CuGenDBv2

Gene ID	Cmc07g0190921
Organism	Cucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Genome location	CMiso1.1chr07:10315762..10316550
RNA-Seq Expression	Cmc07g0190921
Synteny	Cmc07g0190921
Gene Ontology terms	GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	IPR025314 - Domain of unknown function DUF4219

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0026102.1 putative copia-type polyprotein [Cucumis melo var. makuwa]

2.2e-118

90.08

Show/hide

Query:  MTNNNLVPFQVPQLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDTALNQAQGKALQNTRKKDQKALTIIHQAINDNNLEKISGATTAYQAWKILE
        M NNNLVPFQVP+LTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESD ALNQAQ +ALQNTRKKDQKALTIIHQAI+DNN EKISGATTAYQAW+ILE
Subjt:  MTNNNLVPFQVPQLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDTALNQAQGKALQNTRKKDQKALTIIHQAINDNNLEKISGATTAYQAWKILE

Query:  NTYKGVDRVKKVRLQKLKGDYESLHMKESESVSDYTSRLLALVNEMKRFGETISDEQVVEKILRSLGEKFIFIVVAIEESKDLSTMSIDQLMGSLQAHEE
        NTYKGVDRVKKVRLQKL+GDYESLHMKESESVSDYTSRLLA+VNEMKRFGETISDEQVVEKILRSL EKF FIVVAIEESKDLSTMSIDQLMGSLQAHEE
Subjt:  NTYKGVDRVKKVRLQKLKGDYESLHMKESESVSDYTSRLLALVNEMKRFGETISDEQVVEKILRSLGEKFIFIVVAIEESKDLSTMSIDQLMGSLQAHEE

Query:  KLLKKNKQMTEQLFQSKLKLKDKEDSLEREIEVEDMMVIVDVVISKIKVEEATVKENLMRVI
        KLLKKNKQMTEQLFQSKLKLKDKE SLE+          VDVVISKI+V+EATVKENLMRVI
Subjt:  KLLKKNKQMTEQLFQSKLKLKDKEDSLEREIEVEDMMVIVDVVISKIKVEEATVKENLMRVI

KAA0062149.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

1.9e-109

93.01

Show/hide

Query:  MTNNNLVPFQVPQLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDTALNQAQGKALQNTRKKDQKALTIIHQAINDNNLEKISGATTAYQAWKILE
        M NNNLVPFQVP+LTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESD ALNQAQ +ALQNTRKK QKALTIIHQAI+DNN EKISGATTAYQAW+ILE
Subjt:  MTNNNLVPFQVPQLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDTALNQAQGKALQNTRKKDQKALTIIHQAINDNNLEKISGATTAYQAWKILE

Query:  NTYKGVDRVKKVRLQKLKGDYESLHMKESESVSDYTSRLLALVNEMKRFGETISDEQVVEKILRSLGEKFIFIVVAIEESKDLSTMSIDQLMGSLQAHEE
        NTYKGVDRVKKVRLQKL+GDYESLHMKESESVSDYTSRLLA+VNEMKRFGETISDEQVVEKILRSL EKF FIVVAIEESKDLSTMSIDQLMGSLQAHEE
Subjt:  NTYKGVDRVKKVRLQKLKGDYESLHMKESESVSDYTSRLLALVNEMKRFGETISDEQVVEKILRSLGEKFIFIVVAIEESKDLSTMSIDQLMGSLQAHEE

Query:  KLLKKNKQMTEQLFQSKLKLKDKEDSLER
        KLLKKNKQMTE+LFQSKLKLKDKE SLE+
Subjt:  KLLKKNKQMTEQLFQSKLKLKDKEDSLER

KAA0062322.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

5.9e-111

93.89

Show/hide

Query:  MTNNNLVPFQVPQLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDTALNQAQGKALQNTRKKDQKALTIIHQAINDNNLEKISGATTAYQAWKILE
        M NNNLVPFQVP+LTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESD ALNQAQ +ALQNTRKKDQKALTIIHQAI+DNN EKISGATTAYQAW+ILE
Subjt:  MTNNNLVPFQVPQLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDTALNQAQGKALQNTRKKDQKALTIIHQAINDNNLEKISGATTAYQAWKILE

