; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc07g0190801 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc07g0190801
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionGag-pol polyprotein
Genome locationCMiso1.1chr07:10044054..10044803
RNA-Seq ExpressionCmc07g0190801
SyntenyCmc07g0190801
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0039208.1 gag-pol polyprotein [Cucumis melo var. makuwa]1.1e-9372.29Show/hide
Query:  MLQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVFGNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFN
        MLQEMARVMIH KNL LHFWA+A+NT CHIHNRI TRSGTT  LYELW GRK NVKYFHVF +TCYILA+REYHRKWDVK +QGIFL  SHNSRAYR+FN
Subjt:  MLQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVFGNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFN

Query:  IKSGIVMETINVVVNDFESTDNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKKNHPSSSIIGDPPAGIITQK
        IKSG VME INVVVNDFESTDNQINDEDDETVNIPVDNSLC VEVPKADALIDG+                                  GDP AGIITQK
Subjt:  IKSGIVMETINVVVNDFESTDNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKKNHPSSSIIGDPPAGIITQK

Query:  KEKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEELLQFMRNNV
        KE+VDYLKMIA+LCYT  I+PST+D+A KDE WIN MQEELL+F RNNV
Subjt:  KEKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEELLQFMRNNV

KAA0042995.1 gag-pol polyprotein [Cucumis melo var. makuwa]9.7e-8764.92Show/hide
Query:  LQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVFGNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNI
        LQEMARVMIH KNLPL F+AEAVNT CHIHNR+T R+GTT+TLYE W  RKLNVKYFHVFG+TCYILA+REYH+KWD + EQGIFL YS  SRAYRV+N 
Subjt:  LQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVFGNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNI

Query:  KSGIVMETINVVVNDFESTDNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKKNHPSSSIIGDPPAGIITQKK
        +S  VMETIN  +ND +S    +NDE+DET N+    +  +VE  KAD   DG G + +K S+E+I   LE +P AHV+KNHP+ SIIGDP AG+ T++K
Subjt:  KSGIVMETINVVVNDFESTDNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKKNHPSSSIIGDPPAGIITQKK

Query:  EKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEELLQFMRNNV
        +K+DYLKM+A+LCY   I+PST+D ALK+EYW+N MQEELLQF RNNV
Subjt:  EKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEELLQFMRNNV

KAA0060126.1 gag-pol polyprotein [Cucumis melo var. makuwa]7.4e-8769.29Show/hide
Query:  LQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVFGNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNI
        LQEMARVMIH KNLPL+FWAEAVNT CHIH+R+TTRSGTTVTLYELW GRK N+KYFH+FG+ CYILA+R+YHRKWDVK +Q IFL YS NSRAYRVFNI
Subjt:  LQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVFGNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNI

Query:  KSGIVMETINVVVNDFESTDNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKKNHPSSSIIGDPPAGIITQKK
        KSG VMETINVVVNDFES  NQ N E+DET   P   S    E+ K ++ +D +   S  I+ EVI +    VP AHVKKNHP SS+IGDP AGI T++K
Subjt:  KSGIVMETINVVVNDFESTDNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKKNHPSSSIIGDPPAGIITQKK

Query:  EKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEELL
        EKVDY KMIADLCY  AI+P++++ ALKDEYWIN MQ+ELL
Subjt:  EKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEELL

KAA0064117.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.6e-13296.37Show/hide
Query:  LQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVFGNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNI
        LQEMARVMIHPKNLPLHF AEA+NT CHIHNRITTRSG TVTLYELWNGRKLNVKYFHVFGNTCYILA+REYHRKWDVKLEQGIFLEYSHNS AYRVFNI
Subjt:  LQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVFGNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNI

Query:  KSGIVMETINVVVNDFESTDNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKKNHPSSSIIGDPPAGIITQKK
        KSGIVMETINVVVNDFESTDNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVP  HVKKNHPSSSIIGDPPA IITQKK
Subjt:  KSGIVMETINVVVNDFESTDNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKKNHPSSSIIGDPPAGIITQKK

Query:  EKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEELLQFMRNNV
        EKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEELLQFMRNNV
Subjt:  EKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEELLQFMRNNV

TYK11800.1 gag-pol polyprotein [Cucumis melo var. makuwa]2.2e-9976.61Show/hide
Query:  LQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVFGNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNI
        LQEMARVMIH K+LPL+FWAEAVNT CHIH+RITTRSGT VTLYELWNGRKLNVKYFHVFG+TCYILANREYHRKWDVK +QGIFL YS NSRAYRVFN 
Subjt:  LQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVFGNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNI

Query:  KSGIVMETINVVVNDFESTDNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKKNHPSSSIIGDPPAGIITQKK
         SG VMETIN +VNDFES   Q  DEDDET+NI +D+   S +V KAD   DG+ INS   SKEVIADN E V  AH++KNHP SSIIGDP A I T+KK
Subjt:  KSGIVMETINVVVNDFESTDNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKKNHPSSSIIGDPPAGIITQKK

Query:  EKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEELLQFMRNNV
        EKVDY KMIADLCYT  I+PST+ VALKDEYWIN MQEELLQF RNNV
Subjt:  EKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEELLQFMRNNV

TrEMBL top hitse value%identityAlignment
A0A5A7TNK7 Gag-pol polyprotein4.7e-8764.92Show/hide
Query:  LQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVFGNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNI
        LQEMARVMIH KNLPL F+AEAVNT CHIHNR+T R+GTT+TLYE W  RKLNVKYFHVFG+TCYILA+REYH+KWD + EQGIFL YS  SRAYRV+N 
Subjt:  LQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVFGNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNI

Query:  KSGIVMETINVVVNDFESTDNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKKNHPSSSIIGDPPAGIITQKK
        +S  VMETIN  +ND +S    +NDE+DET N+    +  +VE  KAD   DG G + +K S+E+I   LE +P AHV+KNHP+ SIIGDP AG+ T++K
Subjt:  KSGIVMETINVVVNDFESTDNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKKNHPSSSIIGDPPAGIITQKK

Query:  EKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEELLQFMRNNV
        +K+DYLKM+A+LCY   I+PST+D ALK+EYW+N MQEELLQF RNNV
Subjt:  EKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEELLQFMRNNV

A0A5A7V0X1 Gag-pol polyprotein3.6e-8769.29Show/hide
Query:  LQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVFGNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNI
        LQEMARVMIH KNLPL+FWAEAVNT CHIH+R+TTRSGTTVTLYELW GRK N+KYFH+FG+ CYILA+R+YHRKWDVK +Q IFL YS NSRAYRVFNI
Subjt:  LQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVFGNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNI

Query:  KSGIVMETINVVVNDFESTDNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKKNHPSSSIIGDPPAGIITQKK
        KSG VMETINVVVNDFES  NQ N E+DET   P   S    E+ K ++ +D +   S  I+ EVI +    VP AHVKKNHP SS+IGDP AGI T++K
Subjt:  KSGIVMETINVVVNDFESTDNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKKNHPSSSIIGDPPAGIITQKK

Query:  EKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEELL
        EKVDY KMIADLCY  AI+P++++ ALKDEYWIN MQ+ELL
Subjt:  EKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEELL

A0A5A7VAS8 Gag-pol polyprotein1.3e-13296.37Show/hide
Query:  LQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVFGNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNI
        LQEMARVMIHPKNLPLHF AEA+NT CHIHNRITTRSG TVTLYELWNGRKLNVKYFHVFGNTCYILA+REYHRKWDVKLEQGIFLEYSHNS AYRVFNI
Subjt:  LQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVFGNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNI

Query:  KSGIVMETINVVVNDFESTDNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKKNHPSSSIIGDPPAGIITQKK
        KSGIVMETINVVVNDFESTDNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVP  HVKKNHPSSSIIGDPPA IITQKK
Subjt:  KSGIVMETINVVVNDFESTDNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKKNHPSSSIIGDPPAGIITQKK

Query:  EKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEELLQFMRNNV
        EKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEELLQFMRNNV
Subjt:  EKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEELLQFMRNNV

A0A5D3CK56 Gag-pol polyprotein1.1e-9976.61Show/hide
Query:  LQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVFGNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNI
        LQEMARVMIH K+LPL+FWAEAVNT CHIH+RITTRSGT VTLYELWNGRKLNVKYFHVFG+TCYILANREYHRKWDVK +QGIFL YS NSRAYRVFN 
Subjt:  LQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVFGNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNI

Query:  KSGIVMETINVVVNDFESTDNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKKNHPSSSIIGDPPAGIITQKK
         SG VMETIN +VNDFES   Q  DEDDET+NI +D+   S +V KAD   DG+ INS   SKEVIADN E V  AH++KNHP SSIIGDP A I T+KK
Subjt:  KSGIVMETINVVVNDFESTDNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKKNHPSSSIIGDPPAGIITQKK

Query:  EKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEELLQFMRNNV
        EKVDY KMIADLCYT  I+PST+ VALKDEYWIN MQEELLQF RNNV
Subjt:  EKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEELLQFMRNNV

A0A5D3D4K0 Gag-pol polyprotein5.2e-9472.29Show/hide
Query:  MLQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVFGNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFN
        MLQEMARVMIH KNL LHFWA+A+NT CHIHNRI TRSGTT  LYELW GRK NVKYFHVF +TCYILA+REYHRKWDVK +QGIFL  SHNSRAYR+FN
Subjt:  MLQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVFGNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFN

Query:  IKSGIVMETINVVVNDFESTDNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKKNHPSSSIIGDPPAGIITQK
        IKSG VME INVVVNDFESTDNQINDEDDETVNIPVDNSLC VEVPKADALIDG+                                  GDP AGIITQK
Subjt:  IKSGIVMETINVVVNDFESTDNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKKNHPSSSIIGDPPAGIITQK

Query:  KEKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEELLQFMRNNV
        KE+VDYLKMIA+LCYT  I+PST+D+A KDE WIN MQEELL+F RNNV
Subjt:  KEKVDYLKMIADLCYTFAIKPSTIDVALKDEYWINVMQEELLQFMRNNV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTCAAGAAATGGCTCGAGTTATGATACATCCCAAAAATTTACCTCTGCATTTTTGGGCAGAAGCTGTTAACACAACGTGTCACATTCACAACAGGATTACT
ACTCGATCTGGAACGACTGTCACGTTATATGAACTTTGGAATGGAAGAAAGTTGAACGTAAAGTATTTTCATGTTTTTGGAAATACTTGTTATATTCTAGCTAAT
AGAGAATATCATCGAAAGTGGGATGTGAAATTAGAACAAGGAATCTTTCTTGAATATTCTCATAATAGTCGTGCTTATAGAGTCTTTAATATTAAATCTGGTATA
GTTATGGAAACGATCAATGTTGTGGTAAATGATTTTGAATCAACTGACAATCAAATTAATGATGAGGATGATGAGACTGTAAATATACCTGTGGATAATTCACTG
TGTTCTGTGGAGGTACCTAAAGCTGATGCTTTAATAGATGGTTCTGGTATAAACTCAGAAAAGATATCTAAGGAAGTTATAGCTGATAATCTTGAGTTTGTTCCT
TTTGCACATGTGAAGAAGAATCATCCATCAAGTTCTATAATAGGTGATCCTCCAGCTGGAATTATCACTCAAAAGAAAGAGAAAGTAGATTACTTGAAGATGATT
GCTGACTTATGTTATACATTTGCCATCAAACCCTCAACTATTGACGTTGCTCTTAAAGATGAATATTGGATTAACGTAATGCAAGAAGAACTACTCCAATTCATG
AGAAACAATGTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTTCAAGAAATGGCTCGAGTTATGATACATCCCAAAAATTTACCTCTGCATTTTTGGGCAGAAGCTGTTAACACAACGTGTCACATTCACAACAGGATTACT
ACTCGATCTGGAACGACTGTCACGTTATATGAACTTTGGAATGGAAGAAAGTTGAACGTAAAGTATTTTCATGTTTTTGGAAATACTTGTTATATTCTAGCTAAT
AGAGAATATCATCGAAAGTGGGATGTGAAATTAGAACAAGGAATCTTTCTTGAATATTCTCATAATAGTCGTGCTTATAGAGTCTTTAATATTAAATCTGGTATA
GTTATGGAAACGATCAATGTTGTGGTAAATGATTTTGAATCAACTGACAATCAAATTAATGATGAGGATGATGAGACTGTAAATATACCTGTGGATAATTCACTG
TGTTCTGTGGAGGTACCTAAAGCTGATGCTTTAATAGATGGTTCTGGTATAAACTCAGAAAAGATATCTAAGGAAGTTATAGCTGATAATCTTGAGTTTGTTCCT
TTTGCACATGTGAAGAAGAATCATCCATCAAGTTCTATAATAGGTGATCCTCCAGCTGGAATTATCACTCAAAAGAAAGAGAAAGTAGATTACTTGAAGATGATT
GCTGACTTATGTTATACATTTGCCATCAAACCCTCAACTATTGACGTTGCTCTTAAAGATGAATATTGGATTAACGTAATGCAAGAAGAACTACTCCAATTCATG
AGAAACAATGTCTAG
Protein sequenceShow/hide protein sequence
MLQEMARVMIHPKNLPLHFWAEAVNTTCHIHNRITTRSGTTVTLYELWNGRKLNVKYFHVFGNTCYILANREYHRKWDVKLEQGIFLEYSHNSRAYRVFNIKSGI
VMETINVVVNDFESTDNQINDEDDETVNIPVDNSLCSVEVPKADALIDGSGINSEKISKEVIADNLEFVPFAHVKKNHPSSSIIGDPPAGIITQKKEKVDYLKMI
ADLCYTFAIKPSTIDVALKDEYWINVMQEELLQFMRNNV