; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Cmc07g0192111 (gene) of Melon (Charmono) v1.1 genome

Gene IDCmc07g0192111
OrganismCucumis melo var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionPol protein
Genome locationCMiso1.1chr07:12538998..12539892
RNA-Seq ExpressionCmc07g0192111
SyntenyCmc07g0192111
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0006508 - proteolysis (biological process)
GO:0015074 - DNA integration (biological process)
GO:0016020 - membrane (cellular component)
GO:0043227 - membrane-bounded organelle (cellular component)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
GO:0004190 - aspartic-type endopeptidase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
AAO45752.1 pol protein [Cucumis melo subsp. melo]2.4e-13991.14Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKS HF+ GKSTYTASKW QLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER

Query:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR
        LN+VLEDMLRACALEFPGSWDSHLHLMEFAYNNS+QATIGMA FEALY +CCRS +CW EVGEQRLMGPELVQSTNEA+QKI+SRM T QSRQKSYADVR
Subjt:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR

Query:  RKDLEFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAVHDVFHVSMLR
        RKDLEF+VGDKVFLKVAPMKGVLRFE RGKLSPRFVG FEILERI PVAYRLALPPSLS VHDVFHVSMLR
Subjt:  RKDLEFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAVHDVFHVSMLR

KAA0041424.1 pol protein [Cucumis melo var. makuwa]7.5e-14191.88Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKS HF+ GKSTYTASKW QLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER

Query:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR
        LN+VLEDMLRACALEFPGSWDSHLHLMEFAYNNS+QATIGMA FEALY KCCRS +CWDEVGEQRLMGPELVQSTNEA+QKI+SRM T QSRQKSYADVR
Subjt:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR

Query:  RKDLEFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAVHDVFHVSMLR
        RKDLEF+VGDKVFLKVAPMKGVLRFE RGKLSPRFVG FEILER+ PVAYRLALPPSLSAVHDVFHVSMLR
Subjt:  RKDLEFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAVHDVFHVSMLR

KAA0043401.1 pol protein [Cucumis melo var. makuwa]1.4e-13990.77Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKS HF+ GKSTYTASKW QLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER

Query:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR
        LN+VLEDMLRACALEFPGSWDSHLHLMEFAYNNS+QATIGMA FEALY +CCRS +CW EVGEQRLMGPELVQSTNEA+QKI+SRM T QSRQKSYADVR
Subjt:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR

Query:  RKDLEFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAVHDVFHVSMLR
        RKDLEF++GDKVFLKVAPMKGVLRFE RGKLSPRFVG FEILERI PVAYRLALPPSLSAVHDVFH+SMLR
Subjt:  RKDLEFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAVHDVFHVSMLR

KAA0043669.1 pol protein [Cucumis melo var. makuwa]2.4e-13991.14Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKS HF+ GKSTYTASKW QLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER

Query:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR
        LN+VLEDMLRACALEFP SWDSHLHLMEFAYNNS+QATIGMA FEALY +CCRS +CWDEVGEQRLMGPELVQSTNEA+QKI+SRM T QSRQKSYADVR
Subjt:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR

Query:  RKDLEFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAVHDVFHVSMLR
        RKDLEF+VGDKVFLKVAPMKGVLRFE RGKLSPRFVG FEILERI PVAYRLALPPSLS VHDVFHVSMLR
Subjt:  RKDLEFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAVHDVFHVSMLR

KAA0046147.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]2.7e-143100Show/hide
Query:  VIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTERLNKVLEDMLRACALE
        VIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTERLNKVLEDMLRACALE
Subjt:  VIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTERLNKVLEDMLRACALE

Query:  FPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVRRKDLEFDVGDKVFLK
        FPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVRRKDLEFDVGDKVFLK
Subjt:  FPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVRRKDLEFDVGDKVFLK

Query:  VAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAVHDVFHVSMLR
        VAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAVHDVFHVSMLR
Subjt:  VAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAVHDVFHVSMLR

TrEMBL top hitse value%identityAlignment
A0A5A7TDB5 Pol protein3.6e-14191.88Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKS HF+ GKSTYTASKW QLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER

Query:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR
        LN+VLEDMLRACALEFPGSWDSHLHLMEFAYNNS+QATIGMA FEALY KCCRS +CWDEVGEQRLMGPELVQSTNEA+QKI+SRM T QSRQKSYADVR
Subjt:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR

Query:  RKDLEFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAVHDVFHVSMLR
        RKDLEF+VGDKVFLKVAPMKGVLRFE RGKLSPRFVG FEILER+ PVAYRLALPPSLSAVHDVFHVSMLR
Subjt:  RKDLEFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAVHDVFHVSMLR

A0A5A7TPA9 Pol protein6.8e-14090.77Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKS HF+ GKSTYTASKW QLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER

Query:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR
        LN+VLEDMLRACALEFPGSWDSHLHLMEFAYNNS+QATIGMA FEALY +CCRS +CW EVGEQRLMGPELVQSTNEA+QKI+SRM T QSRQKSYADVR
Subjt:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR

Query:  RKDLEFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAVHDVFHVSMLR
        RKDLEF++GDKVFLKVAPMKGVLRFE RGKLSPRFVG FEILERI PVAYRLALPPSLSAVHDVFH+SMLR
Subjt:  RKDLEFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAVHDVFHVSMLR

A0A5A7TR61 Pol protein1.2e-13991.14Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER
        MDFITGLPRTLRGFTVIWVVVDRLTKS HF+ GKSTYTASKW QLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER

Query:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR
        LN+VLEDMLRACALEFP SWDSHLHLMEFAYNNS+QATIGMA FEALY +CCRS +CWDEVGEQRLMGPELVQSTNEA+QKI+SRM T QSRQKSYADVR
Subjt:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR

Query:  RKDLEFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAVHDVFHVSMLR
        RKDLEF+VGDKVFLKVAPMKGVLRFE RGKLSPRFVG FEILERI PVAYRLALPPSLS VHDVFHVSMLR
Subjt:  RKDLEFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAVHDVFHVSMLR

A0A5A7TW79 Ty3-gypsy retrotransposon protein1.3e-143100Show/hide
Query:  VIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTERLNKVLEDMLRACALE
        VIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTERLNKVLEDMLRACALE
Subjt:  VIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTERLNKVLEDMLRACALE

Query:  FPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVRRKDLEFDVGDKVFLK
        FPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVRRKDLEFDVGDKVFLK
Subjt:  FPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVRRKDLEFDVGDKVFLK

Query:  VAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAVHDVFHVSMLR
        VAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAVHDVFHVSMLR
Subjt:  VAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAVHDVFHVSMLR

A0A5A7UP94 Pol protein1.2e-13991.14Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER
        MDFI GLPRTLRGFTVIWVVVDRLTKS HF+ GKSTYT SKW QLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQ AMGTRLDFST FHPQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER

Query:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR
        LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNS+QATIGMA FEALYDKCCRS ICW EVGEQRLMGPELVQSTNEA+QKI+SRM T QSRQKSYADVR
Subjt:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR

Query:  RKDLEFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAVHDVFHVSMLR
        RKDLEF+VGDKVFLKVAPM+GV+RFE RGKLSPRFVG FEILERI PVAYRLALPPSLS VHDVFHVSMLR
Subjt:  RKDLEFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAVHDVFHVSMLR

SwissProt top hitse value%identityAlignment
P0CT34 Transposon Tf2-1 polyprotein1.5e-3031.99Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER
        MDFIT LP +  G+  ++VVVDR +K    +    + TA +  +++   ++   G P  I++D D  FTS+ WK         + FS  + PQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER

Query:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR
         N+ +E +LR      P +W  H+ L++ +YNN+  +   M  FE ++      S    E+        E  Q T +  Q +K  + T   + K Y D++
Subjt:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR

Query:  RKDL-EFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAV-HDVFHVSML
         +++ EF  GD V +K     G L      KL+P F G F +L++  P  Y L LP S+  +    FHVS L
Subjt:  RKDL-EFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAV-HDVFHVSML

P0CT35 Transposon Tf2-2 polyprotein1.5e-3031.99Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER
        MDFIT LP +  G+  ++VVVDR +K    +    + TA +  +++   ++   G P  I++D D  FTS+ WK         + FS  + PQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER

Query:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR
         N+ +E +LR      P +W  H+ L++ +YNN+  +   M  FE ++      S    E+        E  Q T +  Q +K  + T   + K Y D++
Subjt:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR

Query:  RKDL-EFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAV-HDVFHVSML
         +++ EF  GD V +K     G L      KL+P F G F +L++  P  Y L LP S+  +    FHVS L
Subjt:  RKDL-EFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAV-HDVFHVSML

P0CT36 Transposon Tf2-3 polyprotein1.5e-3031.99Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER
        MDFIT LP +  G+  ++VVVDR +K    +    + TA +  +++   ++   G P  I++D D  FTS+ WK         + FS  + PQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER

Query:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR
         N+ +E +LR      P +W  H+ L++ +YNN+  +   M  FE ++      S    E+        E  Q T +  Q +K  + T   + K Y D++
Subjt:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR

Query:  RKDL-EFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAV-HDVFHVSML
         +++ EF  GD V +K     G L      KL+P F G F +L++  P  Y L LP S+  +    FHVS L
Subjt:  RKDL-EFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAV-HDVFHVSML

P0CT41 Transposon Tf2-12 polyprotein1.5e-3031.99Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER
        MDFIT LP +  G+  ++VVVDR +K    +    + TA +  +++   ++   G P  I++D D  FTS+ WK         + FS  + PQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER

Query:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR
         N+ +E +LR      P +W  H+ L++ +YNN+  +   M  FE ++      S    E+        E  Q T +  Q +K  + T   + K Y D++
Subjt:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR

