CuGenDBv2

Gene ID	Cmc07g0189901
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Genome location	CMiso1.1chr07:8826209..8826643
RNA-Seq Expression	Cmc07g0189901
Synteny	Cmc07g0189901
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003964 - RNA-directed DNA polymerase activity (molecular function) GO:0004190 - aspartic-type endopeptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR000477 - Reverse transcriptase domain IPR043128 - Reverse transcriptase/Diguanylate cyclase domain IPR043502 - DNA/RNA polymerase superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0032541.1 pol protein [Cucumis melo var. makuwa]

1.5e-71

95.83

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW
        MSFGLTNAP VFMDLMNRVFKDFLDS VIVFIDDILIYSKTEAEHEEHLHQVLETLR+NKLYAKFSKCEFWL+KVTFLGHVVSSEGVS+DPAKIEAVTNW
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW

Query:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGTPFV
        PRPSTVSEIRSFLGLA YYRRFVEDFSRIASPLTQLTRKGTPFV
Subjt:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGTPFV

KAA0063098.1 pol protein [Cucumis melo var. makuwa]

1.5e-71

95.83

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW
        MSFGLTNAP VFMDLMNRVFKDFLDS VIVFIDDILIYSKTEAEHEEHLHQVLETLR+NKLYAKFSKCEFWL+KVTFLGHVVSSEGVS+DPAKIEAVTNW
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW

Query:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGTPFV
        PRPSTVSEIRSFLGLA YYRRFVEDFSRIASPLTQLTRKGTPFV
Subjt:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGTPFV

KAA0063793.1 pol protein [Cucumis melo var. makuwa]

1.5e-71

95.83

Show/hide

Query:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW
        MSFGLTNAP VFMDLMNRVFKDFLDS VIVFIDDILIYSKTEAEHEEHLHQVLETLR+NKLYAKFSKCEFWL+KVTFLGHVVSSEGVS+DPAKIEAVTNW
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW

Query:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGTPFV
        PRPSTVSEIRSFLGLA YYRRFVEDFSRIASPLTQLTRKGTPFV
Subjt:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGTPFV

KAA0064255.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]

5.4e-74

100

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW
        MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW

Query:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGTPFV
        PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGTPFV
Subjt:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGTPFV

KAA0066951.1 pol protein [Cucumis melo var. makuwa]

1.5e-71

95.83

Show/hide

Query:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW
        MSFGLTNAP VFMDLMNRVFKDFLDS VIVFIDDILIYSKTEAEHEEHLHQVLETLR+NKLYAKFSKCEFWL+KVTFLGHVVSSEGVS+DPAKIEAVTNW
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW

Query:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGTPFV
        PRPSTVSEIRSFLGLA YYRRFVEDFSRIASPLTQLTRKGTPFV
Subjt:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGTPFV

TrEMBL top hits

e value

%identity

Alignment

A0A5A7V4E4 Reverse transcriptase

7.2e-72

95.83

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW
        MSFGLTNAP VFMDLMNRVFKDFLDS VIVFIDDILIYSKTEAEHEEHLHQVLETLR+NKLYAKFSKCEFWL+KVTFLGHVVSSEGVS+DPAKIEAVTNW
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW

Query:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGTPFV
        PRPSTVSEIRSFLGLA YYRRFVEDFSRIASPLTQLTRKGTPFV
Subjt:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGTPFV

A0A5A7V646 Reverse transcriptase

7.2e-72

95.83

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW
        MSFGLTNAP VFMDLMNRVFKDFLDS VIVFIDDILIYSKTEAEHEEHLHQVLETLR+NKLYAKFSKCEFWL+KVTFLGHVVSSEGVS+DPAKIEAVTNW
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW

Query:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGTPFV
        PRPSTVSEIRSFLGLA YYRRFVEDFSRIASPLTQLTRKGTPFV
Subjt:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGTPFV

A0A5A7V6R2 Reverse transcriptase

7.2e-72

95.83

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW
        MSFGLTNAP VFMDLMNRVFKDFLDS VIVFIDDILIYSKTEAEHEEHLHQVLETLR+NKLYAKFSKCEFWL+KVTFLGHVVSSEGVS+DPAKIEAVTNW
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW

Query:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGTPFV
        PRPSTVSEIRSFLGLA YYRRFVEDFSRIASPLTQLTRKGTPFV
Subjt:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGTPFV

A0A5A7VMR4 Reverse transcriptase

7.2e-72

95.83

Show/hide

Query:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW
        MSFGLTNAP VFMDLMNRVFKDFLDS VIVFIDDILIYSKTEAEHEEHLHQVLETLR+NKLYAKFSKCEFWL+KVTFLGHVVSSEGVS+DPAKIEAVTNW
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW

Query:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGTPFV
        PRPSTVSEIRSFLGLA YYRRFVEDFSRIASPLTQLTRKGTPFV
Subjt:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGTPFV

A0A5D3D515 Retrovirus-related Pol polyprotein from transposon 17.6

2.6e-74

100

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW
        MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW

Query:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGTPFV
        PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGTPFV
Subjt:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGTPFV

SwissProt top hits

e value

%identity

Alignment

P04323 Retrovirus-related Pol polyprotein from transposon 17.6

8.8e-27

41.01

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW
        M FGL NAP  F   MN + +  L+   +V++DDI+++S +  EH + L  V E L    L  +  KCEF  ++ TFLGHV++ +G+  +P KIEA+  +
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW

Query:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRK
        P P+   EI++FLGL  YYR+F+ +F+ IA P+T+  +K
Subjt:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRK

P0CT41 Transposon Tf2-12 polyprotein

2.5e-21

35.25

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW
        M +G++ AP  F   +N +  +  +S V+ ++DDILI+SK+E+EH +H+  VL+ L++  L    +KCEF   +V F+G+ +S +G +     I+ V  W
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW

Query:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRK
         +P    E+R FLG  +Y R+F+   S++  PL  L +K
Subjt:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRK

P10401 Retrovirus-related Pol polyprotein from transposon gypsy

1.1e-24

36.96

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW
        + FGL NA  +F   ++ V ++ +  +  V++DD++I+S+ E++H  H+  VL+ L    +     K  F+ + V +LG +VS +G   DP K++A+  +
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW

Query:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTR
        P P  V ++RSFLGLASYYR F++DF+ IA P+T + +
Subjt:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTR

P20825 Retrovirus-related Pol polyprotein from transposon 297

2.6e-26

39.01

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW
        M FGL NAP  F   MN + +  L+   +V++DDI+I+S +  EH   +  V   L    L  +  KCEF  K+  FLGH+V+ +G+  +P K++A+ ++
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW

Query:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGT
        P P+   EIR+FLGL  YYR+F+ +++ IA P+T   +K T
Subjt:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGT

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus

3.4e-26

36.96

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Query:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW
        + FGL NAP +F  +++ + ++ +  +  V+IDDI+++S+    H ++L  VL +L    L     K  F   +V FLG++V+++G+  DP K+ A++  
Subjt:  MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNW

Query:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTR
        P P++V E++ FLG+ SYYR+F++D++++A PLT LTR
Subjt:  PRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTR

Arabidopsis top hits

e value

%identity

Alignment

ATMG00860.1 DNA/RNA polymerases superfamily protein

1.1e-21

45.83

Show/hide

Query:  HLHQVLETLRSNKLYAKFSKCEFWLKKVTFLG--HVVSSEGVSLDPAKIEAVTNWPRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGT
        HL  VL+    ++ YA   KC F   ++ +LG  H++S EGVS DPAK+EA+  WP P   +E+R FLGL  YYRRFV+++ +I  PLT+L +K +
Subjt:  HLHQVLETLRSNKLYAKFSKCEFWLKKVTFLG--HVVSSEGVSLDPAKIEAVTNWPRPSTVSEIRSFLGLASYYRRFVEDFSRIASPLTQLTRKGT

Sequences

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CDS sequence

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ATGTCTTTTGGTTTGACTAATGCTCCTGTAGTATTCATGGACTTGATGAACAGGGTGTTTAAGGATTTCTTAGACTCGCTCGTCATAGTTTTCATTGACGACATTTTGAT
TTACTCTAAGACTGAGGCTGAGCATGAGGAGCATTTGCACCAGGTTTTGGAGACCCTTCGATCCAATAAGCTGTATGCCAAGTTCTCCAAGTGTGAGTTCTGGCTGAAGA
AGGTGACTTTCCTCGGCCACGTGGTTTCCAGTGAGGGAGTTTCTTTGGACCCAGCAAAGATCGAAGCAGTTACCAATTGGCCTCGACCGTCTACGGTTAGCGAGATTCGT
AGTTTCCTGGGTTTGGCAAGTTACTACAGGAGGTTCGTGGAAGACTTTTCACGTATAGCCAGTCCCTTGACCCAGTTGACCAGGAAGGGAACTCCTTTCGTTTGA

mRNA sequence

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Protein sequence

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MSFGLTNAPVVFMDLMNRVFKDFLDSLVIVFIDDILIYSKTEAEHEEHLHQVLETLRSNKLYAKFSKCEFWLKKVTFLGHVVSSEGVSLDPAKIEAVTNWPRPSTVSEIR
SFLGLASYYRRFVEDFSRIASPLTQLTRKGTPFV

Cmc07g0189901 (gene) of Melon (Charmono) v1.1 genome