Query:  NTYKGVDRVKKVRLQKLKGDYESLHMKESESVSDYTSRLLALVNEMKRFGETISDEQVVEKILRSLGEKFIFIVVAIEESKDLSTMSIDQLMGSLQAHEE
        NTYKGVDRVKKVRLQKL+GDYESLHMKESESVSDYTSRLLA+VNEMKRFGETISDEQVVEKILRSL EKF FIVVAIEESKDLSTMSIDQLMGSLQAHEE
Subjt:  NTYKGVDRVKKVRLQKLKGDYESLHMKESESVSDYTSRLLALVNEMKRFGETISDEQVVEKILRSLGEKFIFIVVAIEESKDLSTMSIDQLMGSLQAHEE

Query:  KLLKKNKQMTEQLFQSKLKLKDKEDSLER
        KLLKKNKQMTEQLFQSKLKLKDKE SLE+
Subjt:  KLLKKNKQMTEQLFQSKLKLKDKEDSLER

TYK13816.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]

5.9e-111

93.89

Show/hide

Query:  MTNNNLVPFQVPQLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDTALNQAQGKALQNTRKKDQKALTIIHQAINDNNLEKISGATTAYQAWKILE
        M NNNLVPFQVP+LTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESD ALNQAQ +ALQNTRKKDQKALTIIHQAI+DNN EKISGATTAYQAW+ILE
Subjt:  MTNNNLVPFQVPQLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDTALNQAQGKALQNTRKKDQKALTIIHQAINDNNLEKISGATTAYQAWKILE

Query:  NTYKGVDRVKKVRLQKLKGDYESLHMKESESVSDYTSRLLALVNEMKRFGETISDEQVVEKILRSLGEKFIFIVVAIEESKDLSTMSIDQLMGSLQAHEE
        NTYKGVDRVKKVRLQKL+GDYESLHMKESESVSDYTSRLLA+VNEMKRFGETISDEQVVEKILRSL EKF FIVVAIEESKDLSTMSIDQLMGSLQAHEE
Subjt:  NTYKGVDRVKKVRLQKLKGDYESLHMKESESVSDYTSRLLALVNEMKRFGETISDEQVVEKILRSLGEKFIFIVVAIEESKDLSTMSIDQLMGSLQAHEE

Query:  KLLKKNKQMTEQLFQSKLKLKDKEDSLER
        KLLKKNKQMTEQLFQSKLKLKDKE SLE+
Subjt:  KLLKKNKQMTEQLFQSKLKLKDKEDSLER

XP_008456214.1 PREDICTED: uncharacterized protein LOC103496217, partial [Cucumis melo]

1.2e-108

91.7

Show/hide

Query:  MTNNNLVPFQVPQLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDTALNQAQGKALQNTRKKDQKALTIIHQAINDNNLEKISGATTAYQAWKILE
        M NNNLVP QVP+LTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESD +LNQAQ +ALQNTRKKDQKALTIIHQAI+DNN EKISGATTAYQAWKILE
Subjt:  MTNNNLVPFQVPQLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDTALNQAQGKALQNTRKKDQKALTIIHQAINDNNLEKISGATTAYQAWKILE

Query:  NTYKGVDRVKKVRLQKLKGDYESLHMKESESVSDYTSRLLALVNEMKRFGETISDEQVVEKILRSLGEKFIFIVVAIEESKDLSTMSIDQLMGSLQAHEE
        NTYKGV R+KKVRLQKL+GDYESLHMKESESVSDYTSRLLA+VNEMKRFGETISDEQVVEKILRSL EKF FIVVAIEESKDLSTMS DQ MGSLQAHEE
Subjt:  NTYKGVDRVKKVRLQKLKGDYESLHMKESESVSDYTSRLLALVNEMKRFGETISDEQVVEKILRSLGEKFIFIVVAIEESKDLSTMSIDQLMGSLQAHEE