Query:  RKDL-EFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAV-HDVFHVSML
         +++ EF  GD V +K     G L      KL+P F G F +L++  P  Y L LP S+  +    FHVS L
Subjt:  RKDL-EFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAV-HDVFHVSML

Q9UR07 Transposon Tf2-11 polyprotein1.5e-3031.99Show/hide
Query:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER
        MDFIT LP +  G+  ++VVVDR +K    +    + TA +  +++   ++   G P  I++D D  FTS+ WK         + FS  + PQ DGQTER
Subjt:  MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTER

Query:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR
         N+ +E +LR      P +W  H+ L++ +YNN+  +   M  FE ++      S    E+        E  Q T +  Q +K  + T   + K Y D++
Subjt:  LNKVLEDMLRACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVR

Query:  RKDL-EFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAV-HDVFHVSML
         +++ EF  GD V +K     G L      KL+P F G F +L++  P  Y L LP S+  +    FHVS L
Subjt:  RKDL-EFDVGDKVFLKVAPMKGVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAV-HDVFHVSML

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATTTCATTACAGGACTGCCTAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTTGTTGACAGGCTTACCAAATCACCGCATTTCATTCTGGGAAAATCCACTTA
TACTGCTAGTAAGTGGACACAGTTGTACATGTCTGAGATAGTGAGATTGCATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTTACCTCCAAGTTCTGGA
AAGGTTTACAGGCTGCTATGGGCACGAGGTTAGACTTTAGTACAGGTTTCCACCCACAGGCTGATGGTCAGACTGAGCGCCTGAACAAAGTTTTAGAGGATATGTTGCGA
GCTTGTGCATTAGAATTCCCAGGTAGTTGGGATTCTCACTTGCATTTGATGGAATTTGCTTATAATAATAGTTTTCAGGCTACCATTGGCATGGCACTGTTTGAGGCCTT
GTACGACAAATGTTGTAGATCCTCTATTTGCTGGGATGAGGTTGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATGCAGAAAATTAAAT
CACGTATGCAGACCATACAGAGTAGACAGAAGAGTTATGCTGACGTGAGACGAAAGGATCTTGAGTTTGATGTGGGGGACAAAGTGTTCTTGAAAGTGGCACCTATGAAA
GGTGTCTTACGATTTGAAATGAGAGGAAAGTTGAGTCCCCGTTTTGTTGGGTTGTTTGAGATTCTAGAGCGAATTAGCCCTGTGGCATATCGCTTGGCGTTGCCACCATC
ACTCTCGGCAGTTCATGACGTGTTCCATGTTTCTATGTTGAGGAACAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATTTCATTACAGGACTGCCTAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTTGTTGACAGGCTTACCAAATCACCGCATTTCATTCTGGGAAAATCCACTTA
TACTGCTAGTAAGTGGACACAGTTGTACATGTCTGAGATAGTGAGATTGCATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTTACCTCCAAGTTCTGGA
AAGGTTTACAGGCTGCTATGGGCACGAGGTTAGACTTTAGTACAGGTTTCCACCCACAGGCTGATGGTCAGACTGAGCGCCTGAACAAAGTTTTAGAGGATATGTTGCGA
GCTTGTGCATTAGAATTCCCAGGTAGTTGGGATTCTCACTTGCATTTGATGGAATTTGCTTATAATAATAGTTTTCAGGCTACCATTGGCATGGCACTGTTTGAGGCCTT
GTACGACAAATGTTGTAGATCCTCTATTTGCTGGGATGAGGTTGGTGAGCAGAGATTGATGGGTCCTGAGTTAGTTCAGTCTACTAACGAAGCGATGCAGAAAATTAAAT
CACGTATGCAGACCATACAGAGTAGACAGAAGAGTTATGCTGACGTGAGACGAAAGGATCTTGAGTTTGATGTGGGGGACAAAGTGTTCTTGAAAGTGGCACCTATGAAA
GGTGTCTTACGATTTGAAATGAGAGGAAAGTTGAGTCCCCGTTTTGTTGGGTTGTTTGAGATTCTAGAGCGAATTAGCCCTGTGGCATATCGCTTGGCGTTGCCACCATC
ACTCTCGGCAGTTCATGACGTGTTCCATGTTTCTATGTTGAGGAACAACTAG
Protein sequenceShow/hide protein sequence
MDFITGLPRTLRGFTVIWVVVDRLTKSPHFILGKSTYTASKWTQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQAAMGTRLDFSTGFHPQADGQTERLNKVLEDMLR
ACALEFPGSWDSHLHLMEFAYNNSFQATIGMALFEALYDKCCRSSICWDEVGEQRLMGPELVQSTNEAMQKIKSRMQTIQSRQKSYADVRRKDLEFDVGDKVFLKVAPMK
GVLRFEMRGKLSPRFVGLFEILERISPVAYRLALPPSLSAVHDVFHVSMLRNN