| GenBank top hits | e value | %identity | Alignment |
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| KAA0045110.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 7.3e-98 | 82.02 | Show/hide |
Query: MDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGYKCLSQD
MDMGLTLLSQA LPLSFWDEAFSTSVYLINRL TPVLNQLSPLEKLF RQPDY L++FGC+CYPLIRPYQS+KLSY+SKPCTFL YSSSHKGYKCLSQD
Subjt: MDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGYKCLSQD
Query: GHLYISRHVIFDENSFLYASFSSHRIPSSTNNVFNPPVQSILQTPTLSHNVVRHETETFTDNTDNAVIMYPSEIGTSAQTREESTSEGCDAIPLQTEENV
G LYISRHVI ENSF YASF SH I SS + VFNPP QSIL TP L+HN VRHE E FTDN DN IMYP E G SAQTREESTSEGCD IPLQTEE V
Subjt: GHLYISRHVIFDENSFLYASFSSHRIPSSTNNVFNPPVQSILQTPTLSHNVVRHETETFTDNTDNAVIMYPSEIGTSAQTREESTSEGCDAIPLQTEENV
Query: NNASQASSLNTHSMVTRSKSGILKPKAL
NNAS AS+LNTH MVTRSK+GI KPKAL
Subjt: NNASQASSLNTHSMVTRSKSGILKPKAL
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| KAA0048297.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 1.3e-70 | 58.75 | Show/hide |
Query: RENRHIMDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGY
R++R+IM+MGLTLLSQA LPLSFWDEAFSTSVYLINRLPTPVL+ +SPLEKLF R+P++PSL+VFGC+CYP +RPYQSHKLS RS PCTFLGYS+SHKGY
Subjt: RENRHIMDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGY
Query: KCLSQDGHLYISRHVIFDENSFLYASFSSHRIPSSTNNVFNPPVQSILQTPTLSHNVVRHETETFTDNTD--NAVIMYPSEIGTSAQTREESTSEGCDAI
KCL+ DG L+ISRHV+FDENSF YASF+SH + +V +PP+ SI+ + ++HN R T+T +DNTD N I+YP E GT +R++ S G
Subjt: KCLSQDGHLYISRHVIFDENSFLYASFSSHRIPSSTNNVFNPPVQSILQTPTLSHNVVRHETETFTDNTD--NAVIMYPSEIGTSAQTREESTSEGCDAI
Query: PL------QTEENVNNASQASSLNTHSMVTRSKSGILKPK
P QT+ +N Q++S+ H M+T+SK L K
Subjt: PL------QTEENVNNASQASSLNTHSMVTRSKSGILKPK
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| KAA0059801.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 4.5e-100 | 86.3 | Show/hide |
Query: MDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGYKCLSQD
MDMGLT LSQA LPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLF RQPDYPSL+VFGCQCYPLIRPYQSHKLSYRSKP FLGYSSS+KGYKCLSQD
Subjt: MDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGYKCLSQD
Query: GHLYISRHVIFDENSFLYASFSSHRIPSSTNNVFNPPVQSILQTPTLSHNVVRHETETFTDNTDNAVIMYPSEIGTSAQTREESTSEGCDAIPLQTEENV
G LYISRHVIFDENSF YASFSSH IP STNNVFNPPVQSI T TL+HN VRHETETF DNTDNA IMYP E G A+T++ESTSEGCDAI LQTEENV
Subjt: GHLYISRHVIFDENSFLYASFSSHRIPSSTNNVFNPPVQSILQTPTLSHNVVRHETETFTDNTDNAVIMYPSEIGTSAQTREESTSEGCDAIPLQTEENV
Query: NNASQASSLNTHSMVTRSK
NNA QAS+LNTH MVTR K
Subjt: NNASQASSLNTHSMVTRSK
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| KAA0067212.1 retrotransposon protein, putative, Ty1-copia subclass [Cucumis melo var. makuwa] | 8.9e-72 | 59.34 | Show/hide |
Query: RENRHIMDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGY
R++RHIM+MGLTLLSQA LPLSFWDEAF TSVYLIN LPTPVL+ +SPLEKLF R+P++P L+VFGC+CYP RPYQSHKLS RS PCTFLGYS+SHKGY
