMEVD
             HLG+VFA LRDNQLYANRKKCVFAHSQI YLGH ISK G+E D
Subjt:  -----HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGMEVD

TrEMBL top hitse value%identityAlignment
A0A5A7TYN3 Ty3/gypsy retrotransposon protein5.5e-10074.6Show/hide
Query:  MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKIT
        MI+FLL+QY+++F++P  LP KR+IDHRILTLP QKPINVRPYKY H QKEEIEKLV EMLQ GII+P+HSPFSSP+LLVKK DGGWRFCVDY+KLNKIT
Subjt:  MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKIT

Query:  IADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ------------------------
        IADKF IPVIEELLDELHGAT+FSKLDLKSGYHQIRMK+EDIEKTAFRTHEGHYEF+VMPFGL N PATFQSLMNQ                        
Subjt:  IADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ------------------------

Query:  -----HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGMEVD
             HLG+VFA LRDNQLYANRKKCVFAHSQI YLGH ISK G+E D
Subjt:  -----HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGMEVD

A0A5A7V194 Ty3/gypsy retrotransposon protein7.2e-10074.6Show/hide
Query:  MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKIT
        MI+FLL+QY+++F++P  LP KR+IDHRILTLP QKPINVRPYKY H QKEEIEKLV EMLQ GII+P+HSPFSSP+LLVKKKDGGWRFCVDY+KLNKIT
Subjt:  MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKIT

Query:  IADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ------------------------
        IADKF IPVIEELLDELHGAT+FSKLDLKSGYHQIRMK+EDIEKTAFRTHEGHYEF+VMPFGL N PATFQS MNQ                        
Subjt:  IADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ------------------------

Query:  -----HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGMEVD
             HLG+VFA LRDNQLYANRKKCVFAHSQI YLGH ISK G+E D
Subjt:  -----HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGMEVD

A0A5A7VJU2 Ty3/gypsy retrotransposon protein1.7e-10175.4Show/hide
Query:  MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKIT
        MI+FLLNQY+++FD P  LP KR +DHRI T+P QKPINVRPYKY H QKEEIEKLV EMLQ GII+P+HSPFSSP+LLVKKKDGGWRFCVDY KLNKIT
Subjt:  MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKIT

Query:  IADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ------------------------
        IADKF IPVIEELLDELHGAT+FSKLDLKSGYHQIRMK+EDIEKTAFRTHEGHYEF+VMPFGL N PATFQSLMNQ                        
Subjt:  IADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ------------------------

Query:  -----HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGMEVD
             HLG+VFAILRDNQLYANRKKCVFAHSQIQYLGH ISK G+E D
Subjt:  -----HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGMEVD

A0A5D3BBH7 Ty3/gypsy retrotransposon protein1.2e-9974.6Show/hide
Query:  MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKIT
        MI+FLL+QY+++F +P  LP KR IDHRILTLP QKPINVRPYKY H QKEEIEKLV EMLQ GII+P+HSPFSSP+LLVKKKDGGWRFCVDY+KLNKIT
Subjt:  MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKIT

Query:  IADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ------------------------
        IADKF IPVIEELLDELHGAT+FSKLDLKSGYHQIRM++EDIEKTAFRTHEGHYEF+VMPFGL N PATFQSLMNQ                        
Subjt:  IADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ------------------------

Query:  -----HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGMEVD
             HLG+VFA LRDNQLYANRKKCVFAHSQI YLGH ISK G+E D
Subjt:  -----HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGMEVD

A0A5D3E325 Ty3/gypsy retrotransposon protein2.5e-10074.6Show/hide
Query:  MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKIT
        MI+FLL+QY+++F++P  LP KR+IDHRILTLP QKPINVRPYKY H QKEEIEKLV EMLQ GII+P+HSPFSSP+LLVKKKDGGWRFCVDY+KLNKIT
Subjt:  MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKIT

Query:  IADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ------------------------
        IADKF IPVIEELLDELHGAT+FSKLDLKSGYHQIRM++EDIEKTAFRTHEGHYEF+VMPFGL N PATFQSLMNQ                        
Subjt:  IADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQ------------------------

Query:  -----HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGMEVD
             HLG+VFA LRDNQLYANRKKCVFAHSQI YLGH ISK G+E D
Subjt:  -----HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGMEVD

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.1e-3336.84Show/hide
Query:  YKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGG-----WRFCVDYQKLNKITIADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRM
        Y Y  A ++E+E  + +ML  GII+ ++SP++SP+ +V KK        +R  +DY+KLN+IT+ D+  IP ++E+L +L     F+ +DL  G+HQI M
Subjt:  YKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGG-----WRFCVDYQKLNKITIADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRM

Query:  KDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMN-----------------------------QHLGIVFAILRDNQLYANRKKCVFAHSQIQYLG
          E + KTAF T  GHYE+L MPFGL N PATFQ  MN                             Q LG+VF  L    L     KC F   +  +LG
Subjt:  KDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMN-----------------------------QHLGIVFAILRDNQLYANRKKCVFAHSQIQYLG

Query:  HNISKKGME
        H ++  G++
Subjt:  HNISKKGME

P20825 Retrovirus-related Pol polyprotein from transposon 2974.6e-3535.46Show/hide
Query:  IRFLLNQYTNL-FDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGG-----WRFCVDYQK
        ++ LLN++ NL +   + L     I H +L      PI  + Y      + E+E  V EML  G+I+ ++SP++SP  +V KK        +R  +DY+K
Subjt:  IRFLLNQYTNL-FDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGG-----WRFCVDYQK

Query:  LNKITIADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMN--------------------
        LN+ITI D++ IP ++E+L +L     F+ +DL  G+HQI M +E I KTAF T  GHYE+L MPFGL N PATFQ  MN                    
Subjt:  LNKITIADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMN--------------------

Query:  ------QHLG---IVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGME
              +HL    +VF  L D  L     KC F   +  +LGH ++  G++
Subjt:  ------QHLG---IVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGME

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein4.9e-3739.72Show/hide
Query:  IDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKITIADKFLIPVIEELLDELHGATIFS
        + H I   P  +   ++PY      ++EI K+V ++L    I P+ SP SSP++LV KKDG +R CVDY+ LNK TI+D F +P I+ LL  +  A IF+
Subjt:  IDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKITIADKFLIPVIEELLDELHGATIFS

Query:  KLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMN---------------------------QHLGIVFAILRDNQLYANRKKC
         LDL SGYHQI M+ +D  KTAF T  G YE+ VMPFGL+N P+TF   M                            +HL  V   L++  L   +KKC
Subjt:  KLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMN---------------------------QHLGIVFAILRDNQLYANRKKC

Query:  VFAHSQIQYLGHNI
         FA  + ++LG++I
Subjt:  VFAHSQIQYLGHNI

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus6.0e-3533.99Show/hide
Query:  MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKK-----DGGWRFCVDYQK
        ++  LL ++  +F+ P +  S        +    Q PI  + Y Y    + E+E+ + E+LQ GII+P++SP++SP+ +V KK     +  +R  VD+++
Subjt:  MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKK-----DGGWRFCVDYQK

Query:  LNKITIADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQ----SLMNQHLG------------
        LN +TI D + IP I   L  L  A  F+ LDL SG+HQI MK+ DI KTAF T  G YEFL +PFGL N PA FQ     ++ +H+G            
Subjt:  LNKITIADKFLIPVIEELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQ----SLMNQHLG------------

Query:  -------------IVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGMEVD
                     +V A L    L  N +K  F  +Q+++LG+ ++  G++ D
Subjt:  -------------IVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGMEVD

Q99315 Transposon Ty3-G Gag-Pol polyprotein4.9e-3739.72Show/hide
Query:  IDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKITIADKFLIPVIEELLDELHGATIFS
        + H I   P  +   ++PY      ++EI K+V ++L    I P+ SP SSP++LV KKDG +R CVDY+ LNK TI+D F +P I+ LL  +  A IF+
Subjt:  IDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKITIADKFLIPVIEELLDELHGATIFS

Query:  KLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMN---------------------------QHLGIVFAILRDNQLYANRKKC
         LDL SGYHQI M+ +D  KTAF T  G YE+ VMPFGL+N P+TF   M                            +HL  V   L++  L   +KKC
Subjt:  KLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMN---------------------------QHLGIVFAILRDNQLYANRKKC