Query:  KLLKKNKQMTEQLFQSKLKLKDKEDSLER
        KLLKKNKQMTEQLFQSKLKLKDKED+LE+
Subjt:  KLLKKNKQMTEQLFQSKLKLKDKEDSLER

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C2T7 uncharacterized protein LOC103496217

6.0e-109

91.7

Show/hide

Query:  MTNNNLVPFQVPQLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDTALNQAQGKALQNTRKKDQKALTIIHQAINDNNLEKISGATTAYQAWKILE
        M NNNLVP QVP+LTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESD +LNQAQ +ALQNTRKKDQKALTIIHQAI+DNN EKISGATTAYQAWKILE
Subjt:  MTNNNLVPFQVPQLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDTALNQAQGKALQNTRKKDQKALTIIHQAINDNNLEKISGATTAYQAWKILE

Query:  NTYKGVDRVKKVRLQKLKGDYESLHMKESESVSDYTSRLLALVNEMKRFGETISDEQVVEKILRSLGEKFIFIVVAIEESKDLSTMSIDQLMGSLQAHEE
        NTYKGV R+KKVRLQKL+GDYESLHMKESESVSDYTSRLLA+VNEMKRFGETISDEQVVEKILRSL EKF FIVVAIEESKDLSTMS DQ MGSLQAHEE
Subjt:  NTYKGVDRVKKVRLQKLKGDYESLHMKESESVSDYTSRLLALVNEMKRFGETISDEQVVEKILRSLGEKFIFIVVAIEESKDLSTMSIDQLMGSLQAHEE

Query:  KLLKKNKQMTEQLFQSKLKLKDKEDSLER
        KLLKKNKQMTEQLFQSKLKLKDKED+LE+
Subjt:  KLLKKNKQMTEQLFQSKLKLKDKEDSLER

A0A5A7SLT1 Putative copia-type polyprotein

1.1e-118

90.08

Show/hide

Query:  MTNNNLVPFQVPQLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDTALNQAQGKALQNTRKKDQKALTIIHQAINDNNLEKISGATTAYQAWKILE
        M NNNLVPFQVP+LTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESD ALNQAQ +ALQNTRKKDQKALTIIHQAI+DNN EKISGATTAYQAW+ILE
Subjt:  MTNNNLVPFQVPQLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDTALNQAQGKALQNTRKKDQKALTIIHQAINDNNLEKISGATTAYQAWKILE

Query:  NTYKGVDRVKKVRLQKLKGDYESLHMKESESVSDYTSRLLALVNEMKRFGETISDEQVVEKILRSLGEKFIFIVVAIEESKDLSTMSIDQLMGSLQAHEE
        NTYKGVDRVKKVRLQKL+GDYESLHMKESESVSDYTSRLLA+VNEMKRFGETISDEQVVEKILRSL EKF FIVVAIEESKDLSTMSIDQLMGSLQAHEE
Subjt:  NTYKGVDRVKKVRLQKLKGDYESLHMKESESVSDYTSRLLALVNEMKRFGETISDEQVVEKILRSLGEKFIFIVVAIEESKDLSTMSIDQLMGSLQAHEE

Query:  KLLKKNKQMTEQLFQSKLKLKDKEDSLEREIEVEDMMVIVDVVISKIKVEEATVKENLMRVI
        KLLKKNKQMTEQLFQSKLKLKDKE SLE+          VDVVISKI+V+EATVKENLMRVI
Subjt:  KLLKKNKQMTEQLFQSKLKLKDKEDSLEREIEVEDMMVIVDVVISKIKVEEATVKENLMRVI