Subjt: RENRHIMDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGY
Query: KCLSQDGHLYISRHVIFDENSFLYASFSSHRIPSSTNNVFNPPVQSILQTPTLSHNVVRHETETFTDNTD--NAVIMYPSEIGTSAQTREESTSEGCDAI
KCL+ DG L+ISRHV+FDENSF YASF+SH + NV +PP+ SI+ + ++HN R T+T +DNTD N+ I+YP E GT +R++ S G
Subjt: KCLSQDGHLYISRHVIFDENSFLYASFSSHRIPSSTNNVFNPPVQSILQTPTLSHNVVRHETETFTDNTD--NAVIMYPSEIGTSAQTREESTSEGCDAI
Query: PL------QTEENVNNASQASSLNTHSMVTRSKSGILKPKA
P QT+ +N Q++S+ H M+T+SK I KPKA
Subjt: PL------QTEENVNNASQASSLNTHSMVTRSKSGILKPKA
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| TYK10642.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] | 2.2e-70 | 58.75 | Show/hide |
Query: RENRHIMDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGY
R++R+IM+MGLTLLSQA LPLSFWDEAFSTSVYLINRLPTPVL+ +SPLEKLF R+P++PSL+VFGC+CYP +RPYQSHKLS RS PCTFLGYS+SHKGY
Subjt: RENRHIMDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGY
Query: KCLSQDGHLYISRHVIFDENSFLYASFSSHRIPSSTNNVFNPPVQSILQTPTLSHNVVRHETETFTDNTD--NAVIMYPSEIGTSAQTREESTSEGCDAI
KCL+ DG L+ISRHV+FDENSF YASF+SH + +V +PP+ SI+ + ++HN R T+T +DNTD N I+YP E GT +R++ S G
Subjt: KCLSQDGHLYISRHVIFDENSFLYASFSSHRIPSSTNNVFNPPVQSILQTPTLSHNVVRHETETFTDNTD--NAVIMYPSEIGTSAQTREESTSEGCDAI
Query: PL------QTEENVNNASQASSLNTHSMVTRSKSGILKPK
P QT+ +N Q++S+ H M+T+SK L K
Subjt: PL------QTEENVNNASQASSLNTHSMVTRSKSGILKPK
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A5A7U233 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 6.2e-71 | 58.75 | Show/hide |
Query: RENRHIMDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGY
R++R+IM+MGLTLLSQA LPLSFWDEAFSTSVYLINRLPTPVL+ +SPLEKLF R+P++PSL+VFGC+CYP +RPYQSHKLS RS PCTFLGYS+SHKGY
Subjt: RENRHIMDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGY
Query: KCLSQDGHLYISRHVIFDENSFLYASFSSHRIPSSTNNVFNPPVQSILQTPTLSHNVVRHETETFTDNTD--NAVIMYPSEIGTSAQTREESTSEGCDAI
KCL+ DG L+ISRHV+FDENSF YASF+SH + +V +PP+ SI+ + ++HN R T+T +DNTD N I+YP E GT +R++ S G
Subjt: KCLSQDGHLYISRHVIFDENSFLYASFSSHRIPSSTNNVFNPPVQSILQTPTLSHNVVRHETETFTDNTD--NAVIMYPSEIGTSAQTREESTSEGCDAI
Query: PL------QTEENVNNASQASSLNTHSMVTRSKSGILKPK
P QT+ +N Q++S+ H M+T+SK L K
Subjt: PL------QTEENVNNASQASSLNTHSMVTRSKSGILKPK
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| A0A5A7V237 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 2.2e-100 | 86.3 | Show/hide |
Query: MDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGYKCLSQD
MDMGLT LSQA LPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLF RQPDYPSL+VFGCQCYPLIRPYQSHKLSYRSKP FLGYSSS+KGYKCLSQD
Subjt: MDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGYKCLSQD
Query: GHLYISRHVIFDENSFLYASFSSHRIPSSTNNVFNPPVQSILQTPTLSHNVVRHETETFTDNTDNAVIMYPSEIGTSAQTREESTSEGCDAIPLQTEENV
G LYISRHVIFDENSF YASFSSH IP STNNVFNPPVQSI T TL+HN VRHETETF DNTDNA IMYP E G A+T++ESTSEGCDAI LQTEENV