Query:  VFAHSQIQYLGHNI
         FA  + ++LG++I
Subjt:  VFAHSQIQYLGHNI

Arabidopsis top hitse value%identityAlignment
ATMG00850.1 DNA/RNA polymerases superfamily protein1.6e-0653.85Show/hide
Query:  QKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGW
        ++  ++  + EML+A II+P+ SP+SSP+LLV+KKDGGW
Subjt:  QKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGW

ATMG00860.1 DNA/RNA polymerases superfamily protein3.5e-0653.33Show/hide
Query:  HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHN--ISKKGMEVD
        HLG+V  I   +Q YANRKKC F   QI YLGH   IS +G+  D
Subjt:  HLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHN--ISKKGMEVD


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCAGATTCCTATTAAACCAATACACCAACCTGTTTGACACTCCAAAAGCCTTACCATCTAAGAGACTCATAGACCATCGTATCCTCACATTACCAGAACAAAAACC
TATCAATGTACGACCATATAAGTACGACCATGCTCAAAAGGAAGAAATAGAGAAACTTGTTGCAGAAATGCTACAGGCAGGGATAATCAAACCCAACCATAGTCCTTTCT
CAAGTCCTATGCTGCTGGTAAAGAAAAAAGATGGTGGATGGAGGTTTTGTGTGGATTACCAAAAATTGAACAAAATCACAATAGCTGATAAATTCCTCATACCCGTGATT
GAAGAATTGCTAGACGAACTACACGGGGCCACTATTTTTTCAAAACTAGATCTAAAATCTGGTTATCACCAGATTAGAATGAAAGATGAGGATATTGAGAAAACTGCGTT
TCGGACACACGAGGGCCACTATGAATTCCTAGTCATGCCATTTGGGTTGATGAATACCCCTGCCACTTTCCAATCTCTCATGAACCAGCACTTAGGAATAGTGTTTGCAA
TATTGAGGGATAACCAGTTGTATGCTAATCGGAAGAAGTGTGTGTTTGCCCATTCCCAAATACAATATTTAGGCCATAACATATCCAAAAAAGGGATGGAAGTAGATTAG
mRNA sequenceShow/hide mRNA sequence
ATGATCAGATTCCTATTAAACCAATACACCAACCTGTTTGACACTCCAAAAGCCTTACCATCTAAGAGACTCATAGACCATCGTATCCTCACATTACCAGAACAAAAACC
TATCAATGTACGACCATATAAGTACGACCATGCTCAAAAGGAAGAAATAGAGAAACTTGTTGCAGAAATGCTACAGGCAGGGATAATCAAACCCAACCATAGTCCTTTCT
CAAGTCCTATGCTGCTGGTAAAGAAAAAAGATGGTGGATGGAGGTTTTGTGTGGATTACCAAAAATTGAACAAAATCACAATAGCTGATAAATTCCTCATACCCGTGATT
GAAGAATTGCTAGACGAACTACACGGGGCCACTATTTTTTCAAAACTAGATCTAAAATCTGGTTATCACCAGATTAGAATGAAAGATGAGGATATTGAGAAAACTGCGTT
TCGGACACACGAGGGCCACTATGAATTCCTAGTCATGCCATTTGGGTTGATGAATACCCCTGCCACTTTCCAATCTCTCATGAACCAGCACTTAGGAATAGTGTTTGCAA
TATTGAGGGATAACCAGTTGTATGCTAATCGGAAGAAGTGTGTGTTTGCCCATTCCCAAATACAATATTTAGGCCATAACATATCCAAAAAAGGGATGGAAGTAGATTAG
Protein sequenceShow/hide protein sequence
MIRFLLNQYTNLFDTPKALPSKRLIDHRILTLPEQKPINVRPYKYDHAQKEEIEKLVAEMLQAGIIKPNHSPFSSPMLLVKKKDGGWRFCVDYQKLNKITIADKFLIPVI
EELLDELHGATIFSKLDLKSGYHQIRMKDEDIEKTAFRTHEGHYEFLVMPFGLMNTPATFQSLMNQHLGIVFAILRDNQLYANRKKCVFAHSQIQYLGHNISKKGMEVD