; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc07g0190341 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc07g0190341
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationCMiso1.1chr07:9427015..9428022
RNA-Seq ExpressionCmc07g0190341
SyntenyCmc07g0190341
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR000477 - Reverse transcriptase domain
IPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039128.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.7e-17493.75Show/hide
Query:  MEVETDDTYKTDEKEEGDEANIPMIRFLLQQYIDIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV
        MEVET+DTYKTDEKE+GDEA+IPMIRFLLQQY DIFTTPK LPPKRDIDHRILTLP+QKPINVRPYKYGHIQKGEIEKLVAEMLQDG+IRPSRSPYSSPV
Subjt:  MEVETDDTYKTDEKEEGDEANIPMIRFLLQQYIDIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV

Query:  LLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
        LLVKKKDGGWRFCVDY KLNQAT+SDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
Subjt:  LLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV

Query:  FKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYY
        FKPFLRRCVLVFFDDIL YS DITEH+KHLGMVFAVLRDN LYANHKKCVFAHS+IQYLGHQISKAGVEADEDKIRSMV+WPRPSDVTELRGFLGLTGYY
Subjt:  FKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYY

Query:  RRFVKGYSNIATPLLNYYRK
        RRFVKGYSNIATPL    +K
Subjt:  RRFVKGYSNIATPLLNYYRK

KAA0055376.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.1e-17796.25Show/hide
Query:  MEVETDDTYKTDEKEEGDEANIPMIRFLLQQYIDIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV
        M+VETDDTYKTDEKEEGDEA+IPMIRFLLQQY DIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV
Subjt:  MEVETDDTYKTDEKEEGDEANIPMIRFLLQQYIDIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV

Query:  LLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
        LLVKKK+GGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
Subjt:  LLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV

Query:  FKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYY
        FKPFLRRCVLVFF DILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRP DVTELRGFL LTGYY
Subjt:  FKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYY

Query:  RRFVKGYSNIATPLLNYYRK
        RRFVKGYSNIATPL    +K
Subjt:  RRFVKGYSNIATPLLNYYRK

KAA0061073.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]3.8e-17996.88Show/hide
Query:  MEVETDDTYKTDEKEEGDEANIPMIRFLLQQYIDIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV
        MEVETDDTYKTDEKEEGDEA+IPMIRFLLQQY DIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV
Subjt:  MEVETDDTYKTDEKEEGDEANIPMIRFLLQQYIDIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV

Query:  LLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
        LLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEED+EKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
Subjt:  LLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV

Query:  FKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYY
        FKPFLRRCVLVFFDDILVYSRDI E EKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYY
Subjt:  FKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYY

Query:  RRFVKGYSNIATPLLNYYRK
        RRFVKGYSNIATPL    +K
Subjt:  RRFVKGYSNIATPLLNYYRK

TYJ99303.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]2.1e-17796.25Show/hide
Query:  MEVETDDTYKTDEKEEGDEANIPMIRFLLQQYIDIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV
        M+VETDDTYKTDEKEEGDEA+IPMIRFLLQQY DIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV
Subjt:  MEVETDDTYKTDEKEEGDEANIPMIRFLLQQYIDIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV

Query:  LLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
        LLVKKK+GGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
Subjt:  LLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV

Query:  FKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYY
        FKPFLRRCVLVFF DILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRP DVTELRGFL LTGYY
Subjt:  FKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYY

Query:  RRFVKGYSNIATPLLNYYRK
        RRFVKGYSNIATPL    +K
Subjt:  RRFVKGYSNIATPLLNYYRK

TYK14624.1 uncharacterized protein E5676_scaffold1275G00160 [Cucumis melo var. makuwa]9.1e-17391.88Show/hide
Query:  MEVETDDTYKTDEKEEGDEANIPMIRFLLQQYIDIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV
        MEVE ++ YKTD+KE+GDEA+IPMIRFLLQQY DIFTTPKGLPPKRDIDHRILTLP+Q+PINVRPYKYGH+QKGEIE LVAEMLQDG+IRPSRSPYSS V
Subjt:  MEVETDDTYKTDEKEEGDEANIPMIRFLLQQYIDIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV

Query:  LLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
        LLVKKKDGGWRFCVDYRKLNQAT+SDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
Subjt:  LLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV

Query:  FKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYY
        FKPFLRRCVLVFFDDILVYS D+TEHEKHLGM+FAVLRDNQLYANHKKCVFAHS+IQYLGHQISKAGVEAD+DKIRSMVNWPRPSDVTELRGFLGLTGYY
Subjt:  FKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYY

Query:  RRFVKGYSNIATPLLNYYRK
        RRFVKGYSNI TPL    +K
Subjt:  RRFVKGYSNIATPLLNYYRK

TrEMBL top hitse value%identityAlignment
A0A5A7T8C0 Ty3/gypsy retrotransposon protein8.0e-17593.75Show/hide
Query:  MEVETDDTYKTDEKEEGDEANIPMIRFLLQQYIDIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV
        MEVET+DTYKTDEKE+GDEA+IPMIRFLLQQY DIFTTPK LPPKRDIDHRILTLP+QKPINVRPYKYGHIQKGEIEKLVAEMLQDG+IRPSRSPYSSPV
Subjt:  MEVETDDTYKTDEKEEGDEANIPMIRFLLQQYIDIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV

Query:  LLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
        LLVKKKDGGWRFCVDY KLNQAT+SDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
Subjt:  LLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV

Query:  FKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYY
        FKPFLRRCVLVFFDDIL YS DITEH+KHLGMVFAVLRDN LYANHKKCVFAHS+IQYLGHQISKAGVEADEDKIRSMV+WPRPSDVTELRGFLGLTGYY
Subjt:  FKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYY

Query:  RRFVKGYSNIATPLLNYYRK
        RRFVKGYSNIATPL    +K
Subjt:  RRFVKGYSNIATPLLNYYRK

A0A5A7UM77 Ty3/gypsy retrotransposon protein1.0e-17796.25Show/hide
Query:  MEVETDDTYKTDEKEEGDEANIPMIRFLLQQYIDIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV
        M+VETDDTYKTDEKEEGDEA+IPMIRFLLQQY DIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV
Subjt:  MEVETDDTYKTDEKEEGDEANIPMIRFLLQQYIDIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV

Query:  LLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
        LLVKKK+GGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
Subjt:  LLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV

Query:  FKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYY
        FKPFLRRCVLVFF DILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRP DVTELRGFL LTGYY
Subjt:  FKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYY

Query:  RRFVKGYSNIATPLLNYYRK
        RRFVKGYSNIATPL    +K
Subjt:  RRFVKGYSNIATPLLNYYRK

A0A5A7UYM1 Ty3/gypsy retrotransposon protein1.8e-17996.88Show/hide
Query:  MEVETDDTYKTDEKEEGDEANIPMIRFLLQQYIDIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV
        MEVETDDTYKTDEKEEGDEA+IPMIRFLLQQY DIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV
Subjt:  MEVETDDTYKTDEKEEGDEANIPMIRFLLQQYIDIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV

Query:  LLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
        LLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEED+EKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
Subjt:  LLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV

Query:  FKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYY
        FKPFLRRCVLVFFDDILVYSRDI E EKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYY
Subjt:  FKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYY

Query:  RRFVKGYSNIATPLLNYYRK
        RRFVKGYSNIATPL    +K
Subjt:  RRFVKGYSNIATPLLNYYRK

A0A5D3BJ50 Ty3/gypsy retrotransposon protein1.0e-17796.25Show/hide
Query:  MEVETDDTYKTDEKEEGDEANIPMIRFLLQQYIDIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV
        M+VETDDTYKTDEKEEGDEA+IPMIRFLLQQY DIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV
Subjt:  MEVETDDTYKTDEKEEGDEANIPMIRFLLQQYIDIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV

Query:  LLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
        LLVKKK+GGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
Subjt:  LLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV

Query:  FKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYY
        FKPFLRRCVLVFF DILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRP DVTELRGFL LTGYY
Subjt:  FKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYY

Query:  RRFVKGYSNIATPLLNYYRK
        RRFVKGYSNIATPL    +K
Subjt:  RRFVKGYSNIATPLLNYYRK

A0A5D3E0Q7 Transposon Ty3-G Gag-Pol polyprotein4.4e-17391.88Show/hide
Query:  MEVETDDTYKTDEKEEGDEANIPMIRFLLQQYIDIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV
        MEVE ++ YKTD+KE+GDEA+IPMIRFLLQQY DIFTTPKGLPPKRDIDHRILTLP+Q+PINVRPYKYGH+QKGEIE LVAEMLQDG+IRPSRSPYSS V
Subjt:  MEVETDDTYKTDEKEEGDEANIPMIRFLLQQYIDIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPV

Query:  LLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
        LLVKKKDGGWRFCVDYRKLNQAT+SDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV
Subjt:  LLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQV

Query:  FKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYY
        FKPFLRRCVLVFFDDILVYS D+TEHEKHLGM+FAVLRDNQLYANHKKCVFAHS+IQYLGHQISKAGVEAD+DKIRSMVNWPRPSDVTELRGFLGLTGYY
Subjt:  FKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYY

Query:  RRFVKGYSNIATPLLNYYRK
        R+FVKGYSNIATPL    +K
Subjt:  RRFVKGYSNIATPLLNYYRK

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.62.2e-6041.92Show/hide
Query:  YKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPVLLVKKKDGG-----WRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRM
        Y Y    + E+E  + +ML  G+IR S SPY+SP+ +V KK        +R  +DYRKLN+ T+ D+ PIP ++E+L +L     F+ +DL  G+HQI M
Subjt:  YKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPVLLVKKKDGG-----WRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRM

Query:  KEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLG
          E + KTAF T  GHYE+L MPFGL NAPATFQ  MN + +P L +  LV+ DDI+V+S  + EH + LG+VF  L    L     KC F   +  +LG
Subjt:  KEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLG

Query:  HQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYYRRFVKGYSNIATPLLNYYRK
        H ++  G++ + +KI ++  +P P+   E++ FLGLTGYYR+F+  +++IA P+    +K
Subjt:  HQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYYRRFVKGYSNIATPLLNYYRK

P20825 Retrovirus-related Pol polyprotein from transposon 2971.6e-6342.7Show/hide
Query:  ILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPVLLVKKKDGG-----WRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVF
        +L      PI  + Y      + E+E  V EML  G+IR S SPY+SP  +V KK        +R  +DYRKLN+ TI D++PIP ++E+L +L     F
Subjt:  ILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPVLLVKKKDGG-----WRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVF

Query:  SKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANH
        + +DL  G+HQI M EE I KTAF T  GHYE+L MPFGL NAPATFQ  MN + +P L +  LV+ DDI+++S  +TEH   + +VF  L D  L    
Subjt:  SKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANH

Query:  KKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYYRRFVKGYSNIATPLLNYYRK
         KC F   +  +LGH ++  G++ +  K++++V++P P+   E+R FLGLTGYYR+F+  Y++IA P+ +  +K
Subjt:  KKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYYRRFVKGYSNIATPLLNYYRK

Q7LHG5 Transposon Ty3-I Gag-Pol polyprotein2.4e-5940.25Show/hide
Query:  VETDDTYKTDEKEEGDEANIPMIRFLLQQYIDIFTTPKGLPPKR------DIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPY
        +++ +   TD   +     +P+  +L Q+Y +I      LPP+        + H I   P  +   ++PY      + EI K+V ++L +  I PS+SP 
Subjt:  VETDDTYKTDEKEEGDEANIPMIRFLLQQYIDIFTTPKGLPPKR------DIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPY

Query:  SSPVLLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSL
        SSPV+LV KKDG +R CVDYR LN+ATISD FP+P I+ LL  +  A +F+ LDL SGYHQI M+ +D  KTAF T  G YE+ VMPFGL NAP+TF   
Subjt:  SSPVLLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSL

Query:  MNQVFKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGL
        M   F+    R V V+ DDIL++S    EH KHL  V   L++  L    KKC FA  + ++LG+ I    +   + K  ++ ++P P  V + + FLG+
Subjt:  MNQVFKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGL

Query:  TGYYRRFVKGYSNIATPL
          YYRRF+   S IA P+
Subjt:  TGYYRRFVKGYSNIATPL

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus7.2e-6441.04Show/hide
Query:  MIRFLLQQYIDIFTTP-KGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPVLLVKKK-----DGGWRFCVDYR
        ++  LL ++  IF  P  G+  +  +   I T   Q PI  + Y Y    +GE+E+ + E+LQDG+IRPS SPY+SP+ +V KK     +  +R  VD++
Subjt:  MIRFLLQQYIDIFTTP-KGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPVLLVKKK-----DGGWRFCVDYR

Query:  KLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDIL
        +LN  TI D +PIP I   L  L  A  F+ LDL SG+HQI MKE DI KTAF T  G YEFL +PFGL NAPA FQ +++ + +  + +   V+ DDI+
Subjt:  KLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDIL

Query:  VYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYYRRFVKGYSNIATPLLNY
        V+S D   H K+L +V A L    L  N +K  F  +++++LG+ ++  G++AD  K+R++   P P+ V EL+ FLG+T YYR+F++ Y+ +A PL N 
Subjt:  VYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYYRRFVKGYSNIATPLLNY

Query:  YRKMLLN
         R +  N
Subjt:  YRKMLLN

Q99315 Transposon Ty3-G Gag-Pol polyprotein2.4e-5940.25Show/hide
Query:  VETDDTYKTDEKEEGDEANIPMIRFLLQQYIDIFTTPKGLPPKR------DIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPY
        +++ +   TD   +     +P+  +L Q+Y +I      LPP+        + H I   P  +   ++PY      + EI K+V ++L +  I PS+SP 
Subjt:  VETDDTYKTDEKEEGDEANIPMIRFLLQQYIDIFTTPKGLPPKR------DIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPY

Query:  SSPVLLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSL
        SSPV+LV KKDG +R CVDYR LN+ATISD FP+P I+ LL  +  A +F+ LDL SGYHQI M+ +D  KTAF T  G YE+ VMPFGL NAP+TF   
Subjt:  SSPVLLVKKKDGGWRFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSL

Query:  MNQVFKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGL
        M   F+    R V V+ DDIL++S    EH KHL  V   L++  L    KKC FA  + ++LG+ I    +   + K  ++ ++P P  V + + FLG+
Subjt:  MNQVFKPFLRRCVLVFFDDILVYSRDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGL

Query:  TGYYRRFVKGYSNIATPL
          YYRRF+   S IA P+
Subjt:  TGYYRRFVKGYSNIATPL

Arabidopsis top hitse value%identityAlignment
ATMG00850.1 DNA/RNA polymerases superfamily protein4.9e-0755Show/hide
Query:  IQKGEIEKLVAEMLQDGVIRPSRSPYSSPVLLVKKKDGGW
        +++  ++  + EML+  +I+PS SPYSSPVLLV+KKDGGW
Subjt:  IQKGEIEKLVAEMLQDGVIRPSRSPYSSPVLLVKKKDGGW