Subjt: GHLYISRHVIFDENSFLYASFSSHRIPSSTNNVFNPPVQSILQTPTLSHNVVRHETETFTDNTDNAVIMYPSEIGTSAQTREESTSEGCDAIPLQTEENV
Query: NNASQASSLNTHSMVTRSK
NNA QAS+LNTH MVTR K
Subjt: NNASQASSLNTHSMVTRSK
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| A0A5A7VFQ6 Retrotransposon protein, putative, Ty1-copia subclass | 4.3e-72 | 59.34 | Show/hide |
Query: RENRHIMDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGY
R++RHIM+MGLTLLSQA LPLSFWDEAF TSVYLIN LPTPVL+ +SPLEKLF R+P++P L+VFGC+CYP RPYQSHKLS RS PCTFLGYS+SHKGY
Subjt: RENRHIMDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGY
Query: KCLSQDGHLYISRHVIFDENSFLYASFSSHRIPSSTNNVFNPPVQSILQTPTLSHNVVRHETETFTDNTD--NAVIMYPSEIGTSAQTREESTSEGCDAI
KCL+ DG L+ISRHV+FDENSF YASF+SH + NV +PP+ SI+ + ++HN R T+T +DNTD N+ I+YP E GT +R++ S G
Subjt: KCLSQDGHLYISRHVIFDENSFLYASFSSHRIPSSTNNVFNPPVQSILQTPTLSHNVVRHETETFTDNTD--NAVIMYPSEIGTSAQTREESTSEGCDAI
Query: PL------QTEENVNNASQASSLNTHSMVTRSKSGILKPKA
P QT+ +N Q++S+ H M+T+SK I KPKA
Subjt: PL------QTEENVNNASQASSLNTHSMVTRSKSGILKPKA
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| A0A5D3CH97 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.1e-70 | 58.75 | Show/hide |
Query: RENRHIMDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGY
R++R+IM+MGLTLLSQA LPLSFWDEAFSTSVYLINRLPTPVL+ +SPLEKLF R+P++PSL+VFGC+CYP +RPYQSHKLS RS PCTFLGYS+SHKGY
Subjt: RENRHIMDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGY
Query: KCLSQDGHLYISRHVIFDENSFLYASFSSHRIPSSTNNVFNPPVQSILQTPTLSHNVVRHETETFTDNTD--NAVIMYPSEIGTSAQTREESTSEGCDAI
KCL+ DG L+ISRHV+FDENSF YASF+SH + +V +PP+ SI+ + ++HN R T+T +DNTD N I+YP E GT +R++ S G
Subjt: KCLSQDGHLYISRHVIFDENSFLYASFSSHRIPSSTNNVFNPPVQSILQTPTLSHNVVRHETETFTDNTD--NAVIMYPSEIGTSAQTREESTSEGCDAI
Query: PL------QTEENVNNASQASSLNTHSMVTRSKSGILKPK
P QT+ +N Q++S+ H M+T+SK L K
Subjt: PL------QTEENVNNASQASSLNTHSMVTRSKSGILKPK
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| A0A5D3DJG8 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 3.5e-98 | 82.02 | Show/hide |
Query: MDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGYKCLSQD
MDMGLTLLSQA LPLSFWDEAFSTSVYLINRL TPVLNQLSPLEKLF RQPDY L++FGC+CYPLIRPYQS+KLSY+SKPCTFL YSSSHKGYKCLSQD
Subjt: MDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGYKCLSQD
Query: GHLYISRHVIFDENSFLYASFSSHRIPSSTNNVFNPPVQSILQTPTLSHNVVRHETETFTDNTDNAVIMYPSEIGTSAQTREESTSEGCDAIPLQTEENV
G LYISRHVI ENSF YASF SH I SS + VFNPP QSIL TP L+HN VRHE E FTDN DN IMYP E G SAQTREESTSEGCD IPLQTEE V
Subjt: GHLYISRHVIFDENSFLYASFSSHRIPSSTNNVFNPPVQSILQTPTLSHNVVRHETETFTDNTDNAVIMYPSEIGTSAQTREESTSEGCDAIPLQTEENV
Query: NNASQASSLNTHSMVTRSKSGILKPKAL
NNAS AS+LNTH MVTRSK+GI KPKAL
Subjt: NNASQASSLNTHSMVTRSKSGILKPKAL
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| P04146 Copia protein | 2.7e-07 | 26.41 | Show/hide |