A0A5A7V277 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.9e-111

93.89

Show/hide

Query:  MTNNNLVPFQVPQLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDTALNQAQGKALQNTRKKDQKALTIIHQAINDNNLEKISGATTAYQAWKILE
        M NNNLVPFQVP+LTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESD ALNQAQ +ALQNTRKKDQKALTIIHQAI+DNN EKISGATTAYQAW+ILE
Subjt:  MTNNNLVPFQVPQLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDTALNQAQGKALQNTRKKDQKALTIIHQAINDNNLEKISGATTAYQAWKILE

Query:  NTYKGVDRVKKVRLQKLKGDYESLHMKESESVSDYTSRLLALVNEMKRFGETISDEQVVEKILRSLGEKFIFIVVAIEESKDLSTMSIDQLMGSLQAHEE
        NTYKGVDRVKKVRLQKL+GDYESLHMKESESVSDYTSRLLA+VNEMKRFGETISDEQVVEKILRSL EKF FIVVAIEESKDLSTMSIDQLMGSLQAHEE
Subjt:  NTYKGVDRVKKVRLQKLKGDYESLHMKESESVSDYTSRLLALVNEMKRFGETISDEQVVEKILRSLGEKFIFIVVAIEESKDLSTMSIDQLMGSLQAHEE

Query:  KLLKKNKQMTEQLFQSKLKLKDKEDSLER
        KLLKKNKQMTEQLFQSKLKLKDKE SLE+
Subjt:  KLLKKNKQMTEQLFQSKLKLKDKEDSLER

A0A5A7V8Y7 Retrovirus-related Pol polyprotein from transposon TNT 1-94

9.2e-110

93.01

Show/hide

Query:  MTNNNLVPFQVPQLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDTALNQAQGKALQNTRKKDQKALTIIHQAINDNNLEKISGATTAYQAWKILE
        M NNNLVPFQVP+LTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESD ALNQAQ +ALQNTRKK QKALTIIHQAI+DNN EKISGATTAYQAW+ILE
Subjt:  MTNNNLVPFQVPQLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDTALNQAQGKALQNTRKKDQKALTIIHQAINDNNLEKISGATTAYQAWKILE

Query:  NTYKGVDRVKKVRLQKLKGDYESLHMKESESVSDYTSRLLALVNEMKRFGETISDEQVVEKILRSLGEKFIFIVVAIEESKDLSTMSIDQLMGSLQAHEE
        NTYKGVDRVKKVRLQKL+GDYESLHMKESESVSDYTSRLLA+VNEMKRFGETISDEQVVEKILRSL EKF FIVVAIEESKDLSTMSIDQLMGSLQAHEE
Subjt:  NTYKGVDRVKKVRLQKLKGDYESLHMKESESVSDYTSRLLALVNEMKRFGETISDEQVVEKILRSLGEKFIFIVVAIEESKDLSTMSIDQLMGSLQAHEE

Query:  KLLKKNKQMTEQLFQSKLKLKDKEDSLER
        KLLKKNKQMTE+LFQSKLKLKDKE SLE+
Subjt:  KLLKKNKQMTEQLFQSKLKLKDKEDSLER

A0A5D3CTU3 Retrovirus-related Pol polyprotein from transposon TNT 1-94

2.9e-111

93.89

Show/hide

Query:  MTNNNLVPFQVPQLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDTALNQAQGKALQNTRKKDQKALTIIHQAINDNNLEKISGATTAYQAWKILE
        M NNNLVPFQVP+LTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESD ALNQAQ +ALQNTRKKDQKALTIIHQAI+DNN EKISGATTAYQAW+ILE
Subjt:  MTNNNLVPFQVPQLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDTALNQAQGKALQNTRKKDQKALTIIHQAINDNNLEKISGATTAYQAWKILE