ATMG00860.1 DNA/RNA polymerases superfamily protein1.2e-2456.38Show/hide
Query:  HLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQ--ISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYYRRFVKGYSNIATPLLNYYRK
        HLGMV  +   +Q YAN KKC F   +I YLGH+  IS  GV AD  K+ +MV WP P + TELRGFLGLTGYYRRFVK Y  I  PL    +K
Subjt:  HLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQ--ISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYYRRFVKGYSNIATPLLNYYRK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGTAGAAACTGATGATACTTACAAGACTGATGAGAAAGAGGAAGGAGATGAAGCGAATATCCCTATGATTCGGTTCTTACTACAACAGTACATAGATATTTTTAC
CACACCAAAGGGACTCCCTCCAAAGAGAGATATCGACCACAGGATATTGACACTACCCGACCAAAAGCCGATCAATGTAAGACCATATAAATATGGACATATCCAAAAAG
GGGAGATAGAGAAGTTAGTAGCTGAAATGCTGCAAGATGGTGTCATCCGCCCAAGCCGAAGCCCATATTCCAGCCCTGTTCTCCTGGTTAAGAAGAAAGATGGGGGGTGG
CGTTTTTGTGTTGATTACCGGAAGTTGAATCAAGCTACAATCTCAGATAAATTTCCTATCCCGGTGATTGAAGAACTATTAGATGAGTTATATGGAGCAGCAGTTTTCTC
TAAACTGGACCTCAAATCAGGTTACCACCAAATTAGAATGAAGGAAGAAGATATAGAGAAGACAGCGTTTCGCACCCATGAAGGCCATTATGAATTCCTAGTGATGCCTT
TCGGTCTCACCAACGCACCAGCAACGTTTCAATCACTGATGAATCAGGTTTTCAAGCCCTTCCTTAGACGCTGTGTTTTGGTATTTTTTGATGATATCTTAGTATATAGC
AGGGACATCACTGAACATGAGAAACACCTAGGGATGGTTTTTGCTGTGTTAAGGGATAATCAACTCTATGCCAATCACAAGAAATGTGTGTTTGCTCATTCTAAAATCCA
ATATTTGGGACACCAAATATCTAAGGCAGGGGTAGAGGCAGATGAAGATAAAATTAGAAGTATGGTAAATTGGCCAAGACCTTCAGATGTGACCGAATTAAGAGGATTTC
TGGGGCTGACTGGATATTACCGAAGGTTTGTTAAGGGTTACAGCAACATTGCAACCCCCTTACTAAACTATTACAGAAAAATGCTTTTAAATGGAATGAAGACGCTGAAA
CAGCATTCGTCAGGCTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAAGTAGAAACTGATGATACTTACAAGACTGATGAGAAAGAGGAAGGAGATGAAGCGAATATCCCTATGATTCGGTTCTTACTACAACAGTACATAGATATTTTTAC
CACACCAAAGGGACTCCCTCCAAAGAGAGATATCGACCACAGGATATTGACACTACCCGACCAAAAGCCGATCAATGTAAGACCATATAAATATGGACATATCCAAAAAG
GGGAGATAGAGAAGTTAGTAGCTGAAATGCTGCAAGATGGTGTCATCCGCCCAAGCCGAAGCCCATATTCCAGCCCTGTTCTCCTGGTTAAGAAGAAAGATGGGGGGTGG
CGTTTTTGTGTTGATTACCGGAAGTTGAATCAAGCTACAATCTCAGATAAATTTCCTATCCCGGTGATTGAAGAACTATTAGATGAGTTATATGGAGCAGCAGTTTTCTC
TAAACTGGACCTCAAATCAGGTTACCACCAAATTAGAATGAAGGAAGAAGATATAGAGAAGACAGCGTTTCGCACCCATGAAGGCCATTATGAATTCCTAGTGATGCCTT
TCGGTCTCACCAACGCACCAGCAACGTTTCAATCACTGATGAATCAGGTTTTCAAGCCCTTCCTTAGACGCTGTGTTTTGGTATTTTTTGATGATATCTTAGTATATAGC
AGGGACATCACTGAACATGAGAAACACCTAGGGATGGTTTTTGCTGTGTTAAGGGATAATCAACTCTATGCCAATCACAAGAAATGTGTGTTTGCTCATTCTAAAATCCA
ATATTTGGGACACCAAATATCTAAGGCAGGGGTAGAGGCAGATGAAGATAAAATTAGAAGTATGGTAAATTGGCCAAGACCTTCAGATGTGACCGAATTAAGAGGATTTC
TGGGGCTGACTGGATATTACCGAAGGTTTGTTAAGGGTTACAGCAACATTGCAACCCCCTTACTAAACTATTACAGAAAAATGCTTTTAAATGGAATGAAGACGCTGAAA
CAGCATTCGTCAGGCTGA
Protein sequenceShow/hide protein sequence
MEVETDDTYKTDEKEEGDEANIPMIRFLLQQYIDIFTTPKGLPPKRDIDHRILTLPDQKPINVRPYKYGHIQKGEIEKLVAEMLQDGVIRPSRSPYSSPVLLVKKKDGGW
RFCVDYRKLNQATISDKFPIPVIEELLDELYGAAVFSKLDLKSGYHQIRMKEEDIEKTAFRTHEGHYEFLVMPFGLTNAPATFQSLMNQVFKPFLRRCVLVFFDDILVYS
RDITEHEKHLGMVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYYRRFVKGYSNIATPLLNYYRKMLLNGMKTLK
QHSSG