Query: VSHVLTLHNKMELLRENRHIMDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVL--NQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYR
V H L+ E R R I + T++S A L SFW EA T+ YLINR+P+ L + +P E +++P L+VFG Y I+ Q K +
Subjt: VSHVLTLHNKMELLRENRHIMDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVL--NQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYR
Query: SKPCTFLGYSSSHKGYKCLSQDGHLYI-SRHVIFDENSFL------YASFSSHRIPSSTNNVFNPPVQSILQTPTLSHNVVRHETETFTDNTDNAVIMYP
S F+GY + G+K +I +R V+ DE + + + + S N F + I+QT + + + D+ ++ +P
Subjt: SKPCTFLGYSSSHKGYKCLSQDGHLYI-SRHVIFDENSFL------YASFSSHRIPSSTNNVFNPPVQSILQTPTLSHNVVRHETETFTDNTDNAVIMYP
Query: SEIGTSAQTREESTSEGCDAIPLQTEENVNN
++ QT + S+ CD I + +N
Subjt: SEIGTSAQTREESTSEGCDAIPLQTEENVNN
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| P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-94 | 1.2e-13 | 32.73 | Show/hide |
Query: RENRHIMDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGY
R NR I++ ++L A LP SFW EA T+ YLINR P+ L P +++ Y LKVFGC+ + + Q KL +S PC F+GY GY
Subjt: RENRHIMDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGY
Query: KCLSQDGHLYI-SRHVIFDENSFLYASFSSHRIPSSTNNVFNPPVQSILQTPTLSHNVVRHETET
+ I SR V+F E+ A+ S ++ N + + + P+ S+N E+ T
Subjt: KCLSQDGHLYI-SRHVIFDENSFLYASFSSHRIPSSTNNVFNPPVQSILQTPTLSHNVVRHETET
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| Q94HW2 Retrovirus-related Pol polyprotein from transposon RE1 | 2.0e-34 | 33.97 | Show/hide |
Query: RENRHIMDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGY
R++RHI++ GLTLLS A +P ++W AF+ +VYLINRLPTP+L SP +KLF P+Y L+VFGC CYP +RPY HKL +S+ C FLGYS + Y
Subjt: RENRHIMDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGY
Query: KCLS-QDGHLYISRHVIFDENSFLYASFSSHRIP-----SSTNNVFNPPVQSILQTPTL-------SHNVVR----------------------------
CL Q LYISRHV FDEN F ++++ + P ++ V++P +TP L H+
Subjt: KCLS-QDGHLYISRHVIFDENSFLYASFSSHRIP-----SSTNNVFNPPVQSILQTPTL-------SHNVVR----------------------------
Query: -------------------HETETFTDNTDNAVIMYPS---------EIGTSAQTREESTSEGCDAIPLQTE---------------ENVNNASQASSLN
+T+T T ++ N P+ + T AQ+ S S A T + VNN +QA LN
Subjt: -------------------HETETFTDNTDNAVIMYPS---------EIGTSAQTREESTSEGCDAIPLQTE---------------ENVNNASQASSLN
Query: THSMVTRSKSGILKP
THSM TR+K+GI+KP
Subjt: THSMVTRSKSGILKP
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| Q9ZT94 Retrovirus-related Pol polyprotein from transposon RE2 | 1.4e-35 | 55.91 | Show/hide |
Query: RENRHIMDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGY
R++RHI++MGLTLLS A +P ++W AFS +VYLINRLPTP+L SP +KLF + P+Y LKVFGC CYP +RPY HKL +SK C F+GYS + Y
Subjt: RENRHIMDMGLTLLSQAILPLSFWDEAFSTSVYLINRLPTPVLNQLSPLEKLFDRQPDYPSLKVFGCQCYPLIRPYQSHKLSYRSKPCTFLGYSSSHKGY
Query: KCLS-QDGHLYISRHVIFDENSFLYAS
CL G LY SRHV FDE F +++
Subjt: KCLS-QDGHLYISRHVIFDENSFLYAS
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