Query:  NTYKGVDRVKKVRLQKLKGDYESLHMKESESVSDYTSRLLALVNEMKRFGETISDEQVVEKILRSLGEKFIFIVVAIEESKDLSTMSIDQLMGSLQAHEE
        NTYKGVDRVKKVRLQKL+GDYESLHMKESESVSDYTSRLLA+VNEMKRFGETISDEQVVEKILRSL EKF FIVVAIEESKDLSTMSIDQLMGSLQAHEE
Subjt:  NTYKGVDRVKKVRLQKLKGDYESLHMKESESVSDYTSRLLALVNEMKRFGETISDEQVVEKILRSLGEKFIFIVVAIEESKDLSTMSIDQLMGSLQAHEE

Query:  KLLKKNKQMTEQLFQSKLKLKDKEDSLER
        KLLKKNKQMTEQLFQSKLKLKDKE SLE+
Subjt:  KLLKKNKQMTEQLFQSKLKLKDKEDSLER

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G48720.1 unknown protein

4.2e-22

51.09

Show/hide

Query:  MTNNNLVPFQVPQLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDTALNQAQGKALQNTRKKDQKALTIIHQAINDNNLEKISGATTA
        M +NN VPFQVP LTK NY +W +RMKA+LG+ DVW+IV  G+ EPE++ +L+Q Q   L+++RK+D+KAL +I+Q ++++  EK+  AT+A
Subjt:  MTNNNLVPFQVPQLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDTALNQAQGKALQNTRKKDQKALTIIHQAINDNNLEKISGATTA

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGACAAACAACAATTTAGTTCCATTCCAAGTACCTCAACTTACGAAAGAAAATTATAGTAGTTGGTGTATTCGAATGAAAGCTCTACTTGGTTCACAAGATGTG
TGGGACATTGTTAGTAATGGTTATGAAGAACCAGAAAGTGATACAGCTTTGAATCAAGCTCAAGGAAAAGCTTTACAAAATACAAGAAAAAAAGATCAAAAGGCT
CTTACCATCATTCATCAAGCCATTAATGATAACAATTTGGAGAAAATTTCTGGAGCAACTACTGCATATCAAGCATGGAAAATTTTGGAGAATACGTATAAAGGA
GTAGATCGAGTCAAGAAGGTTCGCCTTCAAAAATTGAAAGGTGATTATGAATCACTACATATGAAGGAGTCTGAATCAGTTTCAGATTATACTTCAAGATTGCTA
GCATTAGTAAATGAAATGAAAAGATTTGGTGAGACAATAAGCGATGAGCAAGTAGTAGAAAAGATACTTCGCTCATTGGGTGAAAAATTTATTTTCATCGTGGTA
GCTATCGAAGAATCAAAGGATTTGAGTACAATGTCCATTGATCAACTTATGGGCTCTTTACAAGCCCATGAAGAGAAGCTTCTTAAGAAGAACAAGCAGATGACT
GAGCAACTTTTTCAGTCAAAGTTGAAATTAAAAGACAAGGAAGACAGCCTAGAAAGGGAAATTGAGGTCGAGGACATGATGGTAATCGTGGACGTGGTGATTTCA
AAGATCAAGGTCGAGGAAGCTACGGTCAAAGAAAATTTGATGAGAGTAATTTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MTNNNLVPFQVPQLTKENYSSWCIRMKALLGSQDVWDIVSNGYEEPESDTALNQAQGKALQNTRKKDQKALTIIHQAINDNNLEKISGATTAYQAWKILENTYKG
VDRVKKVRLQKLKGDYESLHMKESESVSDYTSRLLALVNEMKRFGETISDEQVVEKILRSLGEKFIFIVVAIEESKDLSTMSIDQLMGSLQAHEEKLLKKNKQMT
EQLFQSKLKLKDKEDSLEREIEVEDMMVIVDVVISKIKVEEATVKENLMRVI

Cmc07g0190921 (gene) of Melon (Charmono) v1.1